FvH4_3g20851

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004499
Physical Location & Seq
Forward (+)
13916526 .. 13919410
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20851.t1

Sequence Viewer

Length: 876 bp
ATGGCAAACCCTGCACAGATTATTCTTCTAGGCTCCACTTTCTGTGCGATGCTTACTCTCCATTTTTCAATACAGCTTCTCTCTGAACACTTGTTGTACTGGAAGAAGCCAAAGGAGCAGAAGGCCATATTGGTCATTATACTTATGGCTCCCTTGTATGCCATAGATTCCTATGTGGGCTTGATTGATTTCCAGGGAAGCAAGGCTTTCTTCATGTTCTTGGACTCGGTCAAGGAGTGCTATGAGGCTTTTGTGATTGCTAAGTTCTTGGCTTTGCTGTATAGCTACTTGAACATATCTATAAGTAAAAACATAGTGCCTGATGAGATCAAAGGAAGGGAGATTCACCATTCGTTTCCAATGACTCTGTTTGTGCCTCATTCTGTTCGTTTGAATCATAATACACTGAAGCTTCTCAAGTACTGGACATGGCAATTTGTTGTTATTCGCCCTGTGTGCTCCATCTTGATGATCACTCTCCAACTTGTTGGAGTATATCCTAGTTGGGTGAGCTGGACATTCACAATAATTTTGAACATTTCAGTGTCACTGGCTCTGTATTCTCTTGCCATTTTTTACCATGTGTTTGACAAAGAGCTGGCACCACACAAACCTCTTGCTAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTGCTTTTGGCAGGGAATTGTTCTTGATATTCTCGTAGCATTAAAAGTAATTCGATCTCATCATAAATGGCTAGACGTGGAGCATATTGAGGAAGCTCTGCAGAACATGTTGGTCTGTGTGGAGATGGTTTTCTTTTCAGTTTATCAGAAGCATGCCTACGGTGCTGAACCTTATAGAGATGATGCTATATCAACTGCAAAACGAGATAAGAAGACGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

292

Amino Acids

33.66

Weight (kDa)

