Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004499

Physical Location & Seq

Genomic Coordinates Reverse (-)

13936232 .. 13938247

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0150400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGATTCTCTGAAAAGTATACCTGCTTTGATATCAAAATGGCTATCAGCTTGCGTCTCTATGGTTGTTTCCTTGTTGCTTCTGGCCTTCCCTGGCTTCCTCAAACGTTGGTTATCTGATCCCATGACATTACAAATTGAAGAATACCATGGTATGAGTAGTCGTAATCCACTTTTCGGTGCTTTGGAGCTTTACTTGCAGAACAAGATCAGCCCCTCCACTCGACTTCTCAAAATTGCACAAACTCGGAAAGATGGTATTTTCAGCACCCACTTTTCAGACAGGCAAGAGTTTGAGGATGTGTATGAAGATATTCAGCTCAAGTGGAAGTTCAATATCATATCTAAGGAGTCCAATCATCCTTCTTTAGCATCCAAGAGAAAGCAATACTTTGAGCTTATATTTGACTTAGAACACCAGGAAAAGGTCATGAATTCTTACTTGCCTTATGTTTTGGAGAGATTTAAGGCCATGAGGGAGGAAAGAAAGCTTGTCAAGCTGCATACCCTTGCAAGGTTAGATCCTTTTAAAATCAAATGGGATGCAATCAATCTCGAACACCCTGCAACGTTTGAAACTTTAGCCATGGATTTGGAGCTGAAGACAGCTGTTTTGGAGGATTTGGAAAAGTTTGTTAAGAGGAAAGAGTTCTATCAAAAAGTGGGAAGGGCTTGGAAGCGAGGGTATCTTTTATATGGTCCTCCAGGCACTGGTAAATCGTCGCTTGTAGCTGCCATAGCTAATTACCTCAAGTTTGATATCTATGATTTGCAGCTCACACATTTGAAATCAGATATGGAATTGAGAAAAGCATTGATTGCAACAACTAATAAATCTATACTTGTGATTGAGGATATTGATTGTAGTCAGGCGGAGCTACAAGATCGAAACTATGGTAAGGGCAGTAAGAAAAATGAGTCTGAAGGCCAGCAGATTACGCTATCTGGACTACTAAACTTCACAGATGGCCTGTGGTCTAGTTGTGGAGAAGAAAGAATCTTCATATTCACTACCAATCACAAGAGCAAACTAGACCCTGCATTGCTCCGATCAGGACGAATGGACATGCACATCCACATGTCGTATTGCTCGTATGAGGGCTTTAAAACATTGGCCTCAAATTACCTGGGAATTTGTGGACACCACCCCTTGTTTGAGAAGATTGAAAGCCTGCTAAAAAATACAAAGGTCACTCCTGCACAAGTCGCTGAGGCGCTAATGAAGAGTGAGGATGCTGAAGTAGCACTCCAGGGTCTGATCACTCTGCTAAAGGAAAAGAGATACAAGGGGGATGAGTACCGAGATGAAGGTGCAGAGGAGCATCTAACATATTTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

446

Amino Acids

51.39

Weight (kDa)

