RchiOBHm_Chr5g0006631

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004499
Physical Location & Seq
Reverse (-)
4135189 .. 4139567
4379 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28773

Sequence Viewer

Length: 888 bp
ATGGATTTGAGTACAATGGATCGCGGGCAGTTGACCCTGCTAGGATCAGCTGGTTGTGTGATGCTCACAATGCATTTCACAGTCCAGTTATTGTCGCAACATCTCTTTTACTGGAAGAACCCAAAGGAACAGAAAGCTATAATAATTATCATTCTTATGGCTCCACTATATGCAATTGACTCATTTGTAGGTTTATTGGATATTCAAGGAAGCAAAGCAGTTTTCATGCTCTTAGACTCTATTAAGGAGTGTTATGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTAATGTATAGTTACCTGAACATATCTATAAGCAAAAGTATTGTGCCAGACGAAATCAAAGGAAGAGAAATCCACCACTCTTTTCCAATGACTCTTTTTCAGCCTCACACTATTCGGCTAAACCACCAAACCCTGAAGCTACTCAAATATTGGACTTGGCAGTTCGTCGTCATCCGCCCAGTTTTTTCTGTTTTGATGATAACACTACAAGTACTTGGAGTTTATCCCAGTTGGTTGAGCTGGACCTTCACTATCATTCTTAATGTTTCCGTTTCATTGGCATTGTACTCTCTGGTTGTGTTTTACCATGTGTTTCCAAAGGAACTGGAACCACATAAACCCCTTGCAAAGTTCATGTGCATCAAGGGAATTGTCTTCTTCTGCTTTTGGCAGGGAGTGGTCCTTGAGATATTAGCTGCTATCGGTATCATTCGATCTCATCATTTCTGGTTGGATGTGGAGCACATTGAAGAAGCTATTCAGAATGTCTTGGTATGTCTTGAGATGGTCGTCTTCTCTGTTCTCCAGCAGTATGCCTACCATGTTGCACCTTACAGTGGAGACGTCGAAACAAAGATGAGATTAAACAAGAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

295

Amino Acids

34.06

Weight (kDa)

