Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004499

Physical Location & Seq

Genomic Coordinates Forward (+)

27091293 .. 27092872

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATTTTAGAACAATGGATCGCGGTCAGTTGACCCTGCTAGGATCCGCAGGCTGTGTGATGCTTACGGTGCATTTCACATTACAGTTATTGTCGCAACATCTCTTTTACTGGAAGAACCCGAAGGAGCAGAAGGCGATAATAATTATCATTCTTATGGCTCCTTTATACGCTGCTGACTCGTTTGTGGGTTTATTGGATATTAAGGGAAGCAAAACGTTTTTCATGTTTTTGGACTCTATTAAGGAATGTTACGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTTATGTATAGTTACCTGAAGATATCCATAAGCAAAAATATTGTGCCAGATGAAATCAAAGGAAGAGAAATTCACCACTCGTTTCCCATGACTCTTTTTCAGCCTCGCACCGTTCGGCTAAACCACCAGACCCTGAAGCTACTCAAATATTGGACGTGGCAGTTTGTCATCATACGCCCAGTTTGTTCTGTTTTGATGATAACTCTACAAGCACTGGGGCTGTACCCCAGTTGGTTGAGCTGGACCTTCACTTTAATTCTTAACCTTTCGGTTTCTCTAGCATTGTACTCTCTAGTGGTGTTTTACCATGTGTTTGCAAAGGAATTGGCACCGCATTCACCCCTTGCAAAGTTCCTGTGCATCAAGGGAATTGTCTTCTTCGTCTTTTGGCAGGGAGTGGTCATTGACATATTAGCTGCTGTGGGCGTCATTCGATCTCACCATTTCTGGTTAGATGTGGAGCACGTCGAGGAAGCTATTCAGAATGTCTTGATATGTCTGGAGATGGTTGTGTTTTCTGTCCTCCAGCAGTATGCGTACCACGTTGCGCCTTACAGCGGAGACGTAGAAAAGAAGATGTTAAACAAGAAGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

295

Amino Acids

33.94

Weight (kDa)

