AT4G21570

Transmembrane protein 184 homolog DDB_G0279555-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004499
Physical Location & Seq
Reverse (-)
11470761 .. 11473037
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21570.2

Sequence Viewer

Length: 885 bp
ATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATTGCTCGGCGTTTTCCGTCTTGCTCACACTTCATTTCACGATACAGCTTGTATCGCAGCATCTCTTCCACTGGAAGAACCCTAAGGAACAAAAGGCTATACTCATCATTGTGCTTATGGCTCCTATCTACGCCGTTGTTTCCTTTATTGGTTTGTTAGAAGTCAAAGGAAGTGAAACCTTCTTCCTCTTTCTTGAATCCATCAAAGAATGCTACGAAGCTCTTGTCATTGCCAAATTCTTGGCATTGATGTATAGTTATCTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAAGGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTTCAGCCTCATGTAGTCCGTTTGGATCGTCACACTCTTAAACTTTTGAAATACTGGACATGGCAATTTGTGGTCATTCGACCCGTGTGCTCCACTTTGATGATAGCTTTACAGCTCATCGGGTTTTATCCTTCATGGTTGAGCTGGACATTCACTATCATTGTCAATTTCTCGGTTTCTCTGGCCTTGTATTCTCTTGTGATATTCTACCATGTGTTTGCTAAGGAGCTTGCTCCTCATAATCCACTCGCAAAGTTCCTCTGCATCAAAGGAATTGTCTTCTTTGTCTTTTGGCAGGGAATAGCACTAGACATACTGGTGGCAATGGGATTCATAAAATCTCACCATTTCTGGTTGGAGGTAGAACAAATCCAAGAAGCAATTCAGAATGTGTTGGTATGTCTTGAGATGGTTATCTTCGCTGCGGTTCAGAAACACGCTTATCATGCTGGTCCTTATAGCGGCGAGACCAAGAAGAAACTCGATAAAAAGACCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

294

Amino Acids

33.99

Weight (kDa)

