Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004499

Physical Location & Seq

Genomic Coordinates Reverse (-)

18100586 .. 18102588

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCAAATCCTGCACAACTTGTTCTTCTGGGTTCCACTTTCTGTATGATGGTCACAACGCATTTCTCACTACAGCTTCTCTCAGAGCATTTTTTCTGCTGGAATAAACCAAAGGAGCAAAAGGCCATCATAATCATCATACTTATGGCCCCCTTATATGCCATTGATTCCTTTGTGGGCTTGTTGGATTACCAGGGAAGCAAAGTTTCGTTCACGGTCTTGGATTCGATCAAGGAATGCTACGAGGCTTTGGTAATAGCCAAGTTTTTGGCTTTGCTGTACAGCTACTTGAACATATCCATAAGTAAAAACATCGTGCCAGATGAAATCAAAGGACGGGAGATTCACCATTCGTTTCCAATGACTCTTTTTATGCCTCGCACTGTTCGTCTGAACCATCATACTTTGAAGCTTCTCAAGTACTGGACATGGCAATTTGTTGTGATTCGCCCTGTGTGCTCCATCTTGATGATAACTCTTCAACTTCTTGGTGTATATCCCAGCTGGGTTAGCTGGACATTCACTATAATTCTGAACATTTCAGTGTCACTGGCTTTGTATTCTCTTGTTGCCTTCTACCATGTGTTTGCTAAAGAGCTGGCACCACACAAACCGCTCACTAAGTTCTTGTGCATCAAAGGGATCGTCTTCTTCTGCTTTTGGCAGGGGATTGTCCTTGATATTCTTGCAGCGCTGAAAATAATCCGATCTCATCATATCTGGCTGGACGTGGAGCATATTGAGGAAGCTCTTCAAAACATACTAGTGTGCGTGGAGATGGTTTTCTTTTCAGTTGTTCAGAAGTATGCATACAGTGCCGAGCCATACAGAGATGCTGAAATATCGACTAAGGCATATGATAGGAAGAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

292

Amino Acids

33.64

Weight (kDa)

