MD03G1220100.v1.1

Methionine gamma-lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
30437181 .. 30442321
5141 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1220100.v1.1.491

Sequence Viewer

Length: 1359 bp
ATGTGGGCCTTATCCTGCGGCACGTCTGCTTATCCTACGCTCGCTCCCAGAGCTTCTGTACCCAGGGCTACTACTCGCTCAAGCTCTCCACTCTCAGTCCCTACCAATCACCATTTTCATCCGAAAGACTCTCCTTTTGTTCCAGAGGTTTCGGACGCAGTGGACTCGTTGTATTCAGAGTTCAGAGCCGTGGATAATTTGGTTGCACGCAATACCACCCGTGTTCTTAAAGCTTTCCAGAATGCTCGAGTTGGATCACATCACTTTGCTGGATGCACTGGTTATGGTCATGATGAAGCTGGGGGACGTGAAGCGCTGGACCAAGCTTTTGCTGAAATTGTTGGGGCTGAATCTGCTATAGTTCGCTCACAGTTTTTTTCAGGAACTCATGCTATAACATGTGCTTTATTTGCTTTTCTAAGGCCAGGGGATGAGCTTTTGGCAGTTGCTGGTCCTCCCTATGACACCTTGGAGGAAGTTATTGGAAAGAGAGACTCTCATGGGATGGGGTCCCTGACAGATTTTGGAGTGAAATACCGAGAAGTTCCACTTGCTGAAGATGGCGGCCTTAACTGGGATGTACTTATCCATGCTTTGAGACCTGAAACAAAATGTGCGCTCATACAGAGGTCATGTGGTTATTCATGGCGTCGGAGTTTAAGTGTAGATGAGATAGGGCGAGCAATTAAGATAATTAAGACGCAGAATCCTAACTGCTTGGTCATGGTGGATAACTGTTATGGTGAATTTGTGGAAAGCATTGAACCTCCAATGGTGGGTGCAGATTTGATTGCGGGCAGTTTGATAAAAAATCCTGGTGGGACTATAGCACCATGTGGTGGATATGTTGCAGGGAGAGAAAAATGGGTAAAAGCAGCATCAGCTCGTCTGTCTGCACCTGGCCTTGGAGTTGATTGTGGCGCAACTCCTGGTGACATTATGCGATCATTTTTCCAGGGTTTGTTCCTTTCACCTCAAATGGTAGGCGAGGCTATCAAGGGCACTTTAGTGGTAGCTGAAGTTATGGCAGCCAGAGGGTATAAGGTGCAGCCACTTCCTCGTATTCCTCGTCATGACACAGTCCAGGCCGTACAGCTTGGAAGCCGTGAGCGCCTTCTTGCTTTCTGCGAGGCTGTACAGAGAAACTCCCCAGTGGGTTCATTTACCAAACCAGTGGCTGGTGCAACTCCTGGATATGCATCAGAGGTGATCTTTGCTGATGGAACCTTCATCGATGGGAGTACAAGTGAGCTTTCATGCGATGGACCACTGAGAGAGCCATTTGCTGTGTTTTGCCAGGGTGGCTCCCATTGGACTCAGTGGGGACTAGTTCTTGGAGAGGTTTTAAAAGCCATATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

453

Amino Acids

48.31

Weight (kDa)

