Rroxscaffold_1G00045240

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004499
Physical Location & Seq
Reverse (-)
64254756 .. 64257205
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045240.1

Sequence Viewer

Length: 876 bp
ATGGCAAACCCTGCACAGATTACTCTTATGGGCTCCACTTTCTGTGTGATGCTTACACTGCATTTCTCAGTACAGCTTCTCTCAGAGCACTTGTTCTGCTGGAAGAAGCCAAAGGAGCAGAAGGCCATACTGGTCATTATACTTATGGCCCCCTTGTATGCCATAGATTCCTATGTGGGCTTGATTGATTTCCAGGGAAGCAAAGCTTTCTTTATGTTCTTGGACTCGATCAAGGAGTGCTATGAAGCTCTGGTGATAGCCAAGTTCTTGGCTTTGCTGTATAGCTACTTAAACATATCGATAAGTAAAAACATAGTGCCTGATGGGATCAAAGGAAGGGAGATTCACCATTCGTTTCCAATGACTCTGTTTGTGCCTCGCTCTGTTCGTTTGAACCATCATACACTGAAGCTTCTCAAATACTGGACATGGCAATTTGTTGTTATTCGCCCTGTGTGCTCCATCTTGATGATTAGTCTTCAACTTATTGGAGTATATCCAAGTTGGGTTAGCTGGACATTCACTATAATTTTGAACATTTCAGTGTCACTGGCTCTGTATTCTCTTGTCATTTTCTACCATGTCTTTGATAAGGAGCTGGCACCACACAAACCTCTTGCTAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTGCTTTTGGCAGGGAATTGTTCTTGATATTCTCGTAGCATTAAAAATAATTCGATCTCATCATAAATGGCTAGACGTGGAGCATATTGAGGAAGCTCTGCAGAACATGTTAGTGTGTGTGGAGATGGTTTTCTTCTCGATTGTTCAGAAGTATGCGTACGGTGCTGAACCTTATAGAGATGATGCTATATCAACTGCAAAATGGGATAAGAAGACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

291

Amino Acids

33.65

Weight (kDa)

