Rh5AG243400

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004499
Physical Location & Seq
Forward (+)
29677262 .. 29679466
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG243400.1

Sequence Viewer

Length: 876 bp
ATGGCAAACCCTGCACAGATTACTCTTATGGGCTCCACTTTCTGTGTGATGCTTACGCTGCATTTCTCAGTACAGCTTCTCTCAGAGCACTTGTTCTGCTGGAAGAAGCCAAAGGAGCAAAAGGCCATACTCGTCATTATACTTATGGCTCCCTTGTATGCCATAGATTCCTATGTGGGCTTGATTGATTTCCAGGGAAGCAAAGCTTTCTTTATGTTCCTGGACTCGGTCAAGGAGTGCTATGAAGCTTTGGTGATAGCCAAGTTCTTGGCTTTGCTGTATAGCTACTTGAACATATCGATAAGTAAAAACATAGTGCCTGATGAGATCAAAGGAAGGGAGATTCACCATTCGTTTCCAATGACTCTGTTTGTGCCTCGCTCTGTTCGTTTGAACCATCATACACTGAAGCTTCTCAAATACTGGACATGGCAATTTGTTGTTATTCGCCCTGTGTGCTCCATCTTGATGATTAGTCTTCAACTTATTGGAGTATATCCCAGTTGGGTTAGCTGGACATTCACTATAATTTTGAACATTTCAGTGTCACTGGCTCTGTATTCTCTTGTCATTTTCTACCATGTCTTTGATAAGGAGCTGGCACCACACAAACCTCTTGCTAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTGCTTTTGGCAGGGAATTGTTCTTGATATTCTCGTAGCATTAAAAATAATTCGATCTCATCATAAATGGCTAGACGTGGAGCATATTGAGGAAGCTCTGCAGAACATGTTAGTGTGTGTGGAGATGGTTTTCTTCTCGATTGTTCAGAAGTATGCCTACGGTGCTGAACCTTATAGAGATGATGCTATATCAACTGCAAAACGGGATAAGAAGACGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

291

Amino Acids

33.68

Weight (kDa)