6.14

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Met_gamma_lyase PF06838 52 - 450 2.7e-164 Methionine gamma-lyase
Cys_Met_Meta_PP PF01053 70 - 294 1e-06 Cys/Met metabolism PLP-dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015573)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 839, 1178
AciI CCGC 3 cut(s) 18, 564, 794
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 2 cut(s) 576, 1038
AcyI GRCGYC 1 cut(s) 649
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 5 cut(s) 60, 582, 1092, 1137, 1243
AfeI AGCGCT 1 cut(s) 315
AfiI CCNNNNNNNGG 5 cut(s) 574, 776, 839, 905, 1178
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 1 cut(s) 764
AhlI ACTAGT 1 cut(s) 1327
AjiI CACGTC 2 cut(s) 24, 308
AjnI CCWGG 9 cut(s) 62, 424, 814, 898, 928, 954, 1083, 1189, 1296
AleI CACNNNNGTG 1 cut(s) 1007
Alw26I GTCTC 2 cut(s) 486, 592
AlwI GGATC 1 cut(s) 262
AlwNI CAGNNNCTG 2 cut(s) 449, 1178
Ama87I CYCGRG 1 cut(s) 246
Aor51HI AGCGCT 1 cut(s) 315
AoxI GGCC 5 cut(s) 6, 422, 565, 901, 1086
ApeKI GCWGC 3 cut(s) 875, 1028, 1048
ApoI RAATTY 1 cut(s) 746
ArsI GACNNNNNNTTYG 4 cut(s) 119, 151, 311, 343
AspLEI GCGC 4 cut(s) 316, 619, 923, 1113
AspS9I GGNCC 5 cut(s) 6, 319, 452, 510, 1265
AsuHPI GGTGA 5 cut(s) 101, 755, 944, 963, 1219
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 4 cut(s) 319, 452, 510, 1265
BaeGI GKGCMC 1 cut(s) 1004
BbvI GCAGC 3 cut(s) 887, 1040, 1060
BccI CCATC 5 cut(s) 499, 554, 1214, 1229, 1256
BceAI ACGGC 3 cut(s) 173, 1073, 1089
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciT130I CCWGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
BcoDI GTCTC 2 cut(s) 486, 592
BcuI ACTAGT 1 cut(s) 1327
BfaI CTAG 1 cut(s) 1328
BfmI CTRYAG 2 cut(s) 357, 825
BfoI RGCGCY 2 cut(s) 317, 1114
BglI GCCNNNNNGGC 1 cut(s) 1302
BisI GCNGC 5 cut(s) 19, 565, 876, 1029, 1049
BlsI GCNGC 5 cut(s) 20, 566, 877, 1030, 1050
Bme1390I CCNGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
Bme18I GGWCC 4 cut(s) 319, 452, 510, 1265
BmeT110I CYCGRG 1 cut(s) 246
BmgBI CACGTC 2 cut(s) 24, 308
BmgT120I GGNCC 5 cut(s) 6, 319, 452, 510, 1265
BmiI GGNNCC 4 cut(s) 511, 512, 1225, 1306
BmrFI CCNGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
BmrI ACTGGG 2 cut(s) 583, 1145
BmsI GCATC 3 cut(s) 263, 887, 1208
BmuI ACTGGG 2 cut(s) 583, 1145
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpuEI CTTGAG 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 1233
BsaBI GATNNNNATC 1 cut(s) 1198
BsaHI GRCGYC 1 cut(s) 649
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 8 cut(s) 62, 63, 189, 425, 468, 904, 955, 1297
BsaXI ACNNNNNCTCC 6 cut(s) 28, 58, 646, 676, 1231, 1261
Bsc4I CCNNNNNNNGG 5 cut(s) 574, 776, 839, 905, 1178
Bse1I ACTGG 4 cut(s) 283, 578, 1151, 1172
Bse8I GATNNNNATC 1 cut(s) 1198
BseBI CCWGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
BseCI ATCGAT 1 cut(s) 1233
