Rorug04G0423400

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004499
Physical Location & Seq
Forward (+)
58265977 .. 58267552
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0423400.1

Sequence Viewer

Length: 705 bp
ATGGCAAACTCAGTTCCCATGAATGGAAATAATTGCACAAAATCGATAACAGGTTCAATGCCAATGAACGGTGGAAACGGCACTCACAGCTACTCCAAGAACTCCTACTACCAGAAAAAAGCTGCAGAGATTGAAAAGGAAAAGATCATGGAGGTGATTGCTGAGAAGCTTGATATGAAAAACCTCTCCTCAATGTCAAACACTATTCGTATTGCAGACTTGGGATGTTCAACTGGGCCAAACACTTTCGTGACAATGCAAAACCTACTAGAAGCCATGCAACAAAAGTACCGATCCCAATCTGCTCCTGATGATCATCAAACAATGCCTGAATTTCAAGTGTTCTTCAACGACCTAGTGTTGAATGACTTCAATACCCTGTTTACCTCTCTTCCCAAAGACAAGCAATACTTTGCAGCAGGGGTACCGGGGTCTTTTCACGACCGTCTGTTTCCGGAGTCCTCTATCCACCTTGTGCACGCCTCACTTTCCCTCCACTGGCTCTCTAAGTTGCCAGAAGAGTTGCAAGACAAGGCCTCTCCAGCATGGAACAAAGGGAGGATTCACTACACAAGTGCCCCTAATGAAGTGGCTGATGCTTACATGTCCCAGTTTGCCAAGGAAATGGAGAACTTTCTGGATGCGAGGGCTAAAGAGCTTGTGCCTGGAGGAATGATGGTGATGGTCTTGTCTGGAAATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

234

Amino Acids

26.11

Weight (kDa)

