Prupe.4G188900_v2.0.a1

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0004499
Physical Location & Seq
Forward (+)
11238694 .. 11241828
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G188900.1

Sequence Viewer

Length: 876 bp
ATGGGAAATCCGGCACAAATTACTCTTCTGGCTTCCACTTTCTGCGTGATGGTTACAATGCATTTCTCAGTACAGCTTCTCTCAGAACATTTTTTCTACTGGAAGAAGCCAAAGGAGCAACAAGCCATCATAATTATTATACTTATGGCCCCCTTATATGCTCTAGATTCTTTTGTGGGCTTGTTCGATTTTCAGGGAAGCAATGTTTTCTTTACGTTTTTGGACTCGATCAAGGAGTGCTATGAGGCTTTGGTGATAGCTAAGTTTTTGGGTTTGCTGTACAGCTACTTGAACATATCTATAAGTAAAAACATAGTGCCAGATGAAATCAAAGGACGGGAGATTCACCATTCATTTCCCATGACTCTTTTTCTGCCTCGCACTGTTCGTTTGAACCATCATACATTGAAGCTTCTCAAGTACTGGACATGGCAATTTGTTGTGATTCGCCCCGTGTGCTCCATCTTGATGATAACTCTTCAACTCCTTGGAGTATATCCCAGCTGGGTTAGCTGGACATTCACAATAATTCTGAATATTTCAGTGACACTGGCTCTGTATTCTCTTATTGTTTTCTATCATGTGTTTGCTAAAGAGCTGGCACCACACAAACCTCTTGCTAAGTTCTTATGTATCAAAGGGATTGTCTTCTTCTGCTTTTGGCAGGGAGTTGTTCTTGACATACTTGCAGCATTGAAAATAATTCGATCTCATCATATCTGGCTAGACGTGGAGCATATTGAGGAAGCTCTTCAAAACATATTGGTGTGTGTGGAGATGGTTTTATTTTCAGTTTTTCAGAAGTATGCGTACAGTGTTGAACCGTATAGAGACGATGGTATACCAAGTAAGACAAGGGAAAATAAGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

292

Amino Acids

33.81

Weight (kDa)

8.43

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 841
AfaI GTAC 4 cut(s) 72, 281, 422, 812
AgsI TTSAA 7 cut(s) 292, 394, 409, 482, 697, 755, 821
AjiI CACGTC 1 cut(s) 730
AluBI AGCT 8 cut(s) 76, 260, 285, 412, 504, 513, 598, 749
AluI AGCT 8 cut(s) 76, 260, 285, 412, 504, 513, 598, 749
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 1 cut(s) 825
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 689
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
Asp700I GAANNNNTTC 1 cut(s) 750
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 265, 338
BanI GGYRCC 1 cut(s) 601
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 701
BccI CCATC 6 cut(s) 43, 134, 405, 470, 772, 830
BcoDI GTCTC 1 cut(s) 825
BfaI CTAG 2 cut(s) 164, 725
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
BmcAI AGTACT 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 150, 603
BpiI GAAGAC 1 cut(s) 640
BpuEI CTTGAG 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 487
Bse1I ACTGG 3 cut(s) 104, 428, 555
Bse3DI GCAATG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 487
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 81, 96
BseNI ACTGG 3 cut(s) 104, 428, 555
BseXI GCAGC 1 cut(s) 701
BseYI CCCAGC 2 cut(s) 500, 504
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 825
BsmBI CGTCTC 1 cut(s) 825
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 461
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 228, 707
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 2 cut(s) 80, 95
BspLI GGNNCC 2 cut(s) 150, 603
BspQI GCTCTTC 1 cut(s) 756
BspT107I GGYRCC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 3 cut(s) 104, 428, 555
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 2 cut(s) 228, 707
BssNAI GTATAC 1 cut(s) 842
BssT1I CCWWGG 1 cut(s) 487
Bst1107I GTATAC 1 cut(s) 842
Bst4CI ACNGT 3 cut(s) 385, 815, 825
Bst6I CTCTTC 3 cut(s) 30, 483, 756
BstAUI TGTACA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 4 cut(s) 67, 82, 261, 621
BstKTI GATC 2 cut(s) 231, 710
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 2 cut(s) 228, 707
BstMWI GCNNNNNNNGC 3 cut(s) 115, 456, 510
BstV1I GCAGC 1 cut(s) 701
BstV2I GAAGAC 1 cut(s) 640
BstZ17I GTATAC 1 cut(s) 842
BsuRI GGCC 1 cut(s) 149
BtrI CACGTC 1 cut(s) 730
BtsIMutI CAGTG 4 cut(s) 381, 548, 549, 820
Cac8I GCNNGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 4 cut(s) 71, 280, 421, 811
CviAII CATG 3 cut(s) 361, 429, 581
CviQI GTAC 4 cut(s) 71, 280, 421, 811
DdeI CTNAG 4 cut(s) 67, 82, 261, 621
DpnI GATC 2 cut(s) 230, 709
DpnII GATC 2 cut(s) 228, 707
Eam1104I CTCTTC 3 cut(s) 30, 483, 756
EarI CTCTTC 3 cut(s) 30, 483, 756
Eco130I CCWWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 825
FaeI CATG 3 cut(s) 364, 432, 584
FatI CATG 3 cut(s) 360, 428, 580
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 1 cut(s) 690
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 2 cut(s) 164, 725
GluI GCNGC 1 cut(s) 690
GsaI CCCAGC 2 cut(s) 504, 508
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 11
Hin1II CATG 3 cut(s) 364, 432, 584
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 5 cut(s) 167, 224, 343, 364, 445
HpaII CCGG 1 cut(s) 11
HphI GGTGA 2 cut(s) 265, 338
Hpy166II GTNNAC 1 cut(s) 842
Hpy188I TCNGA 3 cut(s) 85, 534, 801
Hpy188III TCNNGA 3 cut(s) 164, 466, 677
Hpy8I GTNNAC 1 cut(s) 842
HpyCH4III ACNGT 3 cut(s) 385, 815, 825
HpyCH4IV ACGT 2 cut(s) 215, 729
HpyCH4V TGCA 2 cut(s) 61, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 456, 510
HpyF3I CTNAG 4 cut(s) 67, 82, 261, 621
HpySE526I ACGT 2 cut(s) 215, 729
Hsp92II CATG 3 cut(s) 364, 432, 584
Kzo9I GATC 2 cut(s) 228, 707
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 3 cut(s) 115, 464, 733
Lsp1109I GCAGC 1 cut(s) 701
MaeI CTAG 2 cut(s) 164, 725
MaeII ACGT 2 cut(s) 215, 729
MaeIII GTNAC 2 cut(s) 52, 544
MalI GATC 2 cut(s) 230, 709
MboI GATC 2 cut(s) 228, 707
MboII GAAGA 6 cut(s) 17, 115, 470, 640, 643, 743
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 5 cut(s) 18, 132, 434, 528, 702
MlyI GAGTC 2 cut(s) 218, 358
MnlI CCTC 4 cut(s) 238, 387, 624, 736
Mph1103I ATGCAT 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 750
MslI CAYNNNNRTG 2 cut(s) 467, 764
MspA1I CMGCKG 1 cut(s) 504
MspI CCGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 115, 456, 510
NdeII GATC 2 cut(s) 228, 707
NlaIII CATG 3 cut(s) 364, 432, 584
NlaIV GGNNCC 2 cut(s) 150, 603
NmuCI GTSAC 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 167, 343, 445
PkrI GCNGC 1 cut(s) 691
PleI GAGTC 2 cut(s) 218, 358
PpsI GAGTC 2 cut(s) 218, 358
PspFI CCCAGC 2 cut(s) 500, 504
PspN4I GGNNCC 2 cut(s) 150, 603
PspPI GGNCC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 504
RsaI GTAC 4 cut(s) 72, 281, 422, 812
RsaNI GTAC 4 cut(s) 71, 280, 421, 811
RseI CAYNNNNRTG 2 cut(s) 467, 764
SapI GCTCTTC 1 cut(s) 756
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 2 cut(s) 228, 707
Sau96I GGNCC 1 cut(s) 148
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 2 cut(s) 218, 358
SduI GDGCHC 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 467, 764
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 18, 132, 434, 528, 702
SspI AATATT 1 cut(s) 538
SspMI CTAG 2 cut(s) 164, 725
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 3 cut(s) 385, 815, 825
TaiI ACGT 2 cut(s) 218, 732
TaqI TCGA 3 cut(s) 186, 227, 706
TasI AATT 5 cut(s) 18, 132, 434, 528, 702
TatI WGTACW 3 cut(s) 70, 279, 420
TfiI GAWTC 3 cut(s) 167, 343, 445
TscAI CASTG 4 cut(s) 388, 549, 555, 820
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 1 cut(s) 689
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 2 cut(s) 339, 342
TspRI CASTG 4 cut(s) 388, 549, 555, 820
XbaI TCTAGA 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 2 cut(s) 164, 725
ZrmI AGTACT 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.