7.65

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	33 - 111	4.7e-14	Domain associated at C-terminal with AAA
AAA	PF00004	229 - 361	5.6e-21	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	363 - 427	8e-24	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11200 AT4G21570
fragaria_vesca	FvH4_3g04241 FvH4_3g20851 FvH4_3g20851
malus_domestica	MD03G1219900.v1.1 MD05G1324000.v1.1 MD10G1301700.v1.1
prunus_persica	Prupe.4G038200_v2.0.a1 Prupe.4G038200_v2.0.a1 Prupe.4G188900_v2.0.a1
pyrus_communis	pycom03g16930 pycom05g29830 pycom10g25450
rosa_chinensis	RchiOBHm_Chr5g0006631 RchiOBHm_Chr5g0035181
rosa_laevigata	RLG00000031408 RLG00000033604
rosa_multiflora	Rmu_sc0001972.1_g000010
rosa_roxburghii	Rroxscaffold_1G00045240 Rroxscaffold_1G00069370
rosa_rugosa	Rorug04G0423400 Rorug05G0150400
rosa_samantha	Rh5AG243400 Rh5BG049900 Rh5BG242900 Rh5CG058300 Rh5CG274500 Rh5DG049400 Rh5DG251700
rosa_wichuraiana	Rw5G005060 Rw5G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	1 cut(s)	872
AclI	AACGTT	2 cut(s)	106, 569
AclWI	GGATC	2 cut(s)	113, 515
AcsI	RAATTY	2 cut(s)	433, 1131
AcuI	CTGAAG	3 cut(s)	620, 942, 1257
AfaI	GTAC	1 cut(s)	1298
AfiI	CCNNNNNNNGG	4 cut(s)	176, 424, 513, 710
AflIII	ACRYGT	1 cut(s)	1077
AgsI	TTSAA	5 cut(s)	140, 334, 575, 787, 1166
AjnI	CCWGG	5 cut(s)	91, 417, 703, 1125, 1248
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	113, 515
AlwNI	CAGNNNCTG	2 cut(s)	710, 1255
AoxI	GGCC	5 cut(s)	84, 468, 925, 967, 1113
ApeKI	GCWGC	3 cut(s)	499, 731, 772
ApoI	RAATTY	2 cut(s)	433, 1131
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	2 cut(s)	312, 647
AspLEI	GCGC	1 cut(s)	1216
AspS9I	GGNCC	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	608
BbvCI	CCTCAGC	1 cut(s)	1209
BbvI	GCAGC	3 cut(s)	486, 718, 784
BccI	CCATC	2 cut(s)	248, 959
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	5 cut(s)	93, 419, 705, 1127, 1250
BclI	TGATCA	1 cut(s)	1257
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	978, 1031
BfoI	RGCGCY	1 cut(s)	1217
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	500, 732, 773
BlsI	GCNGC	3 cut(s)	501, 733, 774
Bme1390I	CCNGG	5 cut(s)	93, 419, 705, 1127, 1250
Bme18I	GGWCC	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	698
BmrFI	CCNGG	5 cut(s)	93, 419, 705, 1127, 1250
BmsI	GCATC	4 cut(s)	380, 532, 1222, 1330
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	2 cut(s)	687, 1232
Bpu10I	CCTNAGC	1 cut(s)	1209
BpuEI	CTTGAG	2 cut(s)	305, 734
BsaJI	CCNNGG	5 cut(s)	91, 148, 585, 1126, 1249
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 424, 513, 710
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	1 cut(s)	1040
BseBI	CCWGG	5 cut(s)	93, 419, 705, 1127, 1250
BseDI	CCNNGG	5 cut(s)	91, 148, 585, 1126, 1249
BseGI	GGATG	7 cut(s)	304, 358, 371, 547, 1071, 1237, 1297
BseLI	CCNNNNNNNGG	4 cut(s)	176, 424, 513, 710
BseMI	GCAATG	1 cut(s)	1040
BseMII	CTCAG	1 cut(s)	1200
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	1 cut(s)	1331
BseXI	GCAGC	3 cut(s)	486, 718, 784
BsgI	GTGCAG	2 cut(s)	1182, 1332
BshFI	GGCC	5 cut(s)	86, 470, 927, 969, 1115
BslI	CCNNNNNNNGG	4 cut(s)	176, 424, 513, 710
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	5 cut(s)	86, 470, 927, 969, 1115
Bsp143I	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