8.96

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11200 AT4G21570
fragaria_vesca	FvH4_3g04241 FvH4_3g20851 FvH4_3g20851
malus_domestica	MD03G1219900.v1.1 MD05G1324000.v1.1 MD10G1301700.v1.1
prunus_persica	Prupe.4G038200_v2.0.a1 Prupe.4G038200_v2.0.a1 Prupe.4G188900_v2.0.a1
pyrus_communis	pycom03g16930 pycom05g29830 pycom10g25450
rosa_chinensis	RchiOBHm_Chr5g0006631 RchiOBHm_Chr5g0035181
rosa_laevigata	RLG00000031408 RLG00000033604
rosa_multiflora	Rmu_sc0001972.1_g000010
rosa_roxburghii	Rroxscaffold_1G00045240 Rroxscaffold_1G00069370
rosa_rugosa	Rorug04G0423400 Rorug05G0150400
rosa_samantha	Rh5AG243400 Rh5BG049900 Rh5BG242900 Rh5CG058300 Rh5CG274500 Rh5DG049400 Rh5DG251700
rosa_wichuraiana	Rw5G005060 Rw5G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	613
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	24, 48, 617, 843
AclI	AACGTT	1 cut(s)	218
AclWI	GGATC	3 cut(s)	27, 39, 52
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	2 cut(s)	323, 440
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	3 cut(s)	509, 572, 824
AfiI	CCNNNNNNNGG	1 cut(s)	842
AjiI	CACGTC	2 cut(s)	441, 751
AluBI	AGCT	4 cut(s)	424, 525, 701, 761
AluI	AGCT	4 cut(s)	424, 525, 701, 761
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	1 cut(s)	840
AlwI	GGATC	3 cut(s)	27, 39, 52
AlwNI	CAGNNNCTG	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	173, 701
ApoI	RAATTY	1 cut(s)	354
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	4 cut(s)	277, 350, 615, 716
AvaII	GGWCC	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	2 cut(s)	160, 688
BccI	CCATC	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	840
BfaI	CTAG	3 cut(s)	41, 563, 578
BisI	GCNGC	2 cut(s)	174, 702
BlsI	GCNGC	2 cut(s)	175, 703
Bme18I	GGWCC	1 cut(s)	528
BmgBI	CACGTC	2 cut(s)	441, 751
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	3 cut(s)	46, 162, 615
BmrI	ACTGGG	3 cut(s)	458, 507, 509
BmsI	GCATC	2 cut(s)	51, 654
BmuI	ACTGGG	3 cut(s)	458, 507, 509
BpiI	GAAGAC	1 cut(s)	652
BpmI	CTGGAG	2 cut(s)	794, 806
BsaHI	GRCGYC	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse1I	ACTGG	4 cut(s)	116, 464, 504, 513
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseNI	ACTGG	4 cut(s)	116, 464, 504, 513
BseXI	GCAGC	2 cut(s)	160, 688
Bsh1236I	CGCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	750
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmAI	GTCTC	1 cut(s)	840
BsmBI	CGTCTC	1 cut(s)	840
BsmI	GAATGC	1 cut(s)	619
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	3 cut(s)	19, 44, 719
BspACI	CCGC	4 cut(s)	24, 48, 617, 843
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	46, 162, 615
BspPI	GGATC	3 cut(s)	27, 39, 52
BspT107I	GGYRCC	1 cut(s)	613
BsrI	ACTGG	4 cut(s)	116, 464, 504, 513
BssMI	GATC	3 cut(s)	19, 44, 719
BssNI	GRCGYC	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	70, 87, 397
Bst6I	CTCTTC	2 cut(s)	343, 869
BstACI	GRCGYC	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	3 cut(s)	22, 47, 722
BstMAI	GTCTC	1 cut(s)	840
BstMBI	GATC	3 cut(s)	19, 44, 719
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	160, 688
BstV2I	GAAGAC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BtrI	CACGTC	2 cut(s)	441, 751
BtsIMutI	CAGTG	1 cut(s)	497
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	418
CfoI	GCGC	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	528
CseI	GACGC	1 cut(s)	700
Csp6I	GTAC	3 cut(s)	508, 571, 823
CviAII	CATG	3 cut(s)	226, 373, 593
CviQI	GTAC	3 cut(s)	508, 571, 823
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	3 cut(s)	21, 46, 721
DpnII	GATC	3 cut(s)	19, 44, 719
Eam1104I	CTCTTC	2 cut(s)	343, 869
EarI	CTCTTC	2 cut(s)	343, 869
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	528
Eco57I	CTGAAG	2 cut(s)	323, 440
EcoRV	GATATC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	840
FaeI	CATG	3 cut(s)	229, 376, 596
FatI	CATG	3 cut(s)	225, 372, 592
Fnu4HI	GCNGC	2 cut(s)	174, 702
Fsp4HI	GCNGC	2 cut(s)	174, 702
FspBI	CTAG	3 cut(s)	41, 563, 578
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	2 cut(s)	174, 702
GsuI	CTGGAG	2 cut(s)	794, 806
HgaI	GACGC	1 cut(s)	700
HhaI	GCGC	1 cut(s)	835
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	3 cut(s)	229, 376, 596
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	179, 236, 376
HphI	GGTGA	4 cut(s)	277, 350, 615, 716
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	768
Hpy188III	TCNNGA	2 cut(s)	775, 785
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	3 cut(s)	118, 127, 541
HpyCH4III	ACNGT	3 cut(s)	70, 87, 397
HpyCH4IV	ACGT	5 cut(s)	218, 440, 750, 828, 849
HpyCH4V	TGCA	4 cut(s)	73, 602, 632, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	5 cut(s)	218, 440, 750, 828, 849
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	3 cut(s)	229, 376, 596
HspAI	GCGC	1 cut(s)	833
Kzo9I	GATC	3 cut(s)	19, 44, 719
LmnI	GCTCC	3 cut(s)	127, 166, 745
Lsp1109I	GCAGC	2 cut(s)	160, 688
LweI	GCATC	2 cut(s)	51, 654
MaeI	CTAG	3 cut(s)	41, 563, 578
MaeII	ACGT	5 cut(s)	218, 440, 750, 828, 849
MaeIII	GTNAC	2 cut(s)	251, 296
MalI	GATC	3 cut(s)	21, 46, 721
MboI	GATC	3 cut(s)	19, 44, 719
MboII	GAAGA	6 cut(s)	127, 316, 360, 652, 655, 871
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	5 cut(s)	144, 354, 540, 608, 654
MlyI	GAGTC	3 cut(s)	173, 230, 370
MnlI	CCTC	5 cut(s)	250, 399, 748, 818, 870
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	5 cut(s)	204, 243, 539, 546, 866
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	619
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	3 cut(s)	19, 44, 719
NlaIII	CATG	3 cut(s)	229, 376, 596
NlaIV	GGNNCC	3 cut(s)	46, 162, 615
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	762
PkrI	GCNGC	2 cut(s)	175, 703
PleI	GAGTC	3 cut(s)	173, 230, 370
PpsI	GAGTC	3 cut(s)	173, 230, 370
Psp1406I	AACGTT	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	46, 162, 615
PspPI	GGNCC	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	3 cut(s)	509, 572, 824
RsaNI	GTAC	3 cut(s)	508, 571, 823
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	5 cut(s)	204, 243, 539, 546, 866
SatI	GCNGC	2 cut(s)	174, 702
Sau3AI	GATC	3 cut(s)	19, 44, 719
Sau96I	GGNCC	1 cut(s)	528
SchI	GAGTC	3 cut(s)	173, 230, 370
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	2 cut(s)	51, 654
SinI	GGWCC	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	5 cut(s)	144, 354, 540, 608, 654
SsiI	CCGC	4 cut(s)	24, 48, 617, 843
SspI	AATATT	2 cut(s)	325, 434
SspMI	CTAG	3 cut(s)	41, 563, 578
TaaI	ACNGT	3 cut(s)	70, 87, 397
TaiI	ACGT	5 cut(s)	221, 443, 753, 831, 852
TaqI	TCGA	2 cut(s)	718, 753
TasI	AATT	5 cut(s)	144, 354, 540, 608, 654
TatI	WGTACW	1 cut(s)	570
Tru1I	TTAA	5 cut(s)	204, 243, 539, 546, 866
Tru9I	TTAA	5 cut(s)	204, 243, 539, 546, 866
TscAI	CASTG	1 cut(s)	504
TseI	GCWGC	2 cut(s)	173, 701
TspDTI	ATGAA	2 cut(s)	214, 351
TspRI	CASTG	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	528
XapI	RAATTY	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	3 cut(s)	41, 563, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.