8.61

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 10 - 276 1.2e-76 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 98, 422
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 4 cut(s) 69, 292, 394, 535
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 1 cut(s) 192
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 6 cut(s) 76, 285, 412, 513, 598, 749
AluI AGCT 6 cut(s) 76, 285, 412, 513, 598, 749
Alw21I GWGCWC 1 cut(s) 461
AoxI GGCC 1 cut(s) 123
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AsuHPI GGTGA 2 cut(s) 338, 520
BanI GGYRCC 1 cut(s) 601
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
BbsI GAAGAC 2 cut(s) 640, 872
Bbv12I GWGCWC 1 cut(s) 461
BccI CCATC 2 cut(s) 470, 772
BciT130I CCWGG 1 cut(s) 194
BclI TGATCA 1 cut(s) 471
BfaI CTAG 3 cut(s) 29, 501, 725
BfmI CTRYAG 1 cut(s) 752
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 730
BmiI GGNNCC 3 cut(s) 34, 150, 603
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 3 cut(s) 39, 642, 826
BpiI GAAGAC 2 cut(s) 640, 872
BpuEI CTTGAG 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 104, 428, 555
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 193
BseNI ACTGG 3 cut(s) 104, 428, 555
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 461
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 3 cut(s) 327, 471, 707
BspANI GGCC 1 cut(s) 125
BspLI GGNNCC 3 cut(s) 34, 150, 603
BspMAI CTGCAG 1 cut(s) 756
BspT107I GGYRCC 1 cut(s) 601
BsrI ACTGG 3 cut(s) 104, 428, 555
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 3 cut(s) 327, 471, 707
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 600, 807
BstDEI CTNAG 2 cut(s) 261, 621
BstKTI GATC 3 cut(s) 330, 474, 710
BstMBI GATC 3 cut(s) 327, 471, 707
BstMWI GCNNNNNNNGC 4 cut(s) 11, 115, 456, 815
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 763, 809
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 752
BstV2I GAAGAC 2 cut(s) 640, 872
BstXI CCANNNNNNTGG 1 cut(s) 488
BsuRI GGCC 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 730
BtsIMutI CAGTG 3 cut(s) 404, 548, 549
Cac8I GCNNGC 2 cut(s) 600, 807
Csp6I GTAC 2 cut(s) 97, 421
CviAII CATG 5 cut(s) 214, 429, 581, 760, 806
CviQI GTAC 2 cut(s) 97, 421
DdeI CTNAG 2 cut(s) 261, 621
DpnI GATC 3 cut(s) 329, 473, 709
DpnII GATC 3 cut(s) 327, 471, 707
Eco57I CTGAAG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 5 cut(s) 217, 432, 584, 763, 809
FalI AAGNNNNNCTT 4 cut(s) 190, 222, 194, 226
FatI CATG 5 cut(s) 213, 428, 580, 759, 805
FbaI TGATCA 1 cut(s) 471
FspBI CTAG 3 cut(s) 29, 501, 725
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 5 cut(s) 217, 432, 584, 763, 809
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 5 cut(s) 167, 224, 343, 364, 394
HphI GGTGA 2 cut(s) 338, 520
Hpy188I TCNGA 2 cut(s) 85, 801
Hpy188III TCNNGA 2 cut(s) 466, 677
HpyAV CCTTC 2 cut(s) 115, 330
HpyCH4III ACNGT 1 cut(s) 815
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 4 cut(s) 14, 633, 754, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 115, 456, 815
HpyF3I CTNAG 2 cut(s) 261, 621
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 5 cut(s) 217, 432, 584, 763, 809
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 3 cut(s) 327, 471, 707
LmnI GCTCC 5 cut(s) 38, 115, 154, 464, 733
LweI GCATC 3 cut(s) 39, 642, 826
MaeI CTAG 3 cut(s) 29, 501, 725
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 546
MalI GATC 3 cut(s) 329, 473, 709
MboI GATC 3 cut(s) 327, 471, 707
MboII GAAGA 5 cut(s) 17, 115, 202, 640, 643
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 4 cut(s) 434, 528, 669, 702
MlyI GAGTC 2 cut(s) 218, 358
MmeI TCCRAC 2 cut(s) 469, 505
MnlI CCTC 4 cut(s) 238, 387, 624, 736
MseI TTAA 1 cut(s) 695
MslI CAYNNNNRTG 2 cut(s) 467, 542
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 4 cut(s) 11, 115, 456, 815
NdeII GATC 3 cut(s) 327, 471, 707
NlaIII CATG 5 cut(s) 217, 432, 584, 763, 809
NlaIV GGNNCC 3 cut(s) 34, 150, 603
NmuCI GTSAC 1 cut(s) 546
NspI RCATGY 2 cut(s) 763, 809
PaeI GCATGC 1 cut(s) 809
PciI ACATGT 1 cut(s) 759
PfeI GAWTC 3 cut(s) 167, 343, 394
PflFI GACNNNGTC 1 cut(s) 227
PleI GAGTC 2 cut(s) 218, 358
PpsI GAGTC 2 cut(s) 218, 358
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 34, 150, 603
PstI CTGCAG 1 cut(s) 756
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 2 cut(s) 98, 422
RsaNI GTAC 2 cut(s) 97, 421
RseI CAYNNNNRTG 2 cut(s) 467, 542
SaqAI TTAA 1 cut(s) 695
Sau3AI GATC 3 cut(s) 327, 471, 707
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 2 cut(s) 218, 358
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 461
SetI ASST 9 cut(s) 78, 287, 414, 515, 600, 616, 732, 751, 826
SfaNI GCATC 3 cut(s) 39, 642, 826
SfcI CTRYAG 1 cut(s) 752
SmiMI CAYNNNNRTG 2 cut(s) 467, 542
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SphI GCATGC 1 cut(s) 809
Sse9I AATT 4 cut(s) 434, 528, 669, 702
SspMI CTAG 3 cut(s) 29, 501, 725
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 815
TaiI ACGT 1 cut(s) 732
TaqI TCGA 1 cut(s) 706
TaqII GACCGA 1 cut(s) 217
TasI AATT 4 cut(s) 434, 528, 669, 702
TatI WGTACW 2 cut(s) 96, 420
TfiI GAWTC 3 cut(s) 167, 343, 394
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 3 cut(s) 411, 549, 555
TseFI GTSAC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 1 cut(s) 202
TspRI CASTG 3 cut(s) 411, 549, 555
Tth111I GACNNNGTC 1 cut(s) 227
XceI RCATGY 2 cut(s) 763, 809
XspI CTAG 3 cut(s) 29, 501, 725
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.