Rh5DG251600

Methionine gamma-lyase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
29057179 .. 29061921
4743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG251600.1

Sequence Viewer

Length: 1365 bp
ATGTGGGCCTTATCCTGCGCCACCTCTGCATATCCTGCGCTCACTTTCAGAGCTTCTGTACCCATGGCCACTACTCGTTCCGGCTCTCCCTTCTCCGTCTCAGTCCCTACCAATCACCATTATTATCAGAAAGACAGCCCTTTTGTTCCAGAGGTTGTGGAAGCAGTGGATTCCTTGCATTCAGAGTTCAGAGCAGTGGATAATTTGGTAGCATGCAACACCACCCGGGTTCTTAAAGCTTTCCAGAATGCCCGAATTGGATCTCATCACTTTACTGGGAGTACTGGCTATGGTCATGATGAAGCTGGGGGACGTGAAGCTCTTGACCAAGCTTTTGCAGAAATTGTAGGCGCTGAATCTGCAGTAGTTCGCTCACAGTTTTTCTCAGGAACTCATGCTATAACCTGCGCTCTGTTTGCTTTTCTCAGGCCAGGAGATGAGCTTTTGGCAGTTGCTGGTCCTCCCTATGACACCTTGGAGGAGGTTATTGGAAAGAGAGACTCTCATGGCATGGGATCCTTGATAGACTTTGGAGTGAAATACCGGGAAGTTCCACTTGCTGAAGATGGTGGCCTTGACTGGGATGCGCTTAGGCATGCTTTGAACCCTGAAACAAAATGTGCACTCATACAGCGTTCATGTGGTTATTCATGGCGTCAGAGTTTAAGTGTGGATGATATAAGGCGAGCAATTGAGATAATTAAGATGCAGAATCCTAACTGCCTGGTCATGGTGGATAATTGTTATGGTGAATTTGTGGAAAGCATTGAACCTCCAATGGTGGGTGCAGATTTAATTGCTGGCAGTTTGATAAAAAATCCTGGTGGAACTATAGCCCCATGCGGTGGATATGTTGCAGGAAGAGAAAGATGGGTAAAAGCAGCAGCAGCTCGTCTGTCTGCACCTGGCCTTGGAGTTGATTCTGGCTCAACTCCTGGTCACATTATGAGAGCATTTTTCCAAGGTTTGTTCCTTTCACCTCAAATGGTTGGCGAGGCTATCAAGGGGACTTTCCTAGTAGCAGAAGTTATGGCTTCCAAAGGCTATAAGGTCCAGCCCCTTCCTCGTGTTCCTCGCCATGACACAGTACAGGCCATACAGCTTGGAAATCGTGAGCGTCTTCTTGCTTTCTGTGAGGCTGTGCAGAGGAGCTCCCCAGTCGGTTCATTTACTAAACCAATTGCTGGCACAACTCCTGGATATGCATCAGAGGTGATCTTTGCTGATGGAACATTTGTTGATGGGAGTACAAGTGAGCTTTCATGCGATGGACCATTAAGAGAGCCATTCGCTGTATTTTGCCAGGGTGGCTCCCATTGGACTCAGTGGGGACTAGTTCTTGGAGAGGTTTTAAAAGCCATATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

48.74

Weight (kDa)

5.76

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Met_gamma_lyase PF06838 54 - 452 5.3e-164 Methionine gamma-lyase
Cys_Met_Meta_PP PF01053 71 - 297 4.1e-09 Cys/Met metabolism PLP-dependent enzyme
Aminotran_1_2 PF00155 102 - 309 7.2e-06 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015573)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 413
AccB7I CCANNNNNTGG 2 cut(s) 845, 1184
AciI CCGC 1 cut(s) 843
AclWI GGATC 3 cut(s) 268, 510, 523
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 655
AfaI GTAC 4 cut(s) 60, 283, 1089, 1249
AfiI CCNNNNNNNGG 6 cut(s) 580, 730, 782, 845, 911, 1184
AgsI TTSAA 2 cut(s) 604, 770
AhlI ACTAGT 1 cut(s) 1333
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 7 cut(s) 430, 723, 820, 904, 934, 1195, 1302
Alw21I GWGCWC 2 cut(s) 625, 1154
Alw26I GTCTC 2 cut(s) 103, 492
Alw44I GTGCAC 1 cut(s) 621
AlwI GGATC 3 cut(s) 268, 510, 523
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 6 cut(s) 6, 66, 428, 571, 907, 1092
