Rroxscaffold_1G00069370

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004499
Physical Location & Seq
Forward (+)
90359117 .. 90363870
4754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069370.1

Sequence Viewer

Length: 888 bp
ATGGATTTGAGTACAATGGATCGCGGGCAGTTGACCCTGCTAGGATCGGCTGGTTGTGTGATGCTTACAATGCATTTCACAGTCCAGTTATTGTCGCAACATCTCTTTTACTGGAAGAACCCAAAGGAACAGAAAGCTATAATAATTATCATTCTTATGGCTCCACTATATGCAATTGACTCATTTGTGGGTTTATTGGATATTCAAGGAAGCAAAGCAGTTTTCATGCTCTTAGACTCTATTAAAGAGTGTTACGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTAATGTATAGTTACCTGAACATATCTATAAGCAAAAATATTGTGCCAGACGAAATCAAAGGAAGAGAAATCCACCACTCTTTTCCAATGACTCTTTTTCAGCCTCACACTGTTCGGCTAAACCACCAAACCCTGAAGCTACTCAAATATTGGACTTGGCAGTTCGTCGTCATCCGCCCAGTTTTTTCTGTTTTGATGATAACACTACAAGTACTTGGAGTTTATCCCAGTTGGTTGAGCTGGACCTTCACTATCATTCTTAATGTTTCCATTTCATTGGCATTGTACTCTCTGGTCGTGTTTTACCATGTGTTTGCAAAGGAACTAGAACCACATAAACCCCTTGCAAAGTTCATGTGCATCAAGGGAATTGTCTTCTTCTGCTTTTGGCAGGGAGTGGTCCTTGAGATATTAGCTGCTATCGGCATCATTCAATCTCATCATTTCTGGTTGGATGTGGAGCACATTGAAGAAGCTATGCAGAATGTCTTGGTATGTCTTGAGATGGTCGTCTTCTCTGTTCTCCAGCAGTATGCCTACCATGTTGCACCTTACAGTGGAGACGTAGAAACGAAGATGAGATTAAACAAGAAGACGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

295

Amino Acids

34.03

Weight (kDa)

