Prupe.4G038200_v2.0.a1

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0004499
Physical Location & Seq
Reverse (-)
1793907 .. 1796624
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G038200.1

Sequence Viewer

Length: 888 bp
ATGGATTTAAGTACAATGGATCGGGGCCAATTGACGCTGCTAGGATCTGCAGCTTGTGTGATGCTTACAATGCATTTCTCAGTCCAGTTACTGTCACAACATCTCTTTTACTGGAAGAACCCAAAGGAGCAGAAGGCTATAATAATTATTATTCTTATGGCTCCAATATATGCAGTTGACTCATTTGTGGGCTTATTGGATATTCAGGGAAGCAAAACTTTTTTCATGTTTTTGGACTCTATTAAGGAGTGTTATGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTAATGTATAGTTACCTGAAGATATCCATAAGCAAGAATATAGTGCCAGATGAAATCAAAGGAAGAGAAATTCACCACTCGTTTCCTATGACTCTTTTTCAGCCTCACACCGTTCGGCTAAACCACCATACCCTGAAGCTACTCAAATATTGGACTTGGCAATTTGTCATCATACGCCCAGTTTGTTCTGTCTTGATGATAACACTCCAAGCACTTGGACTCTACCCCAGTTGGTTGAGCTGGACATTCACTATCATTCTAAATGTTTCAGTTTCATTAGCGTTATACTCTCTAGTGGTGTTTTACCATGTGTTTGCAAAGGAATTGGCACCACATTCCCCCCTTGCAAAGTTCCTGTGCATCAAGGGAATAGTCTTCTTCTGCTTTTGGCAGGGAGTGGTGATTGACGTATTAGCTGCTGTAGGCGTCATTCGATCTCATCATTTCTGGTTAGATGTGGAGCACATTGAGGAAGCTATTCAGAATGTCTTGATATGTCTGGAGATGGTGGTGTTTTCTGTTCTCCAGCAATATGCATACCATGTTGCACCTTACAGCGGAGACGTAGAATCAAAGATGAAATTAAACAAGAAGAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

296

Amino Acids

33.95

Weight (kDa)