ApaLI GTGCAC 1 cut(s) 621
ApeKI GCWGC 3 cut(s) 881, 884, 887
ApoI RAATTY 1 cut(s) 752
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 317, 349
AspLEI GCGC 5 cut(s) 20, 40, 353, 410, 589
AspS9I GGNCC 4 cut(s) 6, 458, 1051, 1271
AsuC2I CCSGG 3 cut(s) 226, 227, 545
AsuHPI GGTGA 4 cut(s) 107, 761, 969, 1225
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 3 cut(s) 458, 1051, 1271
BaeGI GKGCMC 1 cut(s) 625
BalI TGGCCA 1 cut(s) 68
BamHI GGATCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 1154
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 1 cut(s) 1112
Bbv12I GWGCWC 2 cut(s) 625, 1154
BbvI GCAGC 3 cut(s) 893, 896, 899
BccI CCATC 5 cut(s) 560, 864, 1220, 1235, 1262
BciT130I CCWGG 7 cut(s) 432, 725, 822, 906, 936, 1197, 1304
BcnI CCSGG 3 cut(s) 226, 227, 545
BcoDI GTCTC 2 cut(s) 103, 492
BcuI ACTAGT 1 cut(s) 1333
BfaI CTAG 2 cut(s) 1016, 1334
BfmI CTRYAG 2 cut(s) 360, 831
BfoI RGCGCY 1 cut(s) 354
BfuAI ACCTGC 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 1308
BisI GCNGC 3 cut(s) 882, 885, 888
BlsI GCNGC 3 cut(s) 883, 886, 889
BmcAI AGTACT 1 cut(s) 283
Bme18I GGWCC 3 cut(s) 458, 1051, 1271
BmeT110I CYCGRG 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 4 cut(s) 6, 458, 1051, 1271
BmiI GGNNCC 2 cut(s) 517, 1312
BmrI ACTGGG 3 cut(s) 285, 589, 1151
BmsI GCATC 3 cut(s) 574, 696, 1214
BmuI ACTGGG 3 cut(s) 285, 589, 1151
BpiI GAAGAC 1 cut(s) 1112
BplI GAGNNNNNCTC 2 cut(s) 487, 519
Bpu10I CCTNAGC 1 cut(s) 590
BpuMI CCSGG 3 cut(s) 226, 227, 545
BsaBI GATNNNNATC 1 cut(s) 1204
BsaHI GRCGYC 1 cut(s) 655
BsaJI CCNNGG 6 cut(s) 63, 225, 474, 910, 961, 1303
BsaXI ACNNNNNCTCC 2 cut(s) 1237, 1267
Bsc4I CCNNNNNNNGG 6 cut(s) 580, 730, 782, 845, 911, 1184
Bse1I ACTGG 4 cut(s) 280, 289, 584, 1157
Bse8I GATNNNNATC 1 cut(s) 1204
BseBI CCWGG 7 cut(s) 432, 725, 822, 906, 936, 1197, 1304
BseDI CCNNGG 6 cut(s) 63, 225, 474, 910, 961, 1303
BseGI GGATG 2 cut(s) 589, 679
BseJI GATNNNNATC 1 cut(s) 1204
BseLI CCNNNNNNNGG 6 cut(s) 580, 730, 782, 845, 911, 1184
BseMII CTCAG 4 cut(s) 114, 399, 439, 1337
BseNI ACTGG 4 cut(s) 280, 289, 584, 1157
BseRI GAGGAG 2 cut(s) 494, 1162
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 3 cut(s) 893, 896, 899
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 3 cut(s) 807, 885, 1163
BshFI GGCC 6 cut(s) 8, 68, 430, 573, 909, 1094
BsiHKAI GWGCWC 2 cut(s) 625, 1154
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 3 cut(s) 81, 226, 544
BslFI GGGAC 4 cut(s) 89, 324, 1021, 1344
BslI CCNNNNNNNGG 6 cut(s) 580, 730, 782, 845, 911, 1184
BsmAI GTCTC 2 cut(s) 103, 492
