AT1G11200

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004499
Physical Location & Seq
Forward (+)
3753213 .. 3755658
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11200.1

Sequence Viewer

Length: 888 bp
ATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCCGTGTTCTGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTTGTATCCCAGCATCTGTTTTACTGGAAGAAACCTAATGAACAGAGAGCCATTCTTATTATTGTGCTTATGGCTCCTGTTTACGCTATCAACTCTTTTGTGGGCTTGTTAGATGCTAAAGGAAGCAAACCTTTCTTCATGTTTCTAGACGCCGTTAAGGAATGCTATGAGGCACTTGTCATTGCTAAATTCTTGGCTTTGATGTATAGTTATGTAAACATATCGATGAGTGCACGGATTATCCCAGATGAATTCAAAGGGCGAGAAATCCACCATTCGTTTCCAATGACTCTTTTCGTGCCCCGTACCACACATCTGGATTACCTCACACTGAAACAGCTCAAGCAATGGACATGGCAGTTTTGTATTATCCGCCCAGTGTGTTCCATCTTGATGATAACATTACAGATCCTTGGGATTTATCCAGTTTGGTTGAGCTGGATCTTCACTGCTATTCTCAATGTTTCGGTTTCCCTGGCGTTGTATTCTTTGGTGAAATTCTACCATGTTTTTGCTAAAGAGTTGGAGCCTCATAAGCCTCTTACAAAGTTCATGTGCGTCAAAGGGATAGTGTTCTTCTGCTTTTGGCAGGGAATAGTCCTGAAGATATTGGTGGGATTGGGATTAATTAAGTCGCATCATTTCTGGTTGGAGGTGGATCAGCTTGAAGAAGCTCTGCAAAATGTGCTTGTATGTCTTGAGATGATCGTCTTCTCCATCATTCAACAGTACGCTTTTCACGTTGCTCCTTACAGTGGAGAAACTGAAGCTAAGATGAGATTCAACAAGAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

295

Amino Acids

34.17

Weight (kDa)

