RLG00000033603

Methionine gamma-lyase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
29548976 .. 29554444
5469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033603

Sequence Viewer

Length: 1683 bp
ATGTGGGCCTTATCCTGCGCCACCTCTGCTTATCCTGCGCTCACTTTCAGAGCTTCTGTACCCAAGGCCACTACTCGTTCCGGCTCTCCCGTCTCGGTCTCAGTCCCTACCAATCACCATTATTATCAGAAAGACAGTCCTTTTGTTCCAGAGGTTGTGGAAGCAGTGGATTCCTTGCATTCAGAGTTCAGAGCTGTGGATAATTTGGTAGCACACAATACCACCCGGGTTCTTAAAGCTTTCCAGAATGCCCGAATTGGATCTCATCACTTTGCTGGAAGTACTGGCTATGGTCACGATGAAGCTGGGGGACGTGAAGCTCTTGACCAAGCTTTTGCAGAAATTGTAGGCGCTGAATCTGCAATAGTTCGCTCACAGTTTTTCTCAGGAACTCATGCTATAACCTGTGCTCTGTTTTCTTTTCTAAGGCCAGGAGATGAGCTTTTGGCAGTTGCTGGTCCACCCTATGACACCTTGGAGGAGGTTATCGGAAAGAGAGACTCTCATGGCATGGGATCCTTGATAGATTTTGGAGTGAAATACCGTGAAGTTCCACTTGCTGAAGATGGTAGCCTTGATTGGGATGCGCTTAGGCATGCTTTGAACCCTGAAACAAAATGTGCACTCATACAGCGGTCATGTGGTTATTCATGGCGTCAGAGTTTAAGTGTGGATGATATAAGGCGAGCAATTGAGATAATTAAGATGCAGAATCCTAACTGCCTGGTCATGGTGGATAATTGTTATGGTGAATTTGTGGAAAGCATTGAACCTCCAATGGTGGGTGCAGATTTAATTGCTGGCAGTTTGATAAAAAACCCTGGTGGAACTATTGCCCCGTGTGGTGGATATGTTGCAGGAAGAGAAAGATGGGTAAAAGCAGCAGCAGCTCGCCTGTCTGCACCTGGCCTTGGAGTTGATTGTGGCTCAACTCCTGGTCACATTATGAGAGCGTTTTTCCAAGGTTTGTTCCTTTCACCTCAAATGGTTGGCGAGGCTATCAAGGGGACTTTCCTAGTAGCTGAAGTTATGGCTTCCAAAGGGTATAAGGTCCAGCCCCTTCCTGGTGTTCCTCGCCATGACACAGTACAGGCCGTACAGCTTGGAAATCGTGAGCATCTTCTTGCTTTCTGTGAGGCTGTGCAGAGGAGCTCCCCAGTCGGTTCATTTACTAAGCCAATTGCTGGCACAACTCCTGGATATGCATCAGAGGTGATCTTTGCTGATGGAACATTTGTTGATGGGAGTACAAGTGAGCTTTCATGCGATGGACCATTAAGAGAGCCATTCGCTGTATTTTGCCAGGGGGGCTCCCATTGGACTCAGTGGGGACTAGTTCTTGGAGAGTCTCAAGATATGTCCTTGCTGCAATTGCTCAAAATACAGCAGCAGTGGCATTTCACATCATTTTTTTCGAAAGAAGGGAGCTACTATGTGAATCCCAGGAGACAAATGAGGATGCTGCTTCAAGGGGCAGACCGCAAACAATTTGTCAAGGTTGTCATGATTGATATTCAAAGTAGAACACTGATCTTGTCTCCACTTCCTTCCTTCCTTGGTCGCTCTCGATTAAACTCAAGCATATCTCCATCAGAAAACCAGGCGTCGATCTCTTCCTCTGCAACCAAAACCACTGACCCAGTTCTTGAGCCACCTCTGGGTGGTGGAAAGATTCAAACTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

60.56

Weight (kDa)

6.32

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Met_gamma_lyase PF06838 54 - 446 9.6e-164 Methionine gamma-lyase
Cys_Met_Meta_PP PF01053 61 - 297 4.3e-09 Cys/Met metabolism PLP-dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015573)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1184
AciI CCGC 2 cut(s) 634, 1480
AclWI GGATC 3 cut(s) 268, 510, 523
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 2 cut(s) 582, 1044
AcyI GRCGYC 2 cut(s) 655, 1604
AfaI GTAC 5 cut(s) 60, 283, 1089, 1098, 1249
AfiI CCNNNNNNNGG 9 cut(s) 580, 730, 782, 845, 911, 1064, 1184, 1658, 1661
AgsI TTSAA 5 cut(s) 604, 770, 1469, 1517, 1676