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 4 cut(s) 89, 324, 1021, 1344
BsmI GAATGC 2 cut(s) 178, 253
BsnI GGCC 6 cut(s) 8, 68, 430, 573, 909, 1094
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 625, 1154
Bsp143I GATC 3 cut(s) 260, 515, 1215
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 843
BspANI GGCC 6 cut(s) 8, 68, 430, 573, 909, 1094
BspCNI CTCAG 4 cut(s) 113, 398, 438, 1336
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 517, 1312
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 3 cut(s) 268, 510, 523
BsrI ACTGG 4 cut(s) 280, 289, 584, 1157
BssECI CCNNGG 6 cut(s) 63, 225, 474, 910, 961, 1303
BssMI GATC 3 cut(s) 260, 515, 1215
BssNI GRCGYC 1 cut(s) 655
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 4 cut(s) 63, 474, 910, 961
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 7 cut(s) 432, 725, 822, 906, 936, 1197, 1304
Bst4CI ACNGT 2 cut(s) 378, 1087
Bst6I CTCTTC 1 cut(s) 856
BstACI GRCGYC 1 cut(s) 655
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 5 cut(s) 214, 597, 687, 802, 1186
BstDEI CTNAG 5 cut(s) 100, 385, 425, 590, 1323
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 589, 679
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 5 cut(s) 20, 40, 353, 410, 589
BstKTI GATC 3 cut(s) 263, 518, 1218
BstMAI GTCTC 2 cut(s) 103, 492
BstMBI GATC 3 cut(s) 260, 515, 1215
BstMWI GCNNNNNNNGC 6 cut(s) 26, 35, 359, 416, 887, 1308
BstNI CCWGG 7 cut(s) 432, 725, 822, 906, 936, 1197, 1304
BstNSI RCATGY 2 cut(s) 216, 599
BstSFI CTRYAG 2 cut(s) 360, 831
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 893, 896, 899
BstV2I GAAGAC 1 cut(s) 1112
BstX2I RGATCY 2 cut(s) 260, 515
BstYI RGATCY 2 cut(s) 260, 515
BsuRI GGCC 6 cut(s) 8, 68, 430, 573, 909, 1094
BtgI CCRYGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 1281
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 589, 679
BtsI GCAGTG 2 cut(s) 171, 201
BtsIMutI CAGTG 3 cut(s) 171, 201, 1331
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 5 cut(s) 214, 597, 687, 802, 1186
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 295
CfoI GCGC 5 cut(s) 20, 40, 353, 410, 589
Cfr13I GGNCC 4 cut(s) 6, 458, 1051, 1271
Cfr9I CCCGGG 1 cut(s) 225
CseI GACGC 2 cut(s) 644, 1106
Csp6I GTAC 4 cut(s) 59, 282, 1088, 1248
CviQI GTAC 4 cut(s) 59, 282, 1088, 1248
DdeI CTNAG 5 cut(s) 100, 385, 425, 590, 1323
DpnI GATC 3 cut(s) 262, 517, 1217
DpnII GATC 3 cut(s) 260, 515, 1215
DraI TTTAAA 1 cut(s) 1353
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 856
EarI CTCTTC 1 cut(s) 856
Ecl136II GAGCTC 1 cut(s) 1152
Eco130I CCWWGG 4 cut(s) 63, 474, 910, 961
