Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004499

Physical Location & Seq

Genomic Coordinates Forward (+)

30184658 .. 30186088

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATTTTAGTACAATGGATCGTGGCCAGTTGACCCTGCTAGGATCCGCAGGTTGTGTGATGCTCACAATGCATTTCACAATACAGTTATTGTCGCAACATCTCTTTTACTGGAAGAACCCGAAGGAGCAGAAGGCGATAATAATTATTATTCTTATGGCTCCTATATATGCAGTTGACTCCTTTGTGGGTTTATTGGATATTAAGGGAAGCAAAACATTTTTCATGTTTTTGGACTCTATTAAGGAATGTTACGAGGCTTTGGTAATTGCTAAGTTCTTGGCTCTTATGTATAGTTACCTGAAGATATCCATAAGCAAAAATATCGTGCCAGATGAAATCAAAGGAAGAGAAATTCACCACTCGTTTCCTATGACTCTTTTTCAGCCTCGCACTGTTCGGTTAAACCACCAGACCCTGAAGCTACTCAAATATTGGACGTGGCAGTTTGTCATCATACGCCCAGTTTGTTCTGTTTTGATGATAACTCTACAAGGACTTGGGCTGTACCCCAGTTGGTTGGGCTGGACCTTCACTGTGATTCTTAACCTTTCTGTTTCCTTAGCATTGTACTCTCTAGTGCTGTTTTACCATGTGTTTGCAAAGGAATTGGCACCGCATTCGCCCCTTGCAAAGTTCCTGTGCATCAAGGGAATTGTCTTCTTCGTCTTTTGGCAGGGAGTGGTCATTGACATATTAGCTGCTGTGGGCGTCATTCGATCTCACCATTTCTGGTTAGATGTGGAGCACATCGAGGAAGCTATTCAAAATGTCTTGACATGTTTGGAGATGGTTGTGTTTTCGGTTCTTCAGCAATATGCGTACCACGTTGCTCCTTACAGCGGAGACGTGGAGAAGAAGATGTTAAACAAGAAGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

295

Amino Acids

33.89

Weight (kDa)