AhlI ACTAGT 1 cut(s) 1333
AjiI CACGTC 1 cut(s) 314
Alw21I GWGCWC 3 cut(s) 412, 625, 1154
Alw26I GTCTC 6 cut(s) 97, 103, 492, 1353, 1441, 1542
Alw44I GTGCAC 1 cut(s) 621
AlwI GGATC 3 cut(s) 268, 510, 523
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 5 cut(s) 6, 66, 428, 907, 1092
ApaLI GTGCAC 1 cut(s) 621
ApeKI GCWGC 6 cut(s) 881, 884, 887, 1366, 1387, 1462
ApoI RAATTY 1 cut(s) 752
ArsI GACNNNNNNTTYG 6 cut(s) 125, 157, 317, 349, 1476, 1508
AspLEI GCGC 4 cut(s) 20, 40, 353, 589
AspS9I GGNCC 4 cut(s) 6, 458, 1051, 1271
AsuC2I CCSGG 2 cut(s) 226, 227
AsuHPI GGTGA 4 cut(s) 107, 761, 969, 1225
AsuII TTCGAA 1 cut(s) 1415
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 3 cut(s) 458, 1051, 1271
BaeGI GKGCMC 1 cut(s) 625
BamHI GGATCC 1 cut(s) 515
BanII GRGCYC 2 cut(s) 1154, 1313
Bbv12I GWGCWC 3 cut(s) 412, 625, 1154
BbvI GCAGC 6 cut(s) 893, 896, 899, 1353, 1399, 1449
BccI CCATC 6 cut(s) 560, 864, 1220, 1235, 1262, 1597
BceAI ACGGC 1 cut(s) 1079
BcnI CCSGG 2 cut(s) 226, 227
BcoDI GTCTC 6 cut(s) 97, 103, 492, 1353, 1441, 1542
BcuI ACTAGT 1 cut(s) 1333
BfaI CTAG 2 cut(s) 1016, 1334
BfoI RGCGCY 1 cut(s) 354
BglI GCCNNNNNGGC 1 cut(s) 1308
BisI GCNGC 6 cut(s) 882, 885, 888, 1367, 1388, 1463
BlsI GCNGC 6 cut(s) 883, 886, 889, 1368, 1389, 1464
BmcAI AGTACT 1 cut(s) 283
Bme18I GGWCC 3 cut(s) 458, 1051, 1271
BmeT110I CYCGRG 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 4 cut(s) 6, 458, 1051, 1271
BmiI GGNNCC 2 cut(s) 517, 1312
BmrI ACTGGG 2 cut(s) 1151, 1634
BmsI GCATC 5 cut(s) 574, 696, 1126, 1214, 1449
BmuI ACTGGG 2 cut(s) 1151, 1634
BplI GAGNNNNNCTC 2 cut(s) 487, 519
Bpu10I CCTNAGC 1 cut(s) 590
Bpu14I TTCGAA 1 cut(s) 1415
BpuEI CTTGAG 3 cut(s) 1335, 1561, 1667
BpuMI CCSGG 2 cut(s) 226, 227
BsaBI GATNNNNATC 1 cut(s) 1204
BsaHI GRCGYC 2 cut(s) 655, 1604
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 9 cut(s) 63, 225, 474, 820, 910, 961, 1303, 1442, 1555
BsaXI ACNNNNNCTCC 2 cut(s) 1237, 1267
Bsc4I CCNNNNNNNGG 9 cut(s) 580, 730, 782, 845, 911, 1064, 1184, 1658, 1661
Bse1I ACTGG 3 cut(s) 289, 1157, 1640
Bse8I GATNNNNATC 1 cut(s) 1204
BseDI CCNNGG 9 cut(s) 63, 225, 474, 820, 910, 961, 1303, 1442, 1555
BseGI GGATG 3 cut(s) 589, 679, 1464
BseJI GATNNNNATC 1 cut(s) 1204
BseLI CCNNNNNNNGG 9 cut(s) 580, 730, 782, 845, 911, 1064, 1184, 1658, 1661
BseMII CTCAG 3 cut(s) 114, 399, 1337
BseNI ACTGG 3 cut(s) 289, 1157, 1640
BseRI GAGGAG 2 cut(s) 494, 1162
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 6 cut(s) 893, 896, 899, 1353, 1399, 1449
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 3 cut(s) 807, 885, 1163
BshFI GGCC 5 cut(s) 8, 68, 430, 909, 1094