Bsp19I	CCATGG	2 cut(s)	148, 585
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	5 cut(s)	86, 470, 927, 969, 1115
BspCNI	CTCAG	1 cut(s)	1201
BspHI	TCATGA	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	113, 515
BsrDI	GCAATG	1 cut(s)	1040
BsrI	ACTGG	1 cut(s)	715
BssECI	CCNNGG	5 cut(s)	91, 148, 585, 1126, 1249
BssMI	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
BssNAI	GTATAC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	148, 585
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	5 cut(s)	93, 419, 705, 1127, 1250
Bst6I	CTCTTC	1 cut(s)	1217
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	52, 929, 1172
BstDEI	CTNAG	3 cut(s)	345, 409, 1209
BstDSI	CCRYGG	2 cut(s)	148, 585
BstF5I	GGATG	7 cut(s)	304, 358, 371, 547, 1071, 1237, 1297
BstH2I	RGCGCY	1 cut(s)	1217
BstHHI	GCGC	1 cut(s)	1216
BstKTI	GATC	6 cut(s)	121, 210, 523, 886, 1052, 1260
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
BstMWI	GCNNNNNNNGC	7 cut(s)	196, 496, 737, 818, 937, 1205, 1241
BstNI	CCWGG	5 cut(s)	93, 419, 705, 1127, 1250
BstNSI	RCATGY	2 cut(s)	1069, 1081
BstSCI	CCNGG	5 cut(s)	91, 417, 703, 1125, 1248
BstV1I	GCAGC	3 cut(s)	486, 718, 784
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	520
BstZ17I	GTATAC	1 cut(s)	20
BsuRI	GGCC	5 cut(s)	86, 470, 927, 969, 1115
BtgI	CCRYGG	2 cut(s)	148, 585
BtsCI	GGATG	7 cut(s)	304, 358, 371, 547, 1071, 1237, 1297
BtsIMutI	CAGTG	1 cut(s)	708
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	52, 929, 1172
CaiI	CAGNNNCTG	2 cut(s)	710, 1255
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	1216
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	1297
CviAII	CATG	7 cut(s)	124, 149, 430, 472, 586, 1066, 1078
CviQI	GTAC	1 cut(s)	1297
DdeI	CTNAG	3 cut(s)	345, 409, 1209
DpnI	GATC	6 cut(s)	120, 209, 522, 885, 1051, 1259
DpnII	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
DraI	TTTAAA	2 cut(s)	529, 1105
Eam1104I	CTCTTC	1 cut(s)	1217
EarI	CTCTTC	1 cut(s)	1217
EciI	GGCGGA	1 cut(s)	887
Eco130I	CCWWGG	2 cut(s)	148, 585
Eco32I	GATATC	2 cut(s)	33, 760
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	3 cut(s)	620, 942, 1257
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	5 cut(s)	91, 417, 703, 1125, 1248
EcoRV	GATATC	2 cut(s)	33, 760
EcoT14I	CCWWGG	2 cut(s)	148, 585
ErhI	CCWWGG	2 cut(s)	148, 585
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	7 cut(s)	127, 152, 433, 475, 589, 1069, 1081
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	7 cut(s)	123, 148, 429, 471, 585, 1065, 1077
FbaI	TGATCA	1 cut(s)	1257
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	500, 732, 773
FokI	GGATG	7 cut(s)	311, 345, 358, 554, 1058, 1244, 1304
Fsp4HI	GCNGC	3 cut(s)	500, 732, 773
FspBI	CTAG	2 cut(s)	978, 1031
GlaI	GCGC	1 cut(s)	1215
GluI	GCNGC	3 cut(s)	500, 732, 773
GsuI	CTGGAG	2 cut(s)	687, 1232
HaeII	RGCGCY	1 cut(s)	1217
HaeIII	GGCC	5 cut(s)	86, 470, 927, 969, 1115
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	1216
Hin1II	CATG	7 cut(s)	127, 152, 433, 475, 589, 1069, 1081
Hin6I	GCGC	1 cut(s)	1214
HinP1I	GCGC	1 cut(s)	1214
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	5, 350, 917, 996
Hpy166II	GTNNAC	2 cut(s)	20, 1139
Hpy188I	TCNGA	8 cut(s)	12, 118, 249, 280, 793, 922, 1049, 1257
Hpy188III	TCNNGA	4 cut(s)	430, 554, 945, 1053
Hpy8I	GTNNAC	2 cut(s)	20, 1139