8.59

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 16 - 281 7.2e-74 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 463
AclWI GGATC 5 cut(s) 42, 55, 493, 539, 756
AcsI RAATTY 3 cut(s) 278, 341, 587
AcuI CTGAAG 2 cut(s) 713, 876
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 397, 821
AfiI CCNNNNNNNGG 1 cut(s) 845
AgsI TTSAA 4 cut(s) 346, 758, 815, 874
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 6 cut(s) 91, 430, 528, 754, 764, 860
AluI AGCT 6 cut(s) 91, 430, 528, 754, 764, 860
Alw21I GWGCWC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 5 cut(s) 42, 55, 493, 539, 756
AlwNI CAGNNNCTG 1 cut(s) 106
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 3 cut(s) 278, 341, 587
AseI ATTAAT 1 cut(s) 716
AsuHPI GGTGA 2 cut(s) 52, 595
BaeGI GKGCMC 2 cut(s) 325, 393
BamHI GGATCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 793
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 37, 485, 815
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 566
BciVI GTATCC 1 cut(s) 106
BfaI CTAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 566
BmiI GGNNCC 3 cut(s) 49, 165, 618
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 4 cut(s) 63, 112, 193, 736
BmuI ACTGGG 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 793
BpuEI CTTGAG 2 cut(s) 416, 809
Bsa29I ATCGAT 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 502, 564
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 845
Bse1I ACTGG 3 cut(s) 119, 467, 515
Bse3DI GCAATG 2 cut(s) 270, 443
BseBI CCWGG 1 cut(s) 566
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 502, 564
BseLI CCNNNNNNNGG 1 cut(s) 845
BseMI GCAATG 2 cut(s) 270, 443
BseNI ACTGG 3 cut(s) 119, 467, 515
BseSI GKGCMC 2 cut(s) 325, 393
BseXI GCAGC 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 845
BsmI GAATGC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 325, 393
Bsp143I GATC 6 cut(s) 33, 47, 498, 531, 748, 795
BspACI CCGC 2 cut(s) 29, 463
BspDI ATCGAT 1 cut(s) 314
BspLI GGNNCC 3 cut(s) 49, 165, 618
BspPI GGATC 5 cut(s) 42, 55, 493, 539, 756
BsrDI GCAATG 2 cut(s) 270, 443
BsrI ACTGG 3 cut(s) 119, 467, 515
BssECI CCNNGG 2 cut(s) 502, 564
BssMI GATC 6 cut(s) 33, 47, 498, 531, 748, 795
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 40, 819, 845
BstACI GRCGYC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 775
BstDEI CTNAG 1 cut(s) 861
BstKTI GATC 6 cut(s) 36, 50, 501, 534, 751, 798
BstMBI GATC 6 cut(s) 33, 47, 498, 531, 748, 795
BstMWI GCNNNNNNNGC 3 cut(s) 73, 625, 775
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstSLI GKGCMC 2 cut(s) 325, 393
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 3 cut(s) 47, 498, 531
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 3 cut(s) 47, 498, 531
Bsu15I ATCGAT 1 cut(s) 314
BsuI GTATCC 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 314
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 4 cut(s) 419, 474, 537, 850
CaiI CAGNNNCTG 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 314
CseI GACGC 2 cut(s) 248, 637
Csp6I GTAC 2 cut(s) 396, 820
CviAII CATG 4 cut(s) 229, 444, 596, 643
CviQI GTAC 2 cut(s) 396, 820
DdeI CTNAG 1 cut(s) 861
DpnI GATC 6 cut(s) 35, 49, 500, 533, 750, 797
DpnII GATC 6 cut(s) 33, 47, 498, 531, 748, 795
EciI GGCGGA 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 713, 876
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 4 cut(s) 232, 447, 599, 646
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FatI CATG 4 cut(s) 228, 443, 595, 642
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 236
GluI GCNGC 1 cut(s) 89
GsaI CCCAGC 1 cut(s) 103
HgaI GACGC 2 cut(s) 248, 637
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 4 cut(s) 232, 447, 599, 646
HinfI GANTC 2 cut(s) 379, 870
HphI GGTGA 2 cut(s) 52, 595
Hpy166II GTNNAC 3 cut(s) 172, 307, 323
Hpy188III TCNNGA 6 cut(s) 70, 236, 407, 481, 691, 788
Hpy8I GTNNAC 3 cut(s) 172, 307, 323
HpyCH4III ACNGT 3 cut(s) 40, 819, 845
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 4 cut(s) 76, 88, 323, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 625, 775
HpyF3I CTNAG 1 cut(s) 861
HpySE526I ACGT 1 cut(s) 831
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 4 cut(s) 232, 447, 599, 646
Kzo9I GATC 6 cut(s) 33, 47, 498, 531, 748, 795
LmnI GCTCC 3 cut(s) 169, 616, 841
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 4 cut(s) 63, 112, 193, 736
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 831
MalI GATC 6 cut(s) 35, 49, 500, 533, 750, 797
MboI GATC 6 cut(s) 33, 47, 498, 531, 748, 795
MboII GAAGA 7 cut(s) 130, 217, 526, 658, 706, 770, 793
MflI RGATCY 3 cut(s) 47, 498, 531
MhlI GDGCHC 2 cut(s) 325, 393
MluCI AATT 4 cut(s) 278, 341, 587, 717
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 2 cut(s) 594, 720
MnlI CCTC 5 cut(s) 253, 425, 630, 639, 736
MseI TTAA 3 cut(s) 246, 716, 720
MslI CAYNNNNRTG 3 cut(s) 41, 314, 482
MspR9I CCNGG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 73, 625, 775
NdeII GATC 6 cut(s) 33, 47, 498, 531, 748, 795
NlaIII CATG 4 cut(s) 232, 447, 599, 646
NlaIV GGNNCC 3 cut(s) 49, 165, 618
PacI TTAATTAA 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 870
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PshBI ATTAAT 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 3 cut(s) 49, 165, 618
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 3 cut(s) 47, 498, 531
RsaI GTAC 2 cut(s) 397, 821
RsaNI GTAC 2 cut(s) 396, 820
RseI CAYNNNNRTG 3 cut(s) 41, 314, 482
SaqAI TTAA 3 cut(s) 246, 716, 720
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 6 cut(s) 33, 47, 498, 531, 748, 795
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 2 cut(s) 325, 393
SfaNI GCATC 4 cut(s) 63, 112, 193, 736
SmiMI CAYNNNNRTG 3 cut(s) 41, 314, 482
SmlI CTYRAG 2 cut(s) 431, 788
SmoI CTYRAG 2 cut(s) 431, 788
Sse9I AATT 4 cut(s) 278, 341, 587, 717
SsiI CCGC 2 cut(s) 29, 463
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 3 cut(s) 40, 819, 845
TaiI ACGT 1 cut(s) 834
TaqI TCGA 2 cut(s) 71, 314
TasI AATT 4 cut(s) 278, 341, 587, 717
TfiI GAWTC 1 cut(s) 870
Tru1I TTAA 3 cut(s) 246, 716, 720
Tru9I TTAA 3 cut(s) 246, 716, 720
TscAI CASTG 4 cut(s) 426, 474, 544, 850
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 144, 217, 354, 631
TspGWI ACGGA 2 cut(s) 40, 340
TspRI CASTG 4 cut(s) 426, 474, 544, 850
VneI GTGCAC 1 cut(s) 321
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 3 cut(s) 278, 341, 587
XbaI TCTAGA 1 cut(s) 235
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.