BsiHKAI GWGCWC 3 cut(s) 412, 625, 1154
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 2 cut(s) 81, 226
BslFI GGGAC 4 cut(s) 89, 324, 1021, 1344
BslI CCNNNNNNNGG 9 cut(s) 580, 730, 782, 845, 911, 1064, 1184, 1658, 1661
BsmAI GTCTC 6 cut(s) 97, 103, 492, 1353, 1441, 1542
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 4 cut(s) 89, 324, 1021, 1344
BsmI GAATGC 2 cut(s) 178, 253
BsnI GGCC 5 cut(s) 8, 68, 430, 909, 1094
Bso31I GGTCTC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 225
Bsp119I TTCGAA 1 cut(s) 1415
Bsp1286I GDGCHC 4 cut(s) 412, 625, 1154, 1313
Bsp143I GATC 5 cut(s) 260, 515, 1215, 1530, 1608
BspACI CCGC 2 cut(s) 634, 1480
BspANI GGCC 5 cut(s) 8, 68, 430, 909, 1094
BspCNI CTCAG 3 cut(s) 113, 398, 1336
BspHI TCATGA 1 cut(s) 1503
BspLI GGNNCC 2 cut(s) 517, 1312
BspPI GGATC 3 cut(s) 268, 510, 523
BspT104I TTCGAA 1 cut(s) 1415
BspTNI GGTCTC 1 cut(s) 103
BsrI ACTGG 3 cut(s) 289, 1157, 1640
BssECI CCNNGG 9 cut(s) 63, 225, 474, 820, 910, 961, 1303, 1442, 1555
BssMI GATC 5 cut(s) 260, 515, 1215, 1530, 1608
BssNI GRCGYC 2 cut(s) 655, 1604
BssT1I CCWWGG 5 cut(s) 63, 474, 910, 961, 1555
Bst4CI ACNGT 4 cut(s) 137, 378, 545, 1087
Bst6I CTCTTC 2 cut(s) 856, 1618
BstACI GRCGYC 2 cut(s) 655, 1604
BstBI TTCGAA 1 cut(s) 1415
BstC8I GCNNGC 5 cut(s) 597, 687, 802, 892, 1186
BstDEI CTNAG 6 cut(s) 100, 385, 425, 590, 1173, 1323
BstF5I GGATG 3 cut(s) 589, 679, 1464
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 4 cut(s) 20, 40, 353, 589
BstKTI GATC 5 cut(s) 263, 518, 1218, 1533, 1611
BstMAI GTCTC 6 cut(s) 97, 103, 492, 1353, 1441, 1542
BstMBI GATC 5 cut(s) 260, 515, 1215, 1530, 1608
BstMWI GCNNNNNNNGC 7 cut(s) 26, 35, 359, 887, 1308, 1372, 1393
BstNSI RCATGY 1 cut(s) 599
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 6 cut(s) 893, 896, 899, 1353, 1399, 1449
BstX2I RGATCY 2 cut(s) 260, 515
BstYI RGATCY 2 cut(s) 260, 515
BsuRI GGCC 5 cut(s) 8, 68, 430, 909, 1094
BtgZI GCGATG 1 cut(s) 1281
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 3 cut(s) 589, 679, 1464
BtsI GCAGTG 2 cut(s) 171, 1397
BtsIMutI CAGTG 5 cut(s) 171, 1331, 1397, 1526, 1632
Cac8I GCNNGC 5 cut(s) 597, 687, 802, 892, 1186
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 1503
CfoI GCGC 4 cut(s) 20, 40, 353, 589
Cfr13I GGNCC 4 cut(s) 6, 458, 1051, 1271
Cfr9I CCCGGG 1 cut(s) 225
CseI GACGC 2 cut(s) 644, 1593
Csp6I GTAC 5 cut(s) 59, 282, 1088, 1097, 1248
CviQI GTAC 5 cut(s) 59, 282, 1088, 1097, 1248
DdeI CTNAG 6 cut(s) 100, 385, 425, 590, 1173, 1323
DpnI GATC 5 cut(s) 262, 517, 1217, 1532, 1610
DpnII GATC 5 cut(s) 260, 515, 1215, 1530, 1608
Eam1104I CTCTTC 2 cut(s) 856, 1618