8.84

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11200 AT4G21570
fragaria_vesca	FvH4_3g04241 FvH4_3g20851 FvH4_3g20851
malus_domestica	MD03G1219900.v1.1 MD05G1324000.v1.1 MD10G1301700.v1.1
prunus_persica	Prupe.4G038200_v2.0.a1 Prupe.4G038200_v2.0.a1 Prupe.4G188900_v2.0.a1
pyrus_communis	pycom03g16930 pycom05g29830 pycom10g25450
rosa_chinensis	RchiOBHm_Chr5g0006631 RchiOBHm_Chr5g0035181
rosa_laevigata	RLG00000031408 RLG00000033604
rosa_multiflora	Rmu_sc0001972.1_g000010
rosa_roxburghii	Rroxscaffold_1G00045240 Rroxscaffold_1G00069370
rosa_rugosa	Rorug04G0423400 Rorug05G0150400
rosa_samantha	Rh5AG243400 Rh5BG049900 Rh5BG242900 Rh5CG058300 Rh5CG274500 Rh5DG049400 Rh5DG251700
rosa_wichuraiana	Rw5G005060 Rw5G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	613
AciI	CCGC	3 cut(s)	48, 617, 843
AclWI	GGATC	3 cut(s)	27, 39, 52
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	3 cut(s)	323, 440, 794
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	4 cut(s)	13, 509, 572, 824
AfiI	CCNNNNNNNGG	1 cut(s)	842
AflIII	ACRYGT	1 cut(s)	779
AgsI	TTSAA	1 cut(s)	767
AjiI	CACGTC	2 cut(s)	441, 850
AluBI	AGCT	3 cut(s)	424, 701, 761
AluI	AGCT	3 cut(s)	424, 701, 761
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	1 cut(s)	840
AlwI	GGATC	3 cut(s)	27, 39, 52
AlwNI	CAGNNNCTG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	1 cut(s)	354
Asp700I	GAANNNNTTC	1 cut(s)	762
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	350, 716
AvaII	GGWCC	1 cut(s)	528
BalI	TGGCCA	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	1 cut(s)	784
BcgI	CGANNNNNNTGC	4 cut(s)	307, 341, 603, 637
BcoDI	GTCTC	1 cut(s)	840
BfaI	CTAG	2 cut(s)	41, 578
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme18I	GGWCC	1 cut(s)	528
BmgBI	CACGTC	2 cut(s)	441, 850
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	3 cut(s)	46, 162, 615
BmrI	ACTGGG	2 cut(s)	458, 507
BmsI	GCATC	2 cut(s)	51, 654
BmuI	ACTGGG	2 cut(s)	458, 507
BpiI	GAAGAC	1 cut(s)	652
Bpu10I	CCTNAGC	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse1I	ACTGG	4 cut(s)	28, 116, 464, 513
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseNI	ACTGG	4 cut(s)	28, 116, 464, 513
BseXI	GCAGC	1 cut(s)	688
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	750
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmAI	GTCTC	1 cut(s)	840
BsmBI	CGTCTC	1 cut(s)	840
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	3 cut(s)	19, 44, 719
BspACI	CCGC	3 cut(s)	48, 617, 843
BspANI	GGCC	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	46, 162, 615
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	3 cut(s)	27, 39, 52
BspT107I	GGYRCC	1 cut(s)	613
BsrI	ACTGG	4 cut(s)	28, 116, 464, 513
BssMI	GATC	3 cut(s)	19, 44, 719
BssNI	GRCGYC	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	87, 397, 538
Bst6I	CTCTTC	2 cut(s)	343, 869
BstACI	GRCGYC	1 cut(s)	711
BstDEI	CTNAG	2 cut(s)	273, 562
BstKTI	GATC	3 cut(s)	22, 47, 722
BstMAI	GTCTC	1 cut(s)	840
BstMBI	GATC	3 cut(s)	19, 44, 719
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	783
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	27
BtrI	CACGTC	2 cut(s)	441, 850
BtsIMutI	CAGTG	2 cut(s)	393, 534
BveI	ACCTGC	1 cut(s)	41
CaiI	CAGNNNCTG	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	528
CseI	GACGC	1 cut(s)	700
Csp6I	GTAC	4 cut(s)	12, 508, 571, 823
CviAII	CATG	3 cut(s)	226, 593, 780
CviQI	GTAC	4 cut(s)	12, 508, 571, 823
DdeI	CTNAG	2 cut(s)	273, 562
DpnI	GATC	3 cut(s)	21, 46, 721
DpnII	GATC	3 cut(s)	19, 44, 719
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	343, 869
EarI	CTCTTC	2 cut(s)	343, 869
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	528
Eco57I	CTGAAG	3 cut(s)	323, 440, 794
EcoRV	GATATC	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	840
FaeI	CATG	3 cut(s)	229, 596, 783
FatI	CATG	3 cut(s)	225, 592, 779
Fnu4HI	GCNGC	1 cut(s)	702
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	2 cut(s)	41, 578
GluI	GCNGC	1 cut(s)	702
HaeIII	GGCC	1 cut(s)	27
HgaI	GACGC	1 cut(s)	700
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	3 cut(s)	229, 596, 783
HincII	GTYRAC	2 cut(s)	33, 178
HindII	GTYRAC	2 cut(s)	33, 178
HinfI	GANTC	4 cut(s)	179, 236, 376, 541
HphI	GGTGA	2 cut(s)	350, 716
Hpy166II	GTNNAC	2 cut(s)	33, 178
Hpy188III	TCNNGA	1 cut(s)	775
Hpy8I	GTNNAC	2 cut(s)	33, 178
HpyAV	CCTTC	3 cut(s)	118, 127, 541
HpyCH4III	ACNGT	3 cut(s)	87, 397, 538
HpyCH4IV	ACGT	3 cut(s)	440, 828, 849
HpyCH4V	TGCA	5 cut(s)	73, 173, 602, 632, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	273, 562
HpySE526I	ACGT	3 cut(s)	440, 828, 849
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	3 cut(s)	229, 596, 783
Kzo9I	GATC	3 cut(s)	19, 44, 719
LmnI	GCTCC	4 cut(s)	127, 166, 745, 838
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	2 cut(s)	51, 654
MaeI	CTAG	2 cut(s)	41, 578
MaeII	ACGT	3 cut(s)	440, 828, 849
MaeIII	GTNAC	2 cut(s)	251, 296
MalI	GATC	3 cut(s)	21, 46, 721
MboI	GATC	3 cut(s)	19, 44, 719
MboII	GAAGA	8 cut(s)	127, 316, 360, 652, 655, 800, 868, 871
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	750
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	5 cut(s)	144, 267, 354, 608, 654
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	3 cut(s)	173, 230, 370
MnlI	CCTC	4 cut(s)	250, 399, 748, 870
Mox20I	TGGCCA	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	5 cut(s)	204, 243, 404, 546, 866
Msp20I	TGGCCA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	3 cut(s)	19, 44, 719
NlaIII	CATG	3 cut(s)	229, 596, 783
NlaIV	GGNNCC	3 cut(s)	46, 162, 615
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	1 cut(s)	783
PciI	ACATGT	1 cut(s)	779
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	703
PleI	GAGTC	3 cut(s)	173, 230, 370
PpsI	GAGTC	3 cut(s)	173, 230, 370
PscI	ACATGT	1 cut(s)	779
PspN4I	GGNNCC	3 cut(s)	46, 162, 615
PspPI	GGNCC	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	4 cut(s)	13, 509, 572, 824
RsaNI	GTAC	4 cut(s)	12, 508, 571, 823
SaqAI	TTAA	5 cut(s)	204, 243, 404, 546, 866
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	3 cut(s)	19, 44, 719
Sau96I	GGNCC	1 cut(s)	528
SchI	GAGTC	3 cut(s)	173, 230, 370
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	2 cut(s)	51, 654
SinI	GGWCC	1 cut(s)	528
Sse9I	AATT	5 cut(s)	144, 267, 354, 608, 654
SsiI	CCGC	3 cut(s)	48, 617, 843
SspI	AATATT	1 cut(s)	434
SspMI	CTAG	2 cut(s)	41, 578
TaaI	ACNGT	3 cut(s)	87, 397, 538
TaiI	ACGT	3 cut(s)	443, 831, 852
TaqI	TCGA	2 cut(s)	718, 753
TasI	AATT	5 cut(s)	144, 267, 354, 608, 654
TatI	WGTACW	2 cut(s)	11, 570
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	5 cut(s)	204, 243, 404, 546, 866
Tru9I	TTAA	5 cut(s)	204, 243, 404, 546, 866
TscAI	CASTG	2 cut(s)	400, 541
TseI	GCWGC	1 cut(s)	701
TspDTI	ATGAA	2 cut(s)	214, 351
TspRI	CASTG	2 cut(s)	400, 541
VpaK11BI	GGWCC	1 cut(s)	528
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	783
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	2 cut(s)	41, 578
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.