8.72

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 10 - 276 4.3e-76 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AclWI GGATC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 72, 812
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 3 cut(s) 394, 482, 535
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 8 cut(s) 76, 206, 248, 285, 412, 513, 598, 749
AluI AGCT 8 cut(s) 76, 206, 248, 285, 412, 513, 598, 749
Alw21I GWGCWC 2 cut(s) 90, 461
AlwI GGATC 1 cut(s) 335
AoxI GGCC 2 cut(s) 123, 147
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 265, 338
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
BbsI GAAGAC 3 cut(s) 470, 640, 872
Bbv12I GWGCWC 2 cut(s) 90, 461
BccI CCATC 4 cut(s) 317, 405, 470, 772
BciT130I CCWGG 1 cut(s) 194
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 1 cut(s) 752
Bme1390I CCNGG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 3 cut(s) 34, 150, 603
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 3 cut(s) 39, 642, 826
BpiI GAAGAC 3 cut(s) 470, 640, 872
Bsa29I ATCGAT 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 135, 428, 555
BseBI CCWGG 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 81, 96
BseNI ACTGG 3 cut(s) 135, 428, 555
BshFI GGCC 2 cut(s) 125, 149
BshNI GGYRCC 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 90, 461
BsiWI CGTACG 1 cut(s) 810
BsnI GGCC 2 cut(s) 125, 149
Bsp1286I GDGCHC 3 cut(s) 35, 90, 461
Bsp143I GATC 3 cut(s) 228, 327, 707
BspANI GGCC 2 cut(s) 125, 149
BspCNI CTCAG 2 cut(s) 80, 95
BspDI ATCGAT 1 cut(s) 299
BspLI GGNNCC 3 cut(s) 34, 150, 603
BspMAI CTGCAG 1 cut(s) 756
BspPI GGATC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 601
BsrI ACTGG 3 cut(s) 135, 428, 555
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 3 cut(s) 228, 327, 707
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 3 cut(s) 67, 82, 621
BstKTI GATC 3 cut(s) 231, 330, 710
BstMBI GATC 3 cut(s) 228, 327, 707
BstMWI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 752
BstV2I GAAGAC 3 cut(s) 470, 640, 872
BstXI CCANNNNNNTGG 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 2 cut(s) 125, 149
BsuTUI ATCGAT 1 cut(s) 299
BtrI CACGTC 1 cut(s) 730
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 4 cut(s) 56, 404, 548, 549
Cac8I GCNNGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 299
Csp6I GTAC 2 cut(s) 71, 811
CviAII CATG 3 cut(s) 429, 581, 760
CviQI GTAC 2 cut(s) 71, 811
DdeI CTNAG 3 cut(s) 67, 82, 621
DpnI GATC 3 cut(s) 230, 329, 709
DpnII GATC 3 cut(s) 228, 327, 707
Eco24I GRGCYC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 3 cut(s) 432, 584, 763
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 3 cut(s) 428, 580, 759
FriOI GRGCYC 1 cut(s) 35
FspBI CTAG 1 cut(s) 725
HaeIII GGCC 2 cut(s) 125, 149
Hin1II CATG 3 cut(s) 432, 584, 763
HindIII AAGCTT 2 cut(s) 204, 410
HinfI GANTC 4 cut(s) 167, 224, 343, 364
HphI GGTGA 2 cut(s) 265, 338
Hpy188I TCNGA 2 cut(s) 85, 801
Hpy188III TCNNGA 3 cut(s) 466, 677, 790
HpyAV CCTTC 2 cut(s) 115, 330
HpyCH4III ACNGT 1 cut(s) 815
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 5 cut(s) 14, 61, 633, 754, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
HpyF3I CTNAG 3 cut(s) 67, 82, 621
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 3 cut(s) 432, 584, 763
Kzo9I GATC 3 cut(s) 228, 327, 707
LmnI GCTCC 5 cut(s) 38, 115, 464, 595, 733
LweI GCATC 3 cut(s) 39, 642, 826
MaeI CTAG 1 cut(s) 725
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 546
MalI GATC 3 cut(s) 230, 329, 709
MboI GATC 3 cut(s) 228, 327, 707
MboII GAAGA 5 cut(s) 115, 470, 640, 643, 778
MhlI GDGCHC 3 cut(s) 35, 90, 461
MluCI AATT 4 cut(s) 434, 528, 669, 702
MlyI GAGTC 2 cut(s) 218, 358
MnlI CCTC 3 cut(s) 387, 624, 736
MseI TTAA 2 cut(s) 290, 695
MslI CAYNNNNRTG 3 cut(s) 467, 542, 764
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
NdeII GATC 3 cut(s) 228, 327, 707
NlaIII CATG 3 cut(s) 432, 584, 763
NlaIV GGNNCC 3 cut(s) 34, 150, 603
NmuCI GTSAC 1 cut(s) 546
NspI RCATGY 1 cut(s) 763
PciI ACATGT 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 2 cut(s) 167, 343
Pfl23II CGTACG 1 cut(s) 810
PleI GAGTC 2 cut(s) 218, 358
PpsI GAGTC 2 cut(s) 218, 358
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspLI CGTACG 1 cut(s) 810
PspN4I GGNNCC 3 cut(s) 34, 150, 603
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 756
RsaI GTAC 2 cut(s) 72, 812
RsaNI GTAC 2 cut(s) 71, 811
RseI CAYNNNNRTG 3 cut(s) 467, 542, 764
SaqAI TTAA 2 cut(s) 290, 695
Sau3AI GATC 3 cut(s) 228, 327, 707
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 218, 358
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 3 cut(s) 35, 90, 461
SfaNI GCATC 3 cut(s) 39, 642, 826
SfcI CTRYAG 1 cut(s) 752
SmiMI CAYNNNNRTG 3 cut(s) 467, 542, 764
Sse9I AATT 4 cut(s) 434, 528, 669, 702
SspMI CTAG 1 cut(s) 725
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 815
TaiI ACGT 1 cut(s) 732
TaqI TCGA 4 cut(s) 227, 299, 706, 791
TasI AATT 4 cut(s) 434, 528, 669, 702
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 2 cut(s) 167, 343
Tru1I TTAA 2 cut(s) 290, 695
Tru9I TTAA 2 cut(s) 290, 695
TscAI CASTG 4 cut(s) 63, 411, 549, 555
TseFI GTSAC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 4 cut(s) 63, 411, 549, 555
XceI RCATGY 1 cut(s) 763
XspI CTAG 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.