8.44

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 1 cut(s) 843
AclWI GGATC 2 cut(s) 27, 52
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 2 cut(s) 323, 440
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 842
AluBI AGCT 5 cut(s) 53, 424, 525, 701, 761
AluI AGCT 5 cut(s) 53, 424, 525, 701, 761
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 2 cut(s) 27, 52
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 3 cut(s) 37, 50, 701
ApoI RAATTY 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 762
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 3 cut(s) 277, 350, 697
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 3 cut(s) 24, 62, 688
BccI CCATC 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 2 cut(s) 41, 578
BfmI CTRYAG 2 cut(s) 48, 705
BisI GCNGC 3 cut(s) 38, 51, 702
BlsI GCNGC 3 cut(s) 39, 52, 703
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 3 cut(s) 26, 162, 615
BmrI ACTGGG 2 cut(s) 458, 507
BmsI GCATC 2 cut(s) 51, 654
BmuI ACTGGG 2 cut(s) 458, 507
BpiI GAAGAC 1 cut(s) 652
BpmI CTGGAG 2 cut(s) 794, 806
BsaHI GRCGYC 1 cut(s) 711
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 4 cut(s) 85, 116, 464, 513
BseLI CCNNNNNNNGG 1 cut(s) 842
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 4 cut(s) 85, 116, 464, 513
BseXI GCAGC 3 cut(s) 24, 62, 688
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 840
BsmBI CGTCTC 1 cut(s) 840
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 3 cut(s) 19, 44, 719
BspACI CCGC 1 cut(s) 843
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 26, 162, 615
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 2 cut(s) 27, 52
BspT107I GGYRCC 1 cut(s) 613
BsrI ACTGG 4 cut(s) 85, 116, 464, 513
BssMI GATC 3 cut(s) 19, 44, 719
BssNI GRCGYC 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 93, 397
Bst6I CTCTTC 2 cut(s) 343, 872
BstACI GRCGYC 1 cut(s) 711
BstDEI CTNAG 2 cut(s) 79, 273
BstKTI GATC 3 cut(s) 22, 47, 722
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 3 cut(s) 19, 44, 719
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstSFI CTRYAG 2 cut(s) 48, 705
BstV1I GCAGC 3 cut(s) 24, 62, 688
BstV2I GAAGAC 1 cut(s) 652
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 2 cut(s) 43, 700
Csp6I GTAC 1 cut(s) 12
CviAII CATG 3 cut(s) 226, 593, 827
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 79, 273
DpnI GATC 3 cut(s) 21, 46, 721
DpnII GATC 3 cut(s) 19, 44, 719
Eam1104I CTCTTC 2 cut(s) 343, 872
EarI CTCTTC 2 cut(s) 343, 872
Eco32I GATATC 1 cut(s) 309
Eco57I CTGAAG 2 cut(s) 323, 440
EcoRV GATATC 1 cut(s) 309
EcoT22I ATGCAT 2 cut(s) 75, 823
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 3 cut(s) 229, 596, 830
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FatI CATG 3 cut(s) 225, 592, 826
Fnu4HI GCNGC 3 cut(s) 38, 51, 702
Fsp4HI GCNGC 3 cut(s) 38, 51, 702
FspBI CTAG 2 cut(s) 41, 578
GluI GCNGC 3 cut(s) 38, 51, 702
GsuI CTGGAG 2 cut(s) 794, 806
HaeIII GGCC 1 cut(s) 27
HgaI GACGC 2 cut(s) 43, 700
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 3 cut(s) 229, 596, 830
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 5 cut(s) 179, 236, 376, 504, 854
HphI GGTGA 3 cut(s) 277, 350, 697
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 768
Hpy188III TCNNGA 3 cut(s) 478, 775, 785
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 93, 397
HpyCH4IV ACGT 2 cut(s) 693, 849
HpyCH4V TGCA 8 cut(s) 50, 73, 173, 602, 632, 645, 821, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 79, 273
HpySE526I ACGT 2 cut(s) 693, 849
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 3 cut(s) 229, 596, 830
Kzo9I GATC 3 cut(s) 19, 44, 719
LmnI GCTCC 3 cut(s) 127, 166, 745
Lsp1109I GCAGC 3 cut(s) 24, 62, 688
LweI GCATC 2 cut(s) 51, 654
MaeI CTAG 2 cut(s) 41, 578
MaeII ACGT 2 cut(s) 693, 849
MaeIII GTNAC 3 cut(s) 87, 93, 296
MalI GATC 3 cut(s) 21, 46, 721
MboI GATC 3 cut(s) 19, 44, 719
MboII GAAGA 5 cut(s) 127, 316, 360, 652, 655
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 6 cut(s) 29, 144, 354, 446, 608, 866
MlyI GAGTC 4 cut(s) 173, 230, 370, 498
MnlI CCTC 4 cut(s) 250, 399, 748, 873
Mph1103I ATGCAT 2 cut(s) 75, 823
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 3 cut(s) 8, 243, 869
MspA1I CMGCKG 1 cut(s) 843
MunI CAATTG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 3 cut(s) 19, 44, 719
NlaIII CATG 3 cut(s) 229, 596, 830
NlaIV GGNNCC 3 cut(s) 26, 162, 615
NmuCI GTSAC 1 cut(s) 93
NsiI ATGCAT 2 cut(s) 75, 823
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 1 cut(s) 854
PkrI GCNGC 3 cut(s) 39, 52, 703
PleI GAGTC 4 cut(s) 173, 230, 370, 498
PpsI GAGTC 4 cut(s) 173, 230, 370, 498
PspN4I GGNNCC 3 cut(s) 26, 162, 615
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 8, 243, 869
SatI GCNGC 3 cut(s) 38, 51, 702
Sau3AI GATC 3 cut(s) 19, 44, 719
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 4 cut(s) 173, 230, 370, 498
SduI GDGCHC 1 cut(s) 750
SetI ASST 9 cut(s) 55, 303, 426, 527, 696, 703, 763, 838, 852
SfaNI GCATC 2 cut(s) 51, 654
SfcI CTRYAG 2 cut(s) 48, 705
Sse9I AATT 6 cut(s) 29, 144, 354, 446, 608, 866
SsiI CCGC 1 cut(s) 843
SspI AATATT 1 cut(s) 434
SspMI CTAG 2 cut(s) 41, 578
TaaI ACNGT 2 cut(s) 93, 397
TaiI ACGT 2 cut(s) 696, 852
TaqI TCGA 1 cut(s) 718
TasI AATT 6 cut(s) 29, 144, 354, 446, 608, 866
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 854
Tru1I TTAA 3 cut(s) 8, 243, 869
Tru9I TTAA 3 cut(s) 8, 243, 869
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 3 cut(s) 37, 50, 701
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 4 cut(s) 214, 351, 549, 878
XapI RAATTY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 2 cut(s) 41, 578
Zsp2I ATGCAT 2 cut(s) 75, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.