8.72

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 10 - 276 3.1e-76 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 4 cut(s) 292, 394, 482, 535
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 2 cut(s) 192, 219
AluBI AGCT 8 cut(s) 76, 206, 248, 285, 412, 513, 598, 749
AluI AGCT 8 cut(s) 76, 206, 248, 285, 412, 513, 598, 749
Alw21I GWGCWC 2 cut(s) 90, 461
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 58
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AsuHPI GGTGA 2 cut(s) 265, 338
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
BbsI GAAGAC 3 cut(s) 470, 640, 872
Bbv12I GWGCWC 2 cut(s) 90, 461
BbvI GCAGC 1 cut(s) 45
BccI CCATC 3 cut(s) 405, 470, 772
BciT130I CCWGG 2 cut(s) 194, 221
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 1 cut(s) 752
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 194, 221
BmgBI CACGTC 1 cut(s) 730
BmiI GGNNCC 3 cut(s) 34, 150, 603
BmrFI CCNGG 2 cut(s) 194, 221
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 39, 642, 826
BmuI ACTGGG 1 cut(s) 495
BpiI GAAGAC 3 cut(s) 470, 640, 872
Bsa29I ATCGAT 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 428, 501, 555
BseBI CCWGG 2 cut(s) 194, 221
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 81, 96
BseNI ACTGG 3 cut(s) 428, 501, 555
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 90, 461
BslI CCNNNNNNNGG 1 cut(s) 226
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 3 cut(s) 35, 90, 461
Bsp143I GATC 2 cut(s) 327, 707
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 80, 95
BspDI ATCGAT 1 cut(s) 299
BspLI GGNNCC 3 cut(s) 34, 150, 603
BspMAI CTGCAG 1 cut(s) 756
BspT107I GGYRCC 1 cut(s) 601
BsrI ACTGG 3 cut(s) 428, 501, 555
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 327, 707
Bst2UI CCWGG 2 cut(s) 194, 221
Bst4CI ACNGT 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 3 cut(s) 67, 82, 621
BstKTI GATC 2 cut(s) 330, 710
BstMBI GATC 2 cut(s) 327, 707
BstMWI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
BstNI CCWGG 2 cut(s) 194, 221
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 2 cut(s) 192, 219
BstSFI CTRYAG 1 cut(s) 752
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 3 cut(s) 470, 640, 872
BstXI CCANNNNNNTGG 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 299
BtrI CACGTC 1 cut(s) 730
BtsIMutI CAGTG 3 cut(s) 404, 548, 549
Cac8I GCNNGC 1 cut(s) 600
ClaI ATCGAT 1 cut(s) 299
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 429, 581, 760
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 3 cut(s) 67, 82, 621
DpnI GATC 2 cut(s) 329, 709
DpnII GATC 2 cut(s) 327, 707
Eco24I GRGCYC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 192, 219
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 3 cut(s) 432, 584, 763
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 3 cut(s) 428, 580, 759
Fnu4HI GCNGC 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 725
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 3 cut(s) 432, 584, 763
HindIII AAGCTT 3 cut(s) 204, 246, 410
HinfI GANTC 4 cut(s) 167, 224, 343, 364
HphI GGTGA 2 cut(s) 265, 338
Hpy188I TCNGA 2 cut(s) 85, 801
Hpy188III TCNNGA 3 cut(s) 466, 677, 790
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 815
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 5 cut(s) 14, 61, 633, 754, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
HpyF3I CTNAG 3 cut(s) 67, 82, 621
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 3 cut(s) 432, 584, 763
Kzo9I GATC 2 cut(s) 327, 707
LmnI GCTCC 6 cut(s) 38, 115, 154, 464, 595, 733
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 3 cut(s) 39, 642, 826
MaeI CTAG 1 cut(s) 725
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 546
MalI GATC 2 cut(s) 329, 709
MboI GATC 2 cut(s) 327, 707
MboII GAAGA 5 cut(s) 115, 470, 640, 643, 778
MhlI GDGCHC 3 cut(s) 35, 90, 461
MluCI AATT 4 cut(s) 434, 528, 669, 702
MlyI GAGTC 2 cut(s) 218, 358
MnlI CCTC 3 cut(s) 387, 624, 736
MseI TTAA 1 cut(s) 695
MslI CAYNNNNRTG 3 cut(s) 467, 542, 764
MspR9I CCNGG 2 cut(s) 194, 221
MvaI CCWGG 2 cut(s) 194, 221
MwoI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
NdeII GATC 2 cut(s) 327, 707
NlaIII CATG 3 cut(s) 432, 584, 763
NlaIV GGNNCC 3 cut(s) 34, 150, 603
NmuCI GTSAC 1 cut(s) 546
NspI RCATGY 1 cut(s) 763
PciI ACATGT 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 2 cut(s) 167, 343
PflFI GACNNNGTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 2 cut(s) 218, 358
PpsI GAGTC 2 cut(s) 218, 358
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 192, 219
PspGI CCWGG 2 cut(s) 192, 219
PspN4I GGNNCC 3 cut(s) 34, 150, 603
PstI CTGCAG 1 cut(s) 756
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 3 cut(s) 467, 542, 764
SaqAI TTAA 1 cut(s) 695
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 327, 707
SchI GAGTC 2 cut(s) 218, 358
ScrFI CCNGG 2 cut(s) 194, 221
SduI GDGCHC 3 cut(s) 35, 90, 461
SfaNI GCATC 3 cut(s) 39, 642, 826
SfcI CTRYAG 1 cut(s) 752
SmiMI CAYNNNNRTG 3 cut(s) 467, 542, 764
Sse9I AATT 4 cut(s) 434, 528, 669, 702
SspMI CTAG 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 192, 219
TaaI ACNGT 1 cut(s) 815
TaiI ACGT 1 cut(s) 732
TaqI TCGA 3 cut(s) 299, 706, 791
TaqII GACCGA 1 cut(s) 217
TasI AATT 4 cut(s) 434, 528, 669, 702
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 2 cut(s) 167, 343
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 3 cut(s) 411, 549, 555
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 3 cut(s) 411, 549, 555
Tth111I GACNNNGTC 1 cut(s) 227
XceI RCATGY 1 cut(s) 763
XspI CTAG 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.