EarI CTCTTC 2 cut(s) 856, 1618
Ecl136II GAGCTC 1 cut(s) 1152
Eco130I CCWWGG 5 cut(s) 63, 474, 910, 961, 1555
Eco24I GRGCYC 2 cut(s) 1154, 1313
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 3 cut(s) 458, 1051, 1271
Eco53kI GAGCTC 1 cut(s) 1152
Eco57I CTGAAG 2 cut(s) 582, 1044
Eco88I CYCGRG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 1152
EcoT14I CCWWGG 5 cut(s) 63, 474, 910, 961, 1555
EcoT22I ATGCAT 1 cut(s) 1207
EcoT38I GRGCYC 2 cut(s) 1154, 1313
ErhI CCWWGG 5 cut(s) 63, 474, 910, 961, 1555
Esp3I CGTCTC 1 cut(s) 97
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 4 cut(s) 89, 324, 1021, 1344
Fnu4HI GCNGC 6 cut(s) 882, 885, 888, 1367, 1388, 1463
FokI GGATG 3 cut(s) 596, 686, 1471
FriOI GRGCYC 2 cut(s) 1154, 1313
Fsp4HI GCNGC 6 cut(s) 882, 885, 888, 1367, 1388, 1463
FspBI CTAG 2 cut(s) 1016, 1334
GlaI GCGC 4 cut(s) 19, 39, 352, 588
GluI GCNGC 6 cut(s) 882, 885, 888, 1367, 1388, 1463
GsaI CCCAGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 5 cut(s) 8, 68, 430, 909, 1094
HapII CCGG 2 cut(s) 81, 226
HgaI GACGC 2 cut(s) 644, 1593
HhaI GCGC 4 cut(s) 20, 40, 353, 589
Hin1I GRCGYC 2 cut(s) 655, 1604
Hin6I GCGC 4 cut(s) 18, 38, 351, 587
HinP1I GCGC 4 cut(s) 18, 38, 351, 587
HindIII AAGCTT 2 cut(s) 237, 330
HinfI GANTC 8 cut(s) 170, 356, 500, 712, 1321, 1346, 1438, 1672
HpaII CCGG 2 cut(s) 81, 226
HphI GGTGA 4 cut(s) 107, 761, 969, 1225
Hpy166II GTNNAC 2 cut(s) 461, 623
Hpy188I TCNGA 8 cut(s) 50, 129, 184, 191, 491, 660, 1210, 1594
Hpy8I GTNNAC 2 cut(s) 461, 623
Hpy99I CGWCG 1 cut(s) 1609
HpyAV CCTTC 4 cut(s) 1070, 1415, 1557, 1561
HpyCH4III ACNGT 4 cut(s) 137, 378, 545, 1087
HpyCH4IV ACGT 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 35, 359, 887, 1308, 1372, 1393
HpyF3I CTNAG 6 cut(s) 100, 385, 425, 590, 1173, 1323
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 2 cut(s) 655, 1604
HspAI GCGC 4 cut(s) 18, 38, 351, 587
Kzo9I GATC 5 cut(s) 260, 515, 1215, 1530, 1608
LmnI GCTCC 4 cut(s) 1149, 1157, 1316, 1425
Lsp1109I GCAGC 6 cut(s) 893, 896, 899, 1353, 1399, 1449
LweI GCATC 5 cut(s) 574, 696, 1126, 1214, 1449
MaeI CTAG 2 cut(s) 1016, 1334
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 293, 938
MalI GATC 5 cut(s) 262, 517, 1217, 1532, 1610
MboI GATC 5 cut(s) 260, 515, 1215, 1530, 1608
MboII GAAGA 4 cut(s) 575, 873, 1112, 1605
MfeI CAATTG 3 cut(s) 690, 1179, 1370
MflI RGATCY 2 cut(s) 260, 515
MhlI GDGCHC 4 cut(s) 412, 625, 1154, 1313
MlyI GAGTC 3 cut(s) 494, 1315, 1355
Mph1103I ATGCAT 1 cut(s) 1207
MseI TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1571
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 2 cut(s) 81, 226