BseDI CCNNGG 8 cut(s) 62, 63, 189, 425, 468, 904, 955, 1297
BseGI GGATG 5 cut(s) 118, 278, 436, 510, 583
BseJI GATNNNNATC 1 cut(s) 1198
BseLI CCNNNNNNNGG 5 cut(s) 574, 776, 839, 905, 1178
BseMII CTCAG 3 cut(s) 108, 1262, 1331
BseNI ACTGG 4 cut(s) 283, 578, 1151, 1172
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 3 cut(s) 887, 1040, 1060
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 3 cut(s) 801, 879, 1067
BshFI GGCC 5 cut(s) 8, 424, 567, 903, 1088
BshVI ATCGAT 1 cut(s) 1233
BsiHKCI CYCGRG 1 cut(s) 246
BslFI GGGAC 5 cut(s) 83, 318, 496, 835, 1338
BslI CCNNNNNNNGG 5 cut(s) 574, 776, 839, 905, 1178
BsmAI GTCTC 2 cut(s) 486, 592
BsmFI GGGAC 5 cut(s) 83, 318, 496, 835, 1338
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 5 cut(s) 8, 424, 567, 903, 1088
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 1004
Bsp1407I TGTACA 1 cut(s) 1135
Bsp143I GATC 3 cut(s) 254, 944, 1209
BspACI CCGC 3 cut(s) 18, 564, 794
BspANI GGCC 5 cut(s) 8, 424, 567, 903, 1088
BspCNI CTCAG 3 cut(s) 107, 1263, 1330
BspDI ATCGAT 1 cut(s) 1233
BspHI TCATGA 2 cut(s) 289, 1072
BspLI GGNNCC 4 cut(s) 511, 512, 1225, 1306
BspPI GGATC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 592
BsrGI TGTACA 1 cut(s) 1135
BsrI ACTGG 4 cut(s) 283, 578, 1151, 1172
BssECI CCNNGG 8 cut(s) 62, 63, 189, 425, 468, 904, 955, 1297
BssMI GATC 3 cut(s) 254, 944, 1209
BssNI GRCGYC 1 cut(s) 649
BssT1I CCWWGG 2 cut(s) 468, 904
Bst2UI CCWGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
Bst4CI ACNGT 3 cut(s) 372, 737, 1081
BstACI GRCGYC 1 cut(s) 649
BstAUI TGTACA 1 cut(s) 1135
BstC8I GCNNGC 4 cut(s) 42, 208, 681, 796
BstDEI CTNAG 4 cut(s) 94, 419, 1271, 1317
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 5 cut(s) 118, 278, 436, 510, 583
BstH2I RGCGCY 2 cut(s) 317, 1114
BstHHI GCGC 4 cut(s) 316, 619, 923, 1113
BstKTI GATC 3 cut(s) 257, 947, 1212
BstMAI GTCTC 2 cut(s) 486, 592
BstMBI GATC 3 cut(s) 254, 944, 1209
BstMWI GCNNNNNNNGC 6 cut(s) 50, 353, 410, 881, 1110, 1302
BstNI CCWGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 9 cut(s) 62, 424, 814, 898, 928, 954, 1083, 1189, 1296
BstSFI CTRYAG 2 cut(s) 357, 825
BstSLI GKGCMC 1 cut(s) 1004
BstV1I GCAGC 3 cut(s) 887, 1040, 1060
BstXI CCANNNNNNTGG 1 cut(s) 1174
Bsu15I ATCGAT 1 cut(s) 1233
BsuRI GGCC 5 cut(s) 8, 424, 567, 903, 1088
BsuTUI ATCGAT 1 cut(s) 1233
BtgI CCRYGG 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 1275
BtrI CACGTC 2 cut(s) 24, 308
BtsCI GGATG 5 cut(s) 118, 278, 436, 510, 583
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 6 cut(s) 165, 276, 1158, 1179, 1268, 1325
Cac8I GCNNGC 4 cut(s) 42, 208, 681, 796
CaiI CAGNNNCTG 2 cut(s) 449, 1178
CciI TCATGA 2 cut(s) 289, 1072
CfoI GCGC 4 cut(s) 316, 619, 923, 1113
Cfr13I GGNCC 5 cut(s) 6, 319, 452, 510, 1265
ClaI ATCGAT 1 cut(s) 1233
CseI GACGC 3 cut(s) 164, 638, 709