8.19

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 16 - 280 1e-74 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 852
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 24, 460
AclWI GGATC 2 cut(s) 27, 52
AcuI CTGAAG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 849
AfaI GTAC 3 cut(s) 13, 498, 572
AfiI CCNNNNNNNGG 1 cut(s) 842
AgsI TTSAA 2 cut(s) 206, 755
AluBI AGCT 6 cut(s) 50, 137, 424, 525, 701, 761
AluI AGCT 6 cut(s) 50, 137, 424, 525, 701, 761
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 2 cut(s) 27, 52
ApeKI GCWGC 1 cut(s) 701
Asp700I GAANNNNTTC 1 cut(s) 762
AspS9I GGNCC 2 cut(s) 528, 685
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 2 cut(s) 528, 685
BbsI GAAGAC 2 cut(s) 652, 790
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 688
BccI CCATC 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
BmcAI AGTACT 1 cut(s) 498
Bme18I GGWCC 2 cut(s) 528, 685
BmgT120I GGNCC 2 cut(s) 528, 685
BmiI GGNNCC 2 cut(s) 162, 615
BmrI ACTGGG 2 cut(s) 458, 507
BmsI GCATC 2 cut(s) 51, 654
BmuI ACTGGG 2 cut(s) 458, 507
BpiI GAAGAC 2 cut(s) 652, 790
BpmI CTGGAG 1 cut(s) 794
BpuEI CTTGAG 2 cut(s) 710, 806
BsaHI GRCGYC 1 cut(s) 849
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 5 cut(s) 85, 116, 464, 513, 615
BseGI GGATG 2 cut(s) 456, 745
BseLI CCNNNNNNNGG 1 cut(s) 842
BseNI ACTGG 5 cut(s) 85, 116, 464, 513, 615
BseXI GCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 840
BsmBI CGTCTC 1 cut(s) 840
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 3 cut(s) 19, 44, 719
BspACI CCGC 2 cut(s) 24, 460
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 162, 615
BspPI GGATC 2 cut(s) 27, 52
BsrI ACTGG 5 cut(s) 85, 116, 464, 513, 615
BssMI GATC 3 cut(s) 19, 44, 719
BssNI GRCGYC 1 cut(s) 849
Bst4CI ACNGT 2 cut(s) 82, 842
Bst6I CTCTTC 1 cut(s) 343
BstACI GRCGYC 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 232, 273
BstF5I GGATG 2 cut(s) 456, 745
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 22, 47, 722
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 3 cut(s) 19, 44, 719
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 2 cut(s) 652, 790
BtsCI GGATG 2 cut(s) 456, 745
BtsIMutI CAGTG 1 cut(s) 847
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 528, 685
Csp6I GTAC 3 cut(s) 12, 497, 571
CviAII CATG 4 cut(s) 226, 593, 640, 827
CviQI GTAC 3 cut(s) 12, 497, 571
DdeI CTNAG 2 cut(s) 232, 273
DpnI GATC 3 cut(s) 21, 46, 721
DpnII GATC 3 cut(s) 19, 44, 719
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
EciI GGCGGA 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 528, 685
Eco57I CTGAAG 1 cut(s) 440
EcoT22I ATGCAT 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 4 cut(s) 229, 596, 643, 830
FatI CATG 4 cut(s) 225, 592, 639, 826
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 2 cut(s) 443, 752
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 794
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 4 cut(s) 229, 596, 643, 830
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 179, 236, 376
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 768
Hpy188III TCNNGA 1 cut(s) 785
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 2 cut(s) 455, 854
HpyAV CCTTC 2 cut(s) 541, 874
HpyCH4III ACNGT 2 cut(s) 82, 842
HpyCH4IV ACGT 1 cut(s) 849
HpyCH4V TGCA 5 cut(s) 73, 173, 632, 645, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 232, 273
HpySE526I ACGT 1 cut(s) 849
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 4 cut(s) 229, 596, 643, 830
Kzo9I GATC 3 cut(s) 19, 44, 719
LmnI GCTCC 2 cut(s) 166, 745
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 2 cut(s) 51, 654
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 1 cut(s) 296
MalI GATC 3 cut(s) 21, 46, 721
MboI GATC 3 cut(s) 19, 44, 719
MboII GAAGA 6 cut(s) 127, 360, 652, 655, 767, 790
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 3 cut(s) 144, 174, 654
MlyI GAGTC 3 cut(s) 173, 230, 370
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 2 cut(s) 250, 399
Mph1103I ATGCAT 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 3 cut(s) 243, 546, 869
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 50
MunI CAATTG 1 cut(s) 174
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 3 cut(s) 19, 44, 719
NlaIII CATG 4 cut(s) 229, 596, 643, 830
NlaIV GGNNCC 2 cut(s) 162, 615
NsiI ATGCAT 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 762
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 3 cut(s) 173, 230, 370
PpsI GAGTC 3 cut(s) 173, 230, 370
PspN4I GGNNCC 2 cut(s) 162, 615
PspPI GGNCC 2 cut(s) 528, 685
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 3 cut(s) 13, 498, 572
RsaNI GTAC 3 cut(s) 12, 497, 571
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 243, 546, 869
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 3 cut(s) 19, 44, 719
Sau96I GGNCC 2 cut(s) 528, 685
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 3 cut(s) 173, 230, 370
SduI GDGCHC 1 cut(s) 750
SfaNI GCATC 2 cut(s) 51, 654
SinI GGWCC 2 cut(s) 528, 685
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 689, 785
SmoI CTYRAG 2 cut(s) 689, 785
Sse9I AATT 3 cut(s) 144, 174, 654
SsiI CCGC 2 cut(s) 24, 460
SspI AATATT 1 cut(s) 434
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 82, 842
TaiI ACGT 1 cut(s) 852
TaqI TCGA 2 cut(s) 718, 852
TasI AATT 3 cut(s) 144, 174, 654
TatI WGTACW 3 cut(s) 11, 496, 570
Tru1I TTAA 3 cut(s) 243, 546, 869
Tru9I TTAA 3 cut(s) 243, 546, 869
TscAI CASTG 1 cut(s) 847
TseI GCWGC 1 cut(s) 701
TspDTI ATGAA 3 cut(s) 214, 549, 628
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 1 cut(s) 847
VpaK11BI GGWCC 2 cut(s) 528, 685
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 850
ZrmI AGTACT 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.