9.05

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 15 - 230 5.1e-57 Organic solute transporter Ostalpha
Solute_trans_a PF03619 246 - 311 5.9e-12 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 809, 846
AclWI GGATC 1 cut(s) 417
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 845
AgsI TTSAA 2 cut(s) 239, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AluBI AGCT 6 cut(s) 91, 263, 491, 499, 528, 613
AluI AGCT 6 cut(s) 91, 263, 491, 499, 528, 613
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 1 cut(s) 417
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 100, 806
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 4 cut(s) 252, 284, 645, 677
Asp700I GAANNNNTTC 1 cut(s) 765
AspS9I GGNCC 2 cut(s) 7, 836
AsuHPI GGTGA 2 cut(s) 353, 719
AvaII GGWCC 2 cut(s) 7, 836
AxyI CCTNAGG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 112, 793
BccI CCATC 3 cut(s) 251, 332, 787
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 1 cut(s) 692
BisI GCNGC 3 cut(s) 101, 807, 847
BlsI GCNGC 3 cut(s) 102, 808, 848
Bme18I GGWCC 2 cut(s) 7, 836
BmgT120I GGNCC 2 cut(s) 7, 836
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 2 cut(s) 112, 657
BpiI GAAGAC 1 cut(s) 655
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 809
BsaBI GATNNNNATC 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 845
Bsc4I CCNNNNNNNGG 1 cut(s) 845
Bse1I ACTGG 3 cut(s) 119, 443, 705
Bse21I CCTNAGG 1 cut(s) 126
Bse3DI GCAATG 2 cut(s) 270, 714
Bse8I GATNNNNATC 1 cut(s) 797
BseJI GATNNNNATC 1 cut(s) 797
BseLI CCNNNNNNNGG 1 cut(s) 845
BseMI GCAATG 2 cut(s) 270, 714
BseNI ACTGG 3 cut(s) 119, 443, 705
BseRI GAGGAG 1 cut(s) 609
BseXI GCAGC 2 cut(s) 112, 793
BshFI GGCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 845
BsmAI GTCTC 1 cut(s) 845
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 2 cut(s) 33, 409
BspACI CCGC 2 cut(s) 809, 846
BspANI GGCC 1 cut(s) 569
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 845
BsrDI GCAATG 2 cut(s) 270, 714
BsrI ACTGG 3 cut(s) 119, 443, 705
BssMI GATC 2 cut(s) 33, 409
Bst6I CTCTTC 2 cut(s) 113, 346
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 2 cut(s) 126, 606
BstKTI GATC 2 cut(s) 36, 412
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 2 cut(s) 33, 409
BstMWI GCNNNNNNNGC 2 cut(s) 97, 830
BstV1I GCAGC 2 cut(s) 112, 793
BstV2I GAAGAC 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 1 cut(s) 569
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 615
Cfr13I GGNCC 2 cut(s) 7, 836
CviAII CATG 5 cut(s) 395, 444, 519, 596, 830
DdeI CTNAG 2 cut(s) 126, 606
DpnI GATC 2 cut(s) 35, 411
DpnII GATC 2 cut(s) 33, 409
Eam1104I CTCTTC 2 cut(s) 113, 346
EarI CTCTTC 2 cut(s) 113, 346
Eco31I GGTCTC 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 7, 836
Eco57I CTGAAG 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 126
FaeI CATG 5 cut(s) 398, 447, 522, 599, 833
FatI CATG 5 cut(s) 394, 443, 518, 595, 829
Fnu4HI GCNGC 3 cut(s) 101, 807, 847
Fsp4HI GCNGC 3 cut(s) 101, 807, 847
FspBI CTAG 1 cut(s) 692
GluI GCNGC 3 cut(s) 101, 807, 847
HaeIII GGCC 1 cut(s) 569
Hin1II CATG 5 cut(s) 398, 447, 522, 599, 833
HinfI GANTC 5 cut(s) 239, 342, 358, 379, 714
HphI GGTGA 2 cut(s) 353, 719
Hpy188I TCNGA 2 cut(s) 771, 816
Hpy188III TCNNGA 3 cut(s) 82, 236, 788
HpyAV CCTTC 2 cut(s) 232, 525
HpyCH4V TGCA 1 cut(s) 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 830
HpyF3I CTNAG 2 cut(s) 126, 606
Hsp92II CATG 5 cut(s) 398, 447, 522, 599, 833
Kzo9I GATC 2 cut(s) 33, 409
LmnI GCTCC 4 cut(s) 169, 479, 610, 622
LpnPI CCDG 9 cut(s) 100, 348, 424, 514, 551, 665, 686, 721, 819
Lsp1109I GCAGC 2 cut(s) 112, 793
LweI GCATC 2 cut(s) 112, 657
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 1 cut(s) 413
MalI GATC 2 cut(s) 35, 411
MboI GATC 2 cut(s) 33, 409
MboII GAAGA 7 cut(s) 100, 130, 217, 363, 655, 793, 871
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 5 cut(s) 278, 449, 550, 657, 765
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 720
MnlI CCTC 6 cut(s) 36, 239, 402, 630, 653, 736
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 4 cut(s) 152, 314, 482, 701
Mva1269I GAATGC 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 97, 830
NdeII GATC 2 cut(s) 33, 409
NlaIII CATG 5 cut(s) 398, 447, 522, 599, 833
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 413
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 4 cut(s) 239, 342, 358, 714
PkrI GCNGC 3 cut(s) 102, 808, 848
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 7, 836
RseI CAYNNNNRTG 4 cut(s) 152, 314, 482, 701
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 101, 807, 847
Sau3AI GATC 2 cut(s) 33, 409
Sau96I GGNCC 2 cut(s) 7, 836
SchI GAGTC 1 cut(s) 373
SduI GDGCHC 1 cut(s) 476
SetI ASST 9 cut(s) 12, 93, 224, 265, 493, 501, 530, 615, 747
SfaNI GCATC 2 cut(s) 112, 657
SinI GGWCC 2 cut(s) 7, 836
SmiMI CAYNNNNRTG 4 cut(s) 152, 314, 482, 701
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 5 cut(s) 278, 449, 550, 657, 765
SsiI CCGC 2 cut(s) 809, 846
SspMI CTAG 1 cut(s) 692
TaqI TCGA 2 cut(s) 463, 867
TasI AATT 5 cut(s) 278, 449, 550, 657, 765
TauI GCSGC 1 cut(s) 849
TfiI GAWTC 4 cut(s) 239, 342, 358, 714
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 100, 806
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 65, 507, 706
TspGWI ACGGA 2 cut(s) 49, 392
TspRI CASTG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 7, 836
XapI RAATTY 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.