Csp6I GTAC 5 cut(s) 59, 581, 1091, 1136, 1242
CviQI GTAC 5 cut(s) 59, 581, 1091, 1136, 1242
DdeI CTNAG 4 cut(s) 94, 419, 1271, 1317
DpnI GATC 3 cut(s) 256, 946, 1211
DpnII GATC 3 cut(s) 254, 944, 1209
DraI TTTAAA 1 cut(s) 1347
DraIII CACNNNGTG 1 cut(s) 836
Eco130I CCWWGG 2 cut(s) 468, 904
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 4 cut(s) 319, 452, 510, 1265
Eco47III AGCGCT 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 576, 1038
Eco88I CYCGRG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 510
EcoRII CCWGG 9 cut(s) 62, 424, 814, 898, 928, 954, 1083, 1189, 1296
EcoT14I CCWWGG 2 cut(s) 468, 904
EcoT22I ATGCAT 1 cut(s) 1201
ErhI CCWWGG 2 cut(s) 468, 904
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 5 cut(s) 83, 318, 496, 835, 1338
FauI CCCGC 1 cut(s) 787
Fnu4HI GCNGC 5 cut(s) 19, 565, 876, 1029, 1049
FokI GGATG 5 cut(s) 105, 285, 443, 517, 590
Fsp4HI GCNGC 5 cut(s) 19, 565, 876, 1029, 1049
FspBI CTAG 1 cut(s) 1328
GlaI GCGC 4 cut(s) 315, 618, 922, 1112
GluI GCNGC 5 cut(s) 19, 565, 876, 1029, 1049
GsaI CCCAGC 1 cut(s) 303
HaeII RGCGCY 2 cut(s) 317, 1114
HaeIII GGCC 5 cut(s) 8, 424, 567, 903, 1088
HgaI GACGC 3 cut(s) 164, 638, 709
HhaI GCGC 4 cut(s) 316, 619, 923, 1113
Hin1I GRCGYC 1 cut(s) 649
Hin6I GCGC 4 cut(s) 314, 617, 921, 1111
HinP1I GCGC 4 cut(s) 314, 617, 921, 1111
HindIII AAGCTT 2 cut(s) 231, 324
HinfI GANTC 6 cut(s) 128, 164, 350, 494, 706, 1315
HphI GGTGA 5 cut(s) 101, 755, 944, 963, 1219
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 6 cut(s) 123, 154, 178, 185, 654, 1204
Hpy188III TCNNGA 5 cut(s) 143, 238, 290, 381, 1073
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 2 cut(s) 1124, 1237
HpyCH4III ACNGT 3 cut(s) 372, 737, 1081
HpyCH4IV ACGT 2 cut(s) 23, 307
HpyCH4V TGCA 8 cut(s) 206, 276, 782, 851, 896, 1048, 1184, 1199
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 353, 410, 881, 1110, 1302
HpyF3I CTNAG 4 cut(s) 94, 419, 1271, 1317
HpySE526I ACGT 2 cut(s) 23, 307
Hsp92I GRCGYC 1 cut(s) 649
HspAI GCGC 4 cut(s) 314, 617, 921, 1111
KflI GGGWCCC 1 cut(s) 510
Kzo9I GATC 3 cut(s) 254, 944, 1209
LmnI GCTCC 2 cut(s) 49, 1310
Lsp1109I GCAGC 3 cut(s) 887, 1040, 1060
LweI GCATC 3 cut(s) 263, 887, 1208
MaeI CTAG 1 cut(s) 1328
MaeII ACGT 2 cut(s) 23, 307
MaeIII GTNAC 1 cut(s) 932
MalI GATC 3 cut(s) 256, 946, 1211
MboI GATC 3 cut(s) 254, 944, 1209
MboII GAAGA 1 cut(s) 569
MhlI GDGCHC 1 cut(s) 1004
MluCI AATT 5 cut(s) 196, 336, 684, 693, 746
MlyI GAGTC 4 cut(s) 122, 158, 488, 1309
MmeI TCCRAC 2 cut(s) 232, 632
Mph1103I ATGCAT 1 cut(s) 1201
MseI TTAA 6 cut(s) 228, 570, 659, 687, 696, 1346
MslI CAYNNNNRTG 1 cut(s) 1007
MspR9I CCNGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
MwoI GCNNNNNNNGC 6 cut(s) 50, 353, 410, 881, 1110, 1302
NdeII GATC 3 cut(s) 254, 944, 1209
NlaIV GGNNCC 4 cut(s) 511, 512, 1225, 1306
NmuCI GTSAC 1 cut(s) 932