Eco24I GRGCYC 1 cut(s) 1154
Eco47I GGWCC 3 cut(s) 458, 1051, 1271
Eco53kI GAGCTC 1 cut(s) 1152
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 1152
EcoRII CCWGG 7 cut(s) 430, 723, 820, 904, 934, 1195, 1302
EcoT14I CCWWGG 4 cut(s) 63, 474, 910, 961
EcoT22I ATGCAT 1 cut(s) 1207
EcoT38I GRGCYC 1 cut(s) 1154
ErhI CCWWGG 4 cut(s) 63, 474, 910, 961
Esp3I CGTCTC 1 cut(s) 103
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 4 cut(s) 89, 324, 1021, 1344
Fnu4HI GCNGC 3 cut(s) 882, 885, 888
FokI GGATG 2 cut(s) 596, 686
FriOI GRGCYC 1 cut(s) 1154
Fsp4HI GCNGC 3 cut(s) 882, 885, 888
FspBI CTAG 2 cut(s) 1016, 1334
GlaI GCGC 5 cut(s) 19, 39, 352, 409, 588
GluI GCNGC 3 cut(s) 882, 885, 888
GsaI CCCAGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 6 cut(s) 8, 68, 430, 573, 909, 1094
HapII CCGG 3 cut(s) 81, 226, 544
HgaI GACGC 2 cut(s) 644, 1106
HhaI GCGC 5 cut(s) 20, 40, 353, 410, 589
Hin1I GRCGYC 1 cut(s) 655
Hin6I GCGC 5 cut(s) 18, 38, 351, 408, 587
HinP1I GCGC 5 cut(s) 18, 38, 351, 408, 587
HindIII AAGCTT 2 cut(s) 237, 330
HinfI GANTC 6 cut(s) 170, 356, 500, 712, 920, 1321
HpaII CCGG 3 cut(s) 81, 226, 544
HphI GGTGA 4 cut(s) 107, 761, 969, 1225
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 6 cut(s) 50, 129, 184, 191, 660, 1210
Hpy188III TCNNGA 6 cut(s) 149, 244, 296, 323, 387, 1112
Hpy8I GTNNAC 1 cut(s) 623
HpyAV CCTTC 2 cut(s) 100, 1070
HpyCH4III ACNGT 2 cut(s) 378, 1087
HpyCH4IV ACGT 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 35, 359, 416, 887, 1308
HpyF3I CTNAG 5 cut(s) 100, 385, 425, 590, 1323
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 1 cut(s) 655
HspAI GCGC 5 cut(s) 18, 38, 351, 408, 587
Kzo9I GATC 3 cut(s) 260, 515, 1215
LmnI GCTCC 3 cut(s) 1149, 1157, 1316
Lsp1109I GCAGC 3 cut(s) 893, 896, 899
LweI GCATC 3 cut(s) 574, 696, 1214
MaeI CTAG 2 cut(s) 1016, 1334
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 938
MalI GATC 3 cut(s) 262, 517, 1217
MboI GATC 3 cut(s) 260, 515, 1215
MboII GAAGA 3 cut(s) 575, 873, 1112
MfeI CAATTG 2 cut(s) 690, 1179
MflI RGATCY 2 cut(s) 260, 515
MhlI GDGCHC 2 cut(s) 625, 1154
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 9 cut(s) 202, 255, 342, 690, 699, 739, 752, 795, 1179
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 2 cut(s) 494, 1315
Mox20I TGGCCA 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 1207
MscI TGGCCA 1 cut(s) 68
MseI TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1352
Msp20I TGGCCA 1 cut(s) 68
MspI CCGG 3 cut(s) 81, 226, 544
MunI CAATTG 2 cut(s) 690, 1179
Mva1269I GAATGC 2 cut(s) 178, 253
MvaI CCWGG 7 cut(s) 432, 725, 822, 906, 936, 1197, 1304