Hpy99I	CGWCG	1 cut(s)	724
HpyAV	CCTTC	5 cut(s)	97, 372, 660, 917, 1301
HpyCH4IV	ACGT	2 cut(s)	106, 569
HpyF10VI	GCNNNNNNNGC	7 cut(s)	196, 496, 737, 818, 937, 1205, 1241
HpyF3I	CTNAG	3 cut(s)	345, 409, 1209
HpySE526I	ACGT	2 cut(s)	106, 569
Hsp92II	CATG	7 cut(s)	127, 152, 433, 475, 589, 1069, 1081
HspAI	GCGC	1 cut(s)	1214
Ksp22I	TGATCA	1 cut(s)	1257
Kzo9I	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
LmnI	GCTCC	5 cut(s)	187, 595, 874, 1050, 1318
Lsp1109I	GCAGC	3 cut(s)	486, 718, 784
LweI	GCATC	4 cut(s)	380, 532, 1222, 1330
MaeI	CTAG	2 cut(s)	978, 1031
MaeII	ACGT	2 cut(s)	106, 569
MaeIII	GTNAC	1 cut(s)	1189
MalI	GATC	6 cut(s)	120, 209, 522, 885, 1051, 1259
MboI	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
MboII	GAAGA	7 cut(s)	152, 320, 613, 991, 1001, 1171, 1234
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	7 cut(s)	135, 234, 433, 742, 800, 1120, 1131
MlyI	GAGTC	2 cut(s)	359, 926
MroXI	GAANNNNTTC	2 cut(s)	312, 647
MseI	TTAA	4 cut(s)	465, 528, 636, 1104
MslI	CAYNNNNRTG	1 cut(s)	1076
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	5 cut(s)	93, 419, 705, 1127, 1250
MvaI	CCWGG	5 cut(s)	93, 419, 705, 1127, 1250
MwoI	GCNNNNNNNGC	7 cut(s)	196, 496, 737, 818, 937, 1205, 1241
NcoI	CCATGG	2 cut(s)	148, 585
NdeII	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
NlaIII	CATG	7 cut(s)	127, 152, 433, 475, 589, 1069, 1081
NmuCI	GTSAC	1 cut(s)	1189
NspI	RCATGY	2 cut(s)	1069, 1081
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	1 cut(s)	1088
PdmI	GAANNNNTTC	2 cut(s)	312, 647
PfeI	GAWTC	2 cut(s)	5, 996
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	3 cut(s)	501, 733, 774
PleI	GAGTC	2 cut(s)	358, 925
PpsI	GAGTC	2 cut(s)	358, 925
PscI	ACATGT	1 cut(s)	1077
Psp1406I	AACGTT	2 cut(s)	106, 569
Psp6I	CCWGG	5 cut(s)	91, 417, 703, 1125, 1248
PspGI	CCWGG	5 cut(s)	91, 417, 703, 1125, 1248
PspPI	GGNCC	1 cut(s)	698
PstNI	CAGNNNCTG	2 cut(s)	710, 1255
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	1298
RsaNI	GTAC	1 cut(s)	1297
RseI	CAYNNNNRTG	1 cut(s)	1076
SaqAI	TTAA	4 cut(s)	465, 528, 636, 1104
SatI	GCNGC	3 cut(s)	500, 732, 773
Sau3AI	GATC	6 cut(s)	118, 207, 520, 883, 1049, 1257
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	2 cut(s)	359, 926
ScrFI	CCNGG	5 cut(s)	93, 419, 705, 1127, 1250
SfaNI	GCATC	4 cut(s)	380, 532, 1222, 1330
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	1076
SmlI	CTYRAG	2 cut(s)	320, 749
SmoI	CTYRAG	2 cut(s)	320, 749
Sse9I	AATT	7 cut(s)	135, 234, 433, 742, 800, 1120, 1131
SsiI	CCGC	1 cut(s)	872
SspMI	CTAG	2 cut(s)	978, 1031
StyD4I	CCNGG	5 cut(s)	91, 417, 703, 1125, 1248
StyI	CCWWGG	2 cut(s)	148, 585
TaiI	ACGT	2 cut(s)	109, 572
TaqI	TCGA	3 cut(s)	223, 555, 886
TasI	AATT	7 cut(s)	135, 234, 433, 742, 800, 1120, 1131
TfiI	GAWTC	2 cut(s)	5, 996
Tru1I	TTAA	4 cut(s)	465, 528, 636, 1104
Tru9I	TTAA	4 cut(s)	465, 528, 636, 1104
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	1189
TseI	GCWGC	3 cut(s)	499, 731, 772
Tsp45I	GTSAC	1 cut(s)	1189
TspDTI	ATGAA	5 cut(s)	321, 446, 991, 1235, 1320
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	698
XapI	RAATTY	2 cut(s)	433, 1131
XceI	RCATGY	2 cut(s)	1069, 1081
XmiI	GTMKAC	1 cut(s)	19
XmnI	GAANNNNTTC	2 cut(s)	312, 647
XspI	CTAG	2 cut(s)	978, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.