6.05

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 61 - 233 3.9e-72 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 424
AccIII TCCGGA 1 cut(s) 454
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 332
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 2 cut(s) 290, 426
AfiI CCNNNNNNNGG 3 cut(s) 23, 68, 498
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 7 cut(s) 57, 134, 231, 338, 349, 364, 373
AjnI CCWGG 1 cut(s) 664
AleI CACNNNNGTG 1 cut(s) 248
AluBI AGCT 4 cut(s) 90, 122, 169, 658
AluI AGCT 4 cut(s) 90, 122, 169, 658
Alw21I GWGCWC 1 cut(s) 480
Alw44I GTGCAC 1 cut(s) 476
AlwI GGATC 1 cut(s) 288
Aor13HI TCCGGA 1 cut(s) 454
AoxI GGCC 2 cut(s) 236, 534
ApaLI GTGCAC 1 cut(s) 476
ApeKI GCWGC 2 cut(s) 122, 416
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 368
Asp718I GGTACC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 166, 691
BaeGI GKGCMC 2 cut(s) 480, 580
BaeI ACNNNNGTAYC 4 cut(s) 272, 305, 416, 449
BanI GGYRCC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 109, 428
BccI CCATC 2 cut(s) 670, 676
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 429
BfaI CTAG 2 cut(s) 269, 356
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 123, 417
BlsI GCNGC 2 cut(s) 124, 418
Bme1390I CCNGG 2 cut(s) 429, 666
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 2 cut(s) 429, 666
BmrI ACTGGG 2 cut(s) 243, 604
BmsI GCATC 2 cut(s) 586, 631
BmuI ACTGGG 2 cut(s) 243, 604
BpmI CTGGAG 2 cut(s) 525, 687
BpuMI CCSGG 1 cut(s) 429
Bsa29I ATCGAT 1 cut(s) 44
BsaBI GATNNNNATC 2 cut(s) 298, 315
BsaJI CCNNGG 2 cut(s) 428, 618
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 477, 507
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 68, 498
Bse1I ACTGG 3 cut(s) 238, 503, 610
Bse8I GATNNNNATC 2 cut(s) 298, 315
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 1 cut(s) 666
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 428, 618
BseGI GGATG 2 cut(s) 230, 646
BseJI GATNNNNATC 2 cut(s) 298, 315
BseLI CCNNNNNNNGG 3 cut(s) 23, 68, 498
BseMII CTCAG 2 cut(s) 24, 153
BseNI ACTGG 3 cut(s) 238, 503, 610
BseRI GAGGAG 1 cut(s) 178
BseSI GKGCMC 2 cut(s) 480, 580
BseXI GCAGC 2 cut(s) 109, 428
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 238, 536
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 2 cut(s) 428, 455
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 3 cut(s) 23, 68, 498
BsmFI GGGAC 1 cut(s) 592
BsnI GGCC 2 cut(s) 238, 536
Bsp1286I GDGCHC 2 cut(s) 480, 580
Bsp13I TCCGGA 1 cut(s) 454
Bsp143I GATC 3 cut(s) 144, 293, 313
BspANI GGCC 2 cut(s) 238, 536
BspCNI CTCAG 2 cut(s) 23, 154
BspDI ATCGAT 1 cut(s) 44
BspEI TCCGGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 426
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 424
BsrI ACTGG 3 cut(s) 238, 503, 610
BssECI CCNNGG 2 cut(s) 428, 618
BssMI GATC 3 cut(s) 144, 293, 313
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 71, 446
Bst6I CTCTTC 2 cut(s) 396, 513
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 10, 162, 507
BstF5I GGATG 2 cut(s) 230, 646
BstKTI GATC 3 cut(s) 147, 296, 316
BstMBI GATC 3 cut(s) 144, 293, 313
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 2 cut(s) 87, 542
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 427, 664
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 2 cut(s) 480, 580
BstV1I GCAGC 2 cut(s) 109, 428
BstXI CCANNNNNNTGG 1 cut(s) 625
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 2 cut(s) 238, 536
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 2 cut(s) 230, 646
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 236
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 2 cut(s) 289, 425
CviAII CATG 5 cut(s) 19, 148, 277, 546, 604
CviQI GTAC 2 cut(s) 289, 425
DdeI CTNAG 3 cut(s) 10, 162, 507
DpnI GATC 3 cut(s) 146, 295, 315
DpnII GATC 3 cut(s) 144, 293, 313
DraIII CACNNNGTG 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 396, 513
EarI CTCTTC 2 cut(s) 396, 513
Eco130I CCWWGG 1 cut(s) 618
Eco147I AGGCCT 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 5 cut(s) 22, 151, 280, 549, 607
FaiI YATR 6 cut(s) 20, 149, 176, 278, 547, 605
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 592
FatI CATG 5 cut(s) 18, 147, 276, 545, 603
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 123, 417
FokI GGATG 2 cut(s) 237, 653
Fsp4HI GCNGC 2 cut(s) 123, 417
FspBI CTAG 2 cut(s) 269, 356
GluI GCNGC 2 cut(s) 123, 417
GsuI CTGGAG 2 cut(s) 525, 687
HaeIII GGCC 2 cut(s) 238, 536
HapII CCGG 2 cut(s) 428, 455
Hin1II CATG 5 cut(s) 22, 151, 280, 549, 607
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 458, 562
HpaII CCGG 2 cut(s) 428, 455
HphI GGTGA 2 cut(s) 166, 691
Hpy166II GTNNAC 2 cut(s) 384, 478
Hpy188III TCNNGA 6 cut(s) 250, 308, 440, 455, 638, 693
Hpy8I GTNNAC 2 cut(s) 384, 478
HpyCH4III ACNGT 2 cut(s) 71, 446
HpyCH4V TGCA 8 cut(s) 36, 125, 215, 259, 280, 416, 478, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 542
HpyF3I CTNAG 3 cut(s) 10, 162, 507
Hsp92II CATG 5 cut(s) 22, 151, 280, 549, 607
Kpn2I TCCGGA 1 cut(s) 454
KpnI GGTACC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 144, 293, 313
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 109, 428
LweI GCATC 2 cut(s) 586, 631
MaeI CTAG 2 cut(s) 269, 356
MaeIII GTNAC 1 cut(s) 250
MalI GATC 3 cut(s) 146, 295, 315
MboI GATC 3 cut(s) 144, 293, 313
MboII GAAGA 3 cut(s) 337, 383, 530
MhlI GDGCHC 2 cut(s) 480, 580
MluCI AATT 2 cut(s) 31, 332
MlyI GAGTC 1 cut(s) 467
MroI TCCGGA 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 1 cut(s) 703
MslI CAYNNNNRTG 2 cut(s) 152, 248
MspI CCGG 2 cut(s) 428, 455
MspR9I CCNGG 2 cut(s) 429, 666
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 2 cut(s) 87, 542
NciI CCSGG 1 cut(s) 429
NdeII GATC 3 cut(s) 144, 293, 313
NlaIII CATG 5 cut(s) 22, 151, 280, 549, 607
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 607
OliI CACNNNNGTG 1 cut(s) 248
PceI AGGCCT 1 cut(s) 536
PciI ACATGT 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 2 cut(s) 124, 418
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PscI ACATGT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 236
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 2 cut(s) 290, 426
RsaNI GTAC 2 cut(s) 289, 425
RseI CAYNNNNRTG 2 cut(s) 152, 248
SaqAI TTAA 1 cut(s) 703
SatI GCNGC 2 cut(s) 123, 417
Sau3AI GATC 3 cut(s) 144, 293, 313
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 429, 666
SduI GDGCHC 2 cut(s) 480, 580
SfaNI GCATC 2 cut(s) 586, 631
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 152, 248
Sse9I AATT 2 cut(s) 31, 332
SseBI AGGCCT 1 cut(s) 536
SspMI CTAG 2 cut(s) 269, 356
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 427, 664
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 71, 446
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 31, 332
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 1 cut(s) 703
Tru9I TTAA 1 cut(s) 703
TscAI CASTG 1 cut(s) 503
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 122, 416
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 4 cut(s) 35, 80, 191, 600
TspRI CASTG 1 cut(s) 503
VneI GTGCAC 1 cut(s) 476
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 2 cut(s) 269, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.