MwoI GCNNNNNNNGC 6 cut(s) 26, 35, 359, 416, 887, 1308
NciI CCSGG 3 cut(s) 226, 227, 545
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 260, 515, 1215
NlaIV GGNNCC 2 cut(s) 517, 1312
NmuCI GTSAC 1 cut(s) 938
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 2 cut(s) 216, 599
PaeI GCATGC 2 cut(s) 216, 599
PagI TCATGA 1 cut(s) 295
PctI GAATGC 2 cut(s) 178, 253
PfeI GAWTC 4 cut(s) 170, 356, 712, 920
PflMI CCANNNNNTGG 2 cut(s) 845, 1184
PfoI TCCNGGA 1 cut(s) 1195
PkrI GCNGC 3 cut(s) 883, 886, 889
PleI GAGTC 2 cut(s) 494, 1315
PpsI GAGTC 2 cut(s) 494, 1315
Psp124BI GAGCTC 1 cut(s) 1154
Psp6I CCWGG 7 cut(s) 430, 723, 820, 904, 934, 1195, 1302
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 7 cut(s) 430, 723, 820, 904, 934, 1195, 1302
PspN4I GGNNCC 2 cut(s) 517, 1312
PspPI GGNCC 4 cut(s) 6, 458, 1051, 1271
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 2 cut(s) 260, 515
RsaI GTAC 4 cut(s) 60, 283, 1089, 1249
RsaNI GTAC 4 cut(s) 59, 282, 1088, 1248
SacI GAGCTC 1 cut(s) 1154
SaqAI TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1352
SatI GCNGC 3 cut(s) 882, 885, 888
Sau3AI GATC 3 cut(s) 260, 515, 1215
Sau96I GGNCC 4 cut(s) 6, 458, 1051, 1271
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 2 cut(s) 494, 1315
SduI GDGCHC 2 cut(s) 625, 1154
SfaNI GCATC 3 cut(s) 574, 696, 1214
SfcI CTRYAG 2 cut(s) 360, 831
SinI GGWCC 3 cut(s) 458, 1051, 1271
SmaI CCCGGG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 1333
SphI GCATGC 2 cut(s) 216, 599
Sse9I AATT 9 cut(s) 202, 255, 342, 690, 699, 739, 752, 795, 1179
SsiI CCGC 1 cut(s) 843
SspMI CTAG 2 cut(s) 1016, 1334
SstI GAGCTC 1 cut(s) 1154
StyI CCWWGG 4 cut(s) 63, 474, 910, 961
TaaI ACNGT 2 cut(s) 378, 1087
TaiI ACGT 1 cut(s) 316
TasI AATT 9 cut(s) 202, 255, 342, 690, 699, 739, 752, 795, 1179
TatI WGTACW 3 cut(s) 281, 1087, 1247
TfiI GAWTC 4 cut(s) 170, 356, 712, 920
Tru1I TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1352
Tru9I TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1352
TscAI CASTG 3 cut(s) 171, 201, 1331
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 3 cut(s) 881, 884, 887
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 5 cut(s) 315, 627, 639, 1155, 1251
TspGWI ACGGA 1 cut(s) 85
TspMI CCCGGG 1 cut(s) 225
TspRI CASTG 3 cut(s) 171, 201, 1331
Van91I CCANNNNNTGG 2 cut(s) 845, 1184
VneI GTGCAC 1 cut(s) 621
VpaK11BI GGWCC 3 cut(s) 458, 1051, 1271
XapI RAATTY 1 cut(s) 752
XceI RCATGY 2 cut(s) 216, 599
XmaI CCCGGG 1 cut(s) 225
XspI CTAG 2 cut(s) 1016, 1334
ZrmI AGTACT 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.