MunI CAATTG 3 cut(s) 690, 1179, 1370
Mva1269I GAATGC 2 cut(s) 178, 253
MwoI GCNNNNNNNGC 7 cut(s) 26, 35, 359, 887, 1308, 1372, 1393
NciI CCSGG 2 cut(s) 226, 227
NdeII GATC 5 cut(s) 260, 515, 1215, 1530, 1608
NlaIV GGNNCC 2 cut(s) 517, 1312
NmuCI GTSAC 2 cut(s) 293, 938
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 1 cut(s) 599
NspV TTCGAA 1 cut(s) 1415
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 1503
PctI GAATGC 2 cut(s) 178, 253
PfeI GAWTC 5 cut(s) 170, 356, 712, 1438, 1672
PflMI CCANNNNNTGG 1 cut(s) 1184
PfoI TCCNGGA 1 cut(s) 1195
PkrI GCNGC 6 cut(s) 883, 886, 889, 1368, 1389, 1464
PleI GAGTC 3 cut(s) 494, 1315, 1354
PpsI GAGTC 3 cut(s) 494, 1315, 1354
Psp124BI GAGCTC 1 cut(s) 1154
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 517, 1312
PspPI GGNCC 4 cut(s) 6, 458, 1051, 1271
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 2 cut(s) 260, 515
RsaI GTAC 5 cut(s) 60, 283, 1089, 1098, 1249
RsaNI GTAC 5 cut(s) 59, 282, 1088, 1097, 1248
SacI GAGCTC 1 cut(s) 1154
SaqAI TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1571
SatI GCNGC 6 cut(s) 882, 885, 888, 1367, 1388, 1463
Sau3AI GATC 5 cut(s) 260, 515, 1215, 1530, 1608
Sau96I GGNCC 4 cut(s) 6, 458, 1051, 1271
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 3 cut(s) 494, 1315, 1355
SduI GDGCHC 4 cut(s) 412, 625, 1154, 1313
SfaNI GCATC 5 cut(s) 574, 696, 1126, 1214, 1449
SfuI TTCGAA 1 cut(s) 1415
SinI GGWCC 3 cut(s) 458, 1051, 1271
SmaI CCCGGG 1 cut(s) 227
SmlI CTYRAG 3 cut(s) 1350, 1576, 1646
SmoI CTYRAG 3 cut(s) 1350, 1576, 1646
SpeI ACTAGT 1 cut(s) 1333
SphI GCATGC 1 cut(s) 599
SsiI CCGC 2 cut(s) 634, 1480
SspMI CTAG 2 cut(s) 1016, 1334
SstI GAGCTC 1 cut(s) 1154
StyI CCWWGG 5 cut(s) 63, 474, 910, 961, 1555
TaaI ACNGT 4 cut(s) 137, 378, 545, 1087
TaiI ACGT 1 cut(s) 316
TaqI TCGA 3 cut(s) 1415, 1567, 1607
TaqII GACCGA 1 cut(s) 85
TatI WGTACW 3 cut(s) 281, 1087, 1247
TfiI GAWTC 5 cut(s) 170, 356, 712, 1438, 1672
Tru1I TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1571
Tru9I TTAA 6 cut(s) 234, 665, 702, 794, 1277, 1571
TscAI CASTG 5 cut(s) 171, 1331, 1397, 1533, 1639
TseFI GTSAC 2 cut(s) 293, 938
TseI GCWGC 6 cut(s) 881, 884, 887, 1366, 1387, 1462
Tsp45I GTSAC 2 cut(s) 293, 938
TspDTI ATGAA 4 cut(s) 315, 639, 1155, 1251
TspMI CCCGGG 1 cut(s) 225
TspRI CASTG 5 cut(s) 171, 1331, 1397, 1533, 1639
Van91I CCANNNNNTGG 1 cut(s) 1184
VneI GTGCAC 1 cut(s) 621
VpaK11BI GGWCC 3 cut(s) 458, 1051, 1271
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 1061
XmaI CCCGGG 1 cut(s) 225
XspI CTAG 2 cut(s) 1016, 1334
ZrmI AGTACT 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.