NsiI ATGCAT 1 cut(s) 1201
NspI RCATGY 1 cut(s) 402
OliI CACNNNNGTG 1 cut(s) 1007
PaeR7I CTCGAG 1 cut(s) 246
PagI TCATGA 2 cut(s) 289, 1072
PasI CCCWGGG 1 cut(s) 63
PciI ACATGT 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 1066
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 350, 706
PflFI GACNNNGTC 1 cut(s) 1079
PflMI CCANNNNNTGG 2 cut(s) 839, 1178
PfoI TCCNGGA 1 cut(s) 1189
PkrI GCNGC 5 cut(s) 20, 566, 877, 1030, 1050
PleI GAGTC 4 cut(s) 122, 158, 488, 1309
PpsI GAGTC 4 cut(s) 122, 158, 488, 1309
PpuMI RGGWCCY 1 cut(s) 510
PscI ACATGT 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 510
Psp6I CCWGG 9 cut(s) 62, 424, 814, 898, 928, 954, 1083, 1189, 1296
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 9 cut(s) 62, 424, 814, 898, 928, 954, 1083, 1189, 1296
PspN4I GGNNCC 4 cut(s) 511, 512, 1225, 1306
PspPI GGNCC 5 cut(s) 6, 319, 452, 510, 1265
PspPPI RGGWCCY 1 cut(s) 510
PspXI VCTCGAGB 1 cut(s) 246
PsrI GAACNNNNNNTAC 2 cut(s) 164, 196
PstNI CAGNNNCTG 2 cut(s) 449, 1178
PsyI GACNNNGTC 1 cut(s) 1079
RsaI GTAC 5 cut(s) 60, 582, 1092, 1137, 1243
RsaNI GTAC 5 cut(s) 59, 581, 1091, 1136, 1242
RseI CAYNNNNRTG 1 cut(s) 1007
SaqAI TTAA 6 cut(s) 228, 570, 659, 687, 696, 1346
SatI GCNGC 5 cut(s) 19, 565, 876, 1029, 1049
Sau3AI GATC 3 cut(s) 254, 944, 1209
Sau96I GGNCC 5 cut(s) 6, 319, 452, 510, 1265
SchI GAGTC 4 cut(s) 122, 158, 488, 1309
ScrFI CCNGG 9 cut(s) 64, 426, 816, 900, 930, 956, 1085, 1191, 1298
SduI GDGCHC 1 cut(s) 1004
SfaNI GCATC 3 cut(s) 263, 887, 1208
SfcI CTRYAG 2 cut(s) 357, 825
Sfr274I CTCGAG 1 cut(s) 246
SinI GGWCC 4 cut(s) 319, 452, 510, 1265
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 1007
SmlI CTYRAG 2 cut(s) 79, 246
SmoI CTYRAG 2 cut(s) 79, 246
SpeI ACTAGT 1 cut(s) 1327
Sse9I AATT 5 cut(s) 196, 336, 684, 693, 746
SsiI CCGC 3 cut(s) 18, 564, 794
SspMI CTAG 1 cut(s) 1328
StyD4I CCNGG 9 cut(s) 62, 424, 814, 898, 928, 954, 1083, 1189, 1296
StyI CCWWGG 2 cut(s) 468, 904
TaaI ACNGT 3 cut(s) 372, 737, 1081
TaiI ACGT 2 cut(s) 26, 310
TaqI TCGA 2 cut(s) 247, 1233
TasI AATT 5 cut(s) 196, 336, 684, 693, 746
TatI WGTACW 3 cut(s) 580, 1135, 1241
TauI GCSGC 2 cut(s) 21, 567
TfiI GAWTC 2 cut(s) 350, 706
Tru1I TTAA 6 cut(s) 228, 570, 659, 687, 696, 1346
Tru9I TTAA 6 cut(s) 228, 570, 659, 687, 696, 1346
TscAI CASTG 6 cut(s) 165, 283, 1158, 1179, 1275, 1325
TseFI GTSAC 1 cut(s) 932
TseI GCWGC 3 cut(s) 875, 1028, 1048
Tsp45I GTSAC 1 cut(s) 932
TspDTI ATGAA 6 cut(s) 107, 309, 633, 1149, 1219, 1245
TspRI CASTG 6 cut(s) 165, 283, 1158, 1179, 1275, 1325
Tth111I GACNNNGTC 1 cut(s) 1079
Van91I CCANNNNNTGG 2 cut(s) 839, 1178
VpaK11BI GGWCC 4 cut(s) 319, 452, 510, 1265
XapI RAATTY 1 cut(s) 746
XceI RCATGY 1 cut(s) 402
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 1 cut(s) 1328
Zsp2I ATGCAT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.