7.19

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 16 - 280 6.1e-75 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 24, 460
AclWI GGATC 2 cut(s) 27, 52
AcuI CTGAAG 1 cut(s) 440
AfaI GTAC 3 cut(s) 13, 498, 572
AfiI CCNNNNNNNGG 1 cut(s) 842
AgsI TTSAA 3 cut(s) 206, 719, 755
AluBI AGCT 5 cut(s) 137, 424, 525, 701, 761
AluI AGCT 5 cut(s) 137, 424, 525, 701, 761
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 2 cut(s) 27, 52
ApeKI GCWGC 1 cut(s) 701
AspS9I GGNCC 2 cut(s) 528, 685
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 2 cut(s) 528, 685
BbsI GAAGAC 3 cut(s) 652, 790, 884
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 688
BccI CCATC 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 2 cut(s) 41, 611
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
BmcAI AGTACT 1 cut(s) 498
Bme18I GGWCC 2 cut(s) 528, 685
BmgT120I GGNCC 2 cut(s) 528, 685
BmiI GGNNCC 1 cut(s) 162
BmrI ACTGGG 2 cut(s) 458, 507
BmsI GCATC 3 cut(s) 51, 654, 720
BmuI ACTGGG 2 cut(s) 458, 507
BpiI GAAGAC 3 cut(s) 652, 790, 884
BpmI CTGGAG 1 cut(s) 794
BpuEI CTTGAG 2 cut(s) 710, 806
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 4 cut(s) 85, 116, 464, 513
BseGI GGATG 2 cut(s) 456, 745
BseLI CCNNNNNNNGG 1 cut(s) 842
BseNI ACTGG 4 cut(s) 85, 116, 464, 513
BseXI GCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 840
BsmBI CGTCTC 1 cut(s) 840
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 2 cut(s) 19, 44
BspACI CCGC 2 cut(s) 24, 460
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 2 cut(s) 27, 52
BsrI ACTGG 4 cut(s) 85, 116, 464, 513
BssMI GATC 2 cut(s) 19, 44
Bst4CI ACNGT 3 cut(s) 82, 397, 842
Bst6I CTCTTC 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 232, 273
BstF5I GGATG 2 cut(s) 456, 745
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 2 cut(s) 22, 47
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 2 cut(s) 19, 44
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 3 cut(s) 652, 790, 884
BstXI CCANNNNNNTGG 1 cut(s) 562
BtsCI GGATG 2 cut(s) 456, 745
BtsIMutI CAGTG 2 cut(s) 393, 847
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 528, 685
Csp6I GTAC 3 cut(s) 12, 497, 571
CviAII CATG 4 cut(s) 226, 593, 640, 827
CviQI GTAC 3 cut(s) 12, 497, 571
DdeI CTNAG 2 cut(s) 232, 273
DpnI GATC 2 cut(s) 21, 46
DpnII GATC 2 cut(s) 19, 44
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
EciI GGCGGA 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 528, 685
Eco57I CTGAAG 1 cut(s) 440
EcoT22I ATGCAT 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 4 cut(s) 229, 596, 643, 830
FatI CATG 4 cut(s) 225, 592, 639, 826
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 2 cut(s) 443, 752
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 2 cut(s) 41, 611
GluI GCNGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 794
Hin1II CATG 4 cut(s) 229, 596, 643, 830
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 179, 236, 376
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 785
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 3 cut(s) 82, 397, 842
HpyCH4IV ACGT 1 cut(s) 849
HpyCH4V TGCA 7 cut(s) 73, 173, 602, 632, 645, 766, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 232, 273
HpySE526I ACGT 1 cut(s) 849
Hsp92II CATG 4 cut(s) 229, 596, 643, 830
Kzo9I GATC 2 cut(s) 19, 44
LmnI GCTCC 2 cut(s) 166, 745
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 3 cut(s) 51, 654, 720
MaeI CTAG 2 cut(s) 41, 611
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 2 cut(s) 251, 296
MalI GATC 2 cut(s) 21, 46
MboI GATC 2 cut(s) 19, 44
MboII GAAGA 7 cut(s) 127, 360, 652, 655, 767, 790, 871
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 3 cut(s) 144, 174, 654
MlyI GAGTC 3 cut(s) 173, 230, 370
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 2 cut(s) 250, 399
Mph1103I ATGCAT 1 cut(s) 75
MseI TTAA 3 cut(s) 243, 546, 869
MslI CAYNNNNRTG 1 cut(s) 155
MunI CAATTG 1 cut(s) 174
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 2 cut(s) 19, 44
NlaIII CATG 4 cut(s) 229, 596, 643, 830
NlaIV GGNNCC 1 cut(s) 162
NsiI ATGCAT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 3 cut(s) 173, 230, 370
PpsI GAGTC 3 cut(s) 173, 230, 370
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 528, 685
RsaI GTAC 3 cut(s) 13, 498, 572
RsaNI GTAC 3 cut(s) 12, 497, 571
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 243, 546, 869
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 2 cut(s) 19, 44
Sau96I GGNCC 2 cut(s) 528, 685
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 3 cut(s) 173, 230, 370
SduI GDGCHC 1 cut(s) 750
SetI ASST 9 cut(s) 139, 303, 426, 527, 533, 703, 763, 838, 852
SfaNI GCATC 3 cut(s) 51, 654, 720
SinI GGWCC 2 cut(s) 528, 685
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 689, 785
SmoI CTYRAG 2 cut(s) 689, 785
Sse9I AATT 3 cut(s) 144, 174, 654
SsiI CCGC 2 cut(s) 24, 460
SspI AATATT 2 cut(s) 325, 434
SspMI CTAG 2 cut(s) 41, 611
TaaI ACNGT 3 cut(s) 82, 397, 842
TaiI ACGT 1 cut(s) 852
TasI AATT 3 cut(s) 144, 174, 654
TatI WGTACW 3 cut(s) 11, 496, 570
Tru1I TTAA 3 cut(s) 243, 546, 869
Tru9I TTAA 3 cut(s) 243, 546, 869
TscAI CASTG 2 cut(s) 400, 847
TseI GCWGC 1 cut(s) 701
TspDTI ATGAA 3 cut(s) 214, 549, 628
TspRI CASTG 2 cut(s) 400, 847
VpaK11BI GGWCC 2 cut(s) 528, 685
XspI CTAG 2 cut(s) 41, 611
ZrmI AGTACT 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.