8.57

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11200 AT4G21570
fragaria_vesca	FvH4_3g04241 FvH4_3g20851 FvH4_3g20851
malus_domestica	MD03G1219900.v1.1 MD05G1324000.v1.1 MD10G1301700.v1.1
prunus_persica	Prupe.4G038200_v2.0.a1 Prupe.4G038200_v2.0.a1 Prupe.4G188900_v2.0.a1
pyrus_communis	pycom03g16930 pycom05g29830 pycom10g25450
rosa_chinensis	RchiOBHm_Chr5g0006631 RchiOBHm_Chr5g0035181
rosa_laevigata	RLG00000031408 RLG00000033604
rosa_multiflora	Rmu_sc0001972.1_g000010
rosa_roxburghii	Rroxscaffold_1G00045240 Rroxscaffold_1G00069370
rosa_rugosa	Rorug04G0423400 Rorug05G0150400
rosa_samantha	Rh5AG243400 Rh5BG049900 Rh5BG242900 Rh5CG058300 Rh5CG274500 Rh5DG049400 Rh5DG251700
rosa_wichuraiana	Rw5G005060 Rw5G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	601
AccBSI	CCGCTC	1 cut(s)	616
AciI	CCGC	1 cut(s)	614
AclWI	GGATC	1 cut(s)	650
AfaI	GTAC	2 cut(s)	281, 422
AfeI	AGCGCT	1 cut(s)	693
AgsI	TTSAA	4 cut(s)	292, 409, 482, 755
AhlI	ACTAGT	1 cut(s)	763
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	7 cut(s)	76, 285, 412, 504, 513, 598, 749
AluI	AGCT	7 cut(s)	76, 285, 412, 504, 513, 598, 749
Alw21I	GWGCWC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	650
Aor51HI	AGCGCT	1 cut(s)	693
AoxI	GGCC	2 cut(s)	123, 147
ApeKI	GCWGC	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	630, 662
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	601
BarI	GAAGNNNNNNTAC	2 cut(s)	794, 826
BbsI	GAAGAC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	701
BccI	CCATC	5 cut(s)	43, 134, 405, 470, 772
BciT130I	CCWGG	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	695
BisI	GCNGC	1 cut(s)	690
BlsI	GCNGC	1 cut(s)	691
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	34, 150, 603
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	642, 823
BpiI	GAAGAC	1 cut(s)	640
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	428, 555
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	428, 555
BseXI	GCAGC	1 cut(s)	701
BseYI	CCCAGC	2 cut(s)	500, 504
BshFI	GGCC	2 cut(s)	125, 149
BshNI	GGYRCC	1 cut(s)	601
BsiHKAI	GWGCWC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	125, 149
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	228, 642, 707
BspACI	CCGC	1 cut(s)	614
BspANI	GGCC	2 cut(s)	125, 149
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	34, 150, 603
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	756
BspT107I	GGYRCC	1 cut(s)	601
BsrBI	CCGCTC	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	428, 555
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	228, 642, 707
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	217, 385, 815
Bst6I	CTCTTC	2 cut(s)	483, 756
BstAPI	GCANNNNNTGC	2 cut(s)	11, 815
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	82, 621, 849
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	3 cut(s)	231, 645, 710
BstMBI	GATC	3 cut(s)	228, 642, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 456, 510, 815
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	701
BstV2I	GAAGAC	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	125, 149
BtrI	CACGTC	1 cut(s)	730
BtsIMutI	CAGTG	4 cut(s)	381, 548, 549, 820
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	280, 421
CviAII	CATG	2 cut(s)	429, 581
CviQI	GTAC	2 cut(s)	280, 421
DdeI	CTNAG	3 cut(s)	82, 621, 849
DpnI	GATC	3 cut(s)	230, 644, 709
DpnII	GATC	3 cut(s)	228, 642, 707
Eam1104I	CTCTTC	2 cut(s)	483, 756
EarI	CTCTTC	2 cut(s)	483, 756
Eco47III	AGCGCT	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	811
FaeI	CATG	2 cut(s)	432, 584
FatI	CATG	2 cut(s)	428, 580
FauNDI	CATATG	1 cut(s)	856
Fnu4HI	GCNGC	1 cut(s)	690
Fsp4HI	GCNGC	1 cut(s)	690
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	1 cut(s)	690
GsaI	CCCAGC	2 cut(s)	504, 508
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	2 cut(s)	125, 149
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	2 cut(s)	432, 584
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	5 cut(s)	167, 224, 343, 364, 445
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	5 cut(s)	85, 393, 534, 707, 801
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	3 cut(s)	217, 385, 815
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	4 cut(s)	14, 633, 689, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 456, 510, 815
HpyF3I	CTNAG	3 cut(s)	82, 621, 849
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	2 cut(s)	432, 584
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	3 cut(s)	228, 642, 707
LguI	GCTCTTC	1 cut(s)	756
LmnI	GCTCC	3 cut(s)	115, 464, 733
Lsp1109I	GCAGC	1 cut(s)	701
LweI	GCATC	2 cut(s)	642, 823
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	2 cut(s)	52, 546
MalI	GATC	3 cut(s)	230, 644, 709
MbiI	CCGCTC	1 cut(s)	616
MboI	GATC	3 cut(s)	228, 642, 707
MboII	GAAGA	5 cut(s)	17, 470, 640, 643, 743
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	2 cut(s)	434, 528
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	238, 387, 736
Mph1103I	ATGCAT	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	750
MslI	CAYNNNNRTG	4 cut(s)	143, 467, 542, 764
MspA1I	CMGCKG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	11, 456, 510, 815
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	3 cut(s)	228, 642, 707
NlaIII	CATG	2 cut(s)	432, 584
NlaIV	GGNNCC	3 cut(s)	34, 150, 603
NmeAIII	GCCGAG	1 cut(s)	844
NmuCI	GTSAC	2 cut(s)	52, 546
NsiI	ATGCAT	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	4 cut(s)	167, 224, 343, 445
PkrI	GCNGC	1 cut(s)	691
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	2 cut(s)	500, 504
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	34, 150, 603
PspPI	GGNCC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	504
RsaI	GTAC	2 cut(s)	281, 422
RsaNI	GTAC	2 cut(s)	280, 421
RseI	CAYNNNNRTG	4 cut(s)	143, 467, 542, 764
SapI	GCTCTTC	1 cut(s)	756
SatI	GCNGC	1 cut(s)	690
Sau3AI	GATC	3 cut(s)	228, 642, 707
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	8 cut(s)	78, 287, 414, 506, 515, 600, 732, 751
SfaNI	GCATC	2 cut(s)	642, 823
SfcI	CTRYAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	4 cut(s)	143, 467, 542, 764
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SpeI	ACTAGT	1 cut(s)	763
Sse9I	AATT	2 cut(s)	434, 528
SsiI	CCGC	1 cut(s)	614
SspMI	CTAG	1 cut(s)	764
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	217, 385, 815
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	227, 845
TasI	AATT	2 cut(s)	434, 528
TatI	WGTACW	2 cut(s)	279, 420
TfiI	GAWTC	4 cut(s)	167, 224, 343, 445
TscAI	CASTG	4 cut(s)	388, 549, 555, 820
TseFI	GTSAC	2 cut(s)	52, 546
TseI	GCWGC	1 cut(s)	689
Tsp45I	GTSAC	2 cut(s)	52, 546
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	4 cut(s)	388, 549, 555, 820
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	1 cut(s)	764
ZrmI	AGTACT	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.