RLG00000031408

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004499
Physical Location & Seq
Reverse (-)
4863313 .. 4865118
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031408

Sequence Viewer

Length: 873 bp
ATGGATCGCGGGCAGTTGACCCTGCTAGGATCAGCTGGTTGTGTGATGCTCACAATGCATTTCACAGTCCAGTTATTGTCGCAACATCTCTTTTACTGGAAGAACCCAAAGGAACAGAAAGCTATAATAATTATCATTCTTATGGCTCCACTATATGCAATTGACTCATTTGTGGGTTTATTGGATATTCAAGGAAGCAAAGCAGTTTTCATGCTCTTAGACTCTATTAAGGAGTGTTACGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTAATGTATAGTTACCTGAACATATCTATAAGCAAAAATATTGTGCCAGATGAAATCAAAGGAAGAGAAATCCACCACTCTTTTCCAATGACTCTTTTTCAGCCTCACACTGTTCGGCTAAACCACCAAACCCTGAAGCTACTCAAATATTGGACTTGGCAGTTCGTCGTCATCCGCCCAGTTTTTTCTGTTTTGATGATAACACTACAAGTACTTGGAGTTTATCCCAGTTGGTTGAGCTGGACCTTCACTATCATTCTTAATGTTTCCGTTTCATTGGCATTGTACTCTCTGGTCGTGTTTTACCATGTGTTTGCAAAGGAACTGGAACCACATAAACCCCTTGCAAAGTTCATGTGCATCAAGGGAATTGTCTTCTTCTGCTTTTGGCAGGGAGTGGTCCTTGAGATATTAGCTGCTATCGGCATCATTCGATCTCATCATTTCTGGTTGGATGTGGAGCGCATTGAAGAAGCTATTCAGAATGTCTTGGTATGTCTTGAGATGGTCGTCTTCTCTGTTCTCCAGCAGTATGCCTACCATGTTGCACCTTACAGTGGAGACGTCGAAACAAAGATGAGATTAAACAAGAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

291

Amino Acids

33.52

Weight (kDa)

8.69

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 11 - 275 2.4e-75 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 837
AccII CGCG 1 cut(s) 9
AciI CCGC 2 cut(s) 9, 445
AclWI GGATC 2 cut(s) 12, 37
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 2 cut(s) 483, 557
AfiI CCNNNNNNNGG 1 cut(s) 827
AgsI TTSAA 2 cut(s) 191, 740
AluBI AGCT 6 cut(s) 35, 122, 409, 510, 686, 746
AluI AGCT 6 cut(s) 35, 122, 409, 510, 686, 746
Alw26I GTCTC 1 cut(s) 825
AlwI GGATC 2 cut(s) 12, 37
ApeKI GCWGC 1 cut(s) 686
Asp700I GAANNNNTTC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 2 cut(s) 513, 670
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 2 cut(s) 513, 670
BbsI GAAGAC 2 cut(s) 637, 775
BbvI GCAGC 1 cut(s) 673
BccI CCATC 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 825
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 687
BlsI GCNGC 1 cut(s) 688
BmcAI AGTACT 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 513, 670
BmgT120I GGNCC 2 cut(s) 513, 670
BmiI GGNNCC 2 cut(s) 147, 600
BmrI ACTGGG 2 cut(s) 443, 492
BmsI GCATC 3 cut(s) 36, 639, 705
BmuI ACTGGG 2 cut(s) 443, 492
BpiI GAAGAC 2 cut(s) 637, 775
BpmI CTGGAG 1 cut(s) 779
BpuEI CTTGAG 2 cut(s) 695, 791
BsaHI GRCGYC 1 cut(s) 834
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse1I ACTGG 5 cut(s) 70, 101, 449, 498, 600
BseGI GGATG 2 cut(s) 441, 730
BseLI CCNNNNNNNGG 1 cut(s) 827
BseNI ACTGG 5 cut(s) 70, 101, 449, 498, 600
BseXI GCAGC 1 cut(s) 673
Bsh1236I CGCG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 1 cut(s) 825
BsmBI CGTCTC 1 cut(s) 825
Bsp143I GATC 3 cut(s) 4, 29, 704
BspACI CCGC 2 cut(s) 9, 445
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 147, 600
BspPI GGATC 2 cut(s) 12, 37
BsrI ACTGG 5 cut(s) 70, 101, 449, 498, 600
BssMI GATC 3 cut(s) 4, 29, 704
BssNI GRCGYC 1 cut(s) 834
Bst4CI ACNGT 3 cut(s) 67, 382, 827
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 834
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 217, 258
BstF5I GGATG 2 cut(s) 441, 730
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 3 cut(s) 7, 32, 707
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 3 cut(s) 4, 29, 704
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 673
BstV2I GAAGAC 2 cut(s) 637, 775
BtsCI GGATG 2 cut(s) 441, 730
BtsIMutI CAGTG 2 cut(s) 378, 832
Cac8I GCNNGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 735
Cfr13I GGNCC 2 cut(s) 513, 670
Csp6I GTAC 2 cut(s) 482, 556
CviAII CATG 4 cut(s) 211, 578, 625, 812
CviQI GTAC 2 cut(s) 482, 556
DdeI CTNAG 2 cut(s) 217, 258
DpnI GATC 3 cut(s) 6, 31, 706
DpnII GATC 3 cut(s) 4, 29, 704
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
EciI GGCGGA 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 513, 670
Eco57I CTGAAG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 825
FaeI CATG 4 cut(s) 214, 581, 628, 815
FatI CATG 4 cut(s) 210, 577, 624, 811
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 1 cut(s) 687
FokI GGATG 2 cut(s) 428, 737
Fsp4HI GCNGC 1 cut(s) 687
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 734
GluI GCNGC 1 cut(s) 687
GsuI CTGGAG 1 cut(s) 779
HhaI GCGC 1 cut(s) 735
Hin1I GRCGYC 1 cut(s) 834
Hin1II CATG 4 cut(s) 214, 581, 628, 815
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 3 cut(s) 164, 221, 361
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 753
Hpy188III TCNNGA 1 cut(s) 770
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 2 cut(s) 440, 839
HpyAV CCTTC 2 cut(s) 526, 859
HpyCH4III ACNGT 3 cut(s) 67, 382, 827
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 6 cut(s) 58, 158, 587, 617, 630, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 2 cut(s) 217, 258
HpySE526I ACGT 1 cut(s) 834
Hsp92I GRCGYC 1 cut(s) 834
Hsp92II CATG 4 cut(s) 214, 581, 628, 815
HspAI GCGC 1 cut(s) 733
Kzo9I GATC 3 cut(s) 4, 29, 704
LmnI GCTCC 2 cut(s) 151, 730
Lsp1109I GCAGC 1 cut(s) 673
LweI GCATC 3 cut(s) 36, 639, 705
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 2 cut(s) 236, 281
MalI GATC 3 cut(s) 6, 31, 706
MboI GATC 3 cut(s) 4, 29, 704
MboII GAAGA 6 cut(s) 112, 345, 637, 640, 752, 775
MfeI CAATTG 1 cut(s) 159
MluCI AATT 3 cut(s) 129, 159, 639
MlyI GAGTC 3 cut(s) 158, 215, 355
MmeI TCCRAC 1 cut(s) 702
MnlI CCTC 2 cut(s) 235, 384
Mph1103I ATGCAT 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 747
MseI TTAA 3 cut(s) 228, 531, 854
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 35
MunI CAATTG 1 cut(s) 159
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 3 cut(s) 4, 29, 704
NlaIII CATG 4 cut(s) 214, 581, 628, 815
NlaIV GGNNCC 2 cut(s) 147, 600
NsiI ATGCAT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 747
PkrI GCNGC 1 cut(s) 688
PleI GAGTC 3 cut(s) 158, 215, 355
PpsI GAGTC 3 cut(s) 158, 215, 355
PspN4I GGNNCC 2 cut(s) 147, 600
PspPI GGNCC 2 cut(s) 513, 670
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 483, 557
RsaNI GTAC 2 cut(s) 482, 556
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 3 cut(s) 228, 531, 854
SatI GCNGC 1 cut(s) 687
Sau3AI GATC 3 cut(s) 4, 29, 704
Sau96I GGNCC 2 cut(s) 513, 670
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 3 cut(s) 158, 215, 355
SfaNI GCATC 3 cut(s) 36, 639, 705
SinI GGWCC 2 cut(s) 513, 670
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 674, 770
SmoI CTYRAG 2 cut(s) 674, 770
Sse9I AATT 3 cut(s) 129, 159, 639
SsiI CCGC 2 cut(s) 9, 445
SspI AATATT 2 cut(s) 310, 419
SspMI CTAG 1 cut(s) 26
TaaI ACNGT 3 cut(s) 67, 382, 827
TaiI ACGT 1 cut(s) 837
TaqI TCGA 2 cut(s) 703, 837
TasI AATT 3 cut(s) 129, 159, 639
TatI WGTACW 2 cut(s) 481, 555
Tru1I TTAA 3 cut(s) 228, 531, 854
Tru9I TTAA 3 cut(s) 228, 531, 854
TscAI CASTG 2 cut(s) 385, 832
TseI GCWGC 1 cut(s) 686
TspDTI ATGAA 4 cut(s) 199, 336, 534, 613
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 2 cut(s) 385, 832
VpaK11BI GGWCC 2 cut(s) 513, 670
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 835
ZrmI AGTACT 1 cut(s) 483
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.