FvH4_3g04241

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004499
Physical Location & Seq
Reverse (-)
2388143 .. 2389916
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04241.t1

Sequence Viewer

Length: 888 bp
ATGGATTTTAGTACAATGGATCGCGGGCAGTTGACCCTGCTAGGATCAGCTGGTTGCGTGATGCTCACAATGCATTTCACAGTCCAGTTATTGTCACAGCATCTCTTTTACTGGAAGAACCCAAAGGAACAGAAAGCTATAATAATTATCATTCTTATGGCTCCACTATATGCAATTGACTCATTTGTGGGTTTATTGGATATTCAAGGAAGCAAAGCATTTTTCATGCTGTTAGACTCTATTAAGGAGTGTTACGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTAATGTATAGTTACCTGAACATATCTCTAAGCAAAGGTATTGTGCCAGACGAAATCAAAGGAAGAGAAATCCACCACTCTTTTCCAATGACTCTTTTTCAGCCTCACACAGTTCGGCTAAATCACCAAACCCTGAAGCTACTCAAATATTGGACTTGGCAATTCGTCGTCATCCGCCCACTTTTTTCTGTTTTGATGATAACACTACAATTACTTGGAGTTTATCCCAGTTGGTTGAGCTGGACCTTCACAATCATTCTTAATGTTTCTGTTTCATTGGCATTATACTCTCTGGTTGTGTTTTACCATGTGTTTGCAAAGGAACTAGAACCACATAAACCCCTTGCAAAGTTCATGTGCATCAAGGGCATCGTCTTCTTCTGCTTTTGGCAGGGAGTGGTCCTTAAGATATTAGCTGCTATCGGTATCATTCGATCTCATCATTTCTGGTTGGATGTGGAGCATATTAACGAAGCTATTCAGAATGTTTTGATATGTCTTGAGATGGTTGTCTTCTCTGTTCTTCAGCAATATGCATATCATGTTGCACCTTACAGTGGAGACGTTGAAACAAAGATGAGAGTAAACAAGAAGAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

296

Amino Acids

34.07

Weight (kDa)

8.69

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 16 - 280 2.1e-75 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 24, 460
AclWI GGATC 2 cut(s) 27, 52
AcuI CTGAAG 2 cut(s) 440, 794
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 842
AflII CTTAAG 1 cut(s) 689
AgsI TTSAA 2 cut(s) 206, 854
AluBI AGCT 6 cut(s) 50, 137, 424, 525, 701, 761
AluI AGCT 6 cut(s) 50, 137, 424, 525, 701, 761
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 2 cut(s) 27, 52
ApeKI GCWGC 1 cut(s) 701
Asp700I GAANNNNTTC 1 cut(s) 762
AspS9I GGNCC 2 cut(s) 528, 685
AsuHPI GGTGA 2 cut(s) 277, 401
AvaII GGWCC 2 cut(s) 528, 685
BbsI GAAGAC 2 cut(s) 652, 790
BbvI GCAGC 1 cut(s) 688
BccI CCATC 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 2 cut(s) 41, 611
BfrI CTTAAG 1 cut(s) 689
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
Bme18I GGWCC 2 cut(s) 528, 685
BmgT120I GGNCC 2 cut(s) 528, 685
BmiI GGNNCC 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 4 cut(s) 51, 109, 654, 663
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 652, 790
BpuEI CTTGAG 1 cut(s) 806
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 3 cut(s) 85, 116, 513
BseGI GGATG 2 cut(s) 456, 745
BseLI CCNNNNNNNGG 1 cut(s) 842
BseNI ACTGG 3 cut(s) 85, 116, 513
BseXI GCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 840
BsmBI CGTCTC 1 cut(s) 840
Bsp143I GATC 3 cut(s) 19, 44, 719
BspACI CCGC 2 cut(s) 24, 460
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 2 cut(s) 27, 52
BspTI CTTAAG 1 cut(s) 689
BsrI ACTGG 3 cut(s) 85, 116, 513
BssMI GATC 3 cut(s) 19, 44, 719
Bst4CI ACNGT 3 cut(s) 82, 397, 842
Bst6I CTCTTC 1 cut(s) 343
BstAFI CTTAAG 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 273, 314
BstF5I GGATG 2 cut(s) 456, 745
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 22, 47, 722
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 3 cut(s) 19, 44, 719
BstMWI GCNNNNNNNGC 2 cut(s) 70, 651
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 2 cut(s) 652, 790
BtsCI GGATG 2 cut(s) 456, 745
BtsIMutI CAGTG 1 cut(s) 847
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 528, 685
Csp6I GTAC 1 cut(s) 12
CviAII CATG 4 cut(s) 226, 593, 640, 827
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 273, 314
DpnI GATC 3 cut(s) 21, 46, 721
DpnII GATC 3 cut(s) 19, 44, 719
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
EciI GGCGGA 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 528, 685
Eco57I CTGAAG 2 cut(s) 440, 794
EcoT22I ATGCAT 2 cut(s) 75, 823
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 4 cut(s) 229, 596, 643, 830
FatI CATG 4 cut(s) 225, 592, 639, 826
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 2 cut(s) 443, 752
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 2 cut(s) 41, 611
GluI GCNGC 1 cut(s) 702
Hin1II CATG 4 cut(s) 229, 596, 643, 830
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 179, 236, 376
HphI GGTGA 2 cut(s) 277, 401
Hpy166II GTNNAC 2 cut(s) 33, 871
Hpy188I TCNGA 1 cut(s) 768
Hpy188III TCNNGA 1 cut(s) 785