Rh5CG274500

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004499
Physical Location & Seq
Forward (+)
29676870 .. 29680138
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG274500.1

Sequence Viewer

Length: 723 bp
ATGGCAAACCCTGCACAGATTACTCTTCTGGGCTCCACTTTCTGTGTGATGCTTACACTGCATTTCTCAGTACAGCTTCTCTCAGAGCACTTGTTCTGCTGGAAGAAGCCAAAGGAGCAGAAGGCCATACTCGTCATTATACTTATGGCTCCCTTGTATGCCATAGATTCCTATGTGGGCTTGATTGATTTCCAAGGAAGCAAAGCTTTCTTTATGTTCTTGGACTCGGTCAAGGAGTGCTATGAAGCTTTGGTGATAGCTAAGTTCTTGGCTTTGCTGTATAGCTACTTGAACATATCGATAAGTAAAAACATAGTGCCTGATGAGATCAAAGGGAGGGAGATTCACCATTCGTTTCCAATGACTCTGTTTGTGCCTCGCTCTGTTCGTTTGAACCATCATACACTGAAGCTTCTCAAATACTGGACATGGCAATTTGTTGTTATTCGCCCTGTGTGCTCCATCTTGATGATTAGTCTTCAACTTATTGGAGTATATCCCAGTTGGGTTAGCTGGACATTCACTATGATTTTGAACATTTCAGTGTCACTGGCTCTGTATTCTCTTGTCATTTTCTACCATGTCTTTGATAAGGAGCTGGCACCACACAAGCCTCTTGCTAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTGCTTTTGGCAGGTAATTAATAATTCTCACTCTCCTCCCCTTTATGTCAATTGTCAAGCCATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

240

Amino Acids

27.67

Weight (kDa)

9.03

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 11 - 223 5.8e-58 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 4 cut(s) 292, 394, 482, 535
AluBI AGCT 8 cut(s) 76, 206, 248, 260, 285, 412, 513, 598
AluI AGCT 8 cut(s) 76, 206, 248, 260, 285, 412, 513, 598
Alw21I GWGCWC 2 cut(s) 90, 461
AoxI GGCC 1 cut(s) 123
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AseI ATTAAT 1 cut(s) 672
AsuHPI GGTGA 2 cut(s) 265, 338
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 470, 640
Bbv12I GWGCWC 2 cut(s) 90, 461
BccI CCATC 2 cut(s) 405, 470
BfuAI ACCTGC 1 cut(s) 655
BmiI GGNNCC 3 cut(s) 34, 150, 603
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 39, 642
BmuI ACTGGG 1 cut(s) 495
BpiI GAAGAC 2 cut(s) 470, 640
Bsa29I ATCGAT 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 428, 501, 555
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 81, 96
BseNI ACTGG 3 cut(s) 428, 501, 555
BseRI GAGGAG 1 cut(s) 678
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 90, 461
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 3 cut(s) 35, 90, 461
Bsp143I GATC 1 cut(s) 327
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 80, 95
BspDI ATCGAT 1 cut(s) 299
BspLI GGNNCC 3 cut(s) 34, 150, 603
BspMI ACCTGC 1 cut(s) 655
BspT107I GGYRCC 1 cut(s) 601
BsrI ACTGG 3 cut(s) 428, 501, 555
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 4 cut(s) 67, 82, 261, 621
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 4 cut(s) 11, 58, 115, 456
BstV2I GAAGAC 2 cut(s) 470, 640
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 4 cut(s) 56, 404, 548, 549
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 600
ClaI ATCGAT 1 cut(s) 299
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 429, 581
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 4 cut(s) 67, 82, 261, 621
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 432, 584
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 2 cut(s) 428, 580
FriOI GRGCYC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 2 cut(s) 432, 584
HindIII AAGCTT 3 cut(s) 204, 246, 410
HinfI GANTC 4 cut(s) 167, 224, 343, 364
HphI GGTGA 2 cut(s) 265, 338
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 466
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 14, 61, 633
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 58, 115, 456
HpyF3I CTNAG 4 cut(s) 67, 82, 261, 621
Hsp92II CATG 2 cut(s) 432, 584
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 5 cut(s) 38, 115, 154, 464, 595
LweI GCATC 2 cut(s) 39, 642
MaeIII GTNAC 1 cut(s) 546
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 5 cut(s) 17, 115, 470, 640, 643
MfeI CAATTG 1 cut(s) 703
MhlI GDGCHC 3 cut(s) 35, 90, 461
MluCI AATT 4 cut(s) 434, 669, 676, 703
MlyI GAGTC 2 cut(s) 218, 358
MnlI CCTC 4 cut(s) 330, 387, 624, 699
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 2 cut(s) 467, 542
MunI CAATTG 1 cut(s) 703
MwoI GCNNNNNNNGC 4 cut(s) 11, 58, 115, 456
NdeII GATC 1 cut(s) 327
NlaIII CATG 2 cut(s) 432, 584
NlaIV GGNNCC 3 cut(s) 34, 150, 603
NmuCI GTSAC 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 2 cut(s) 167, 343
PflFI GACNNNGTC 1 cut(s) 227
PleI GAGTC 2 cut(s) 218, 358
PpsI GAGTC 2 cut(s) 218, 358
PshBI ATTAAT 1 cut(s) 672
PspN4I GGNNCC 3 cut(s) 34, 150, 603
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 2 cut(s) 467, 542
SaqAI TTAA 1 cut(s) 672
Sau3AI GATC 1 cut(s) 327
SchI GAGTC 2 cut(s) 218, 358
SduI GDGCHC 3 cut(s) 35, 90, 461
SetI ASST 9 cut(s) 78, 208, 250, 262, 287, 414, 515, 600, 669
SfaNI GCATC 2 cut(s) 39, 642
SmiMI CAYNNNNRTG 2 cut(s) 467, 542
Sse9I AATT 4 cut(s) 434, 669, 676, 703
StyI CCWWGG 1 cut(s) 193
TaqI TCGA 1 cut(s) 299
TaqII GACCGA 1 cut(s) 217
TasI AATT 4 cut(s) 434, 669, 676, 703
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 2 cut(s) 167, 343
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 4 cut(s) 63, 411, 549, 555
TseFI GTSAC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 4 cut(s) 63, 411, 549, 555
Tth111I GACNNNGTC 1 cut(s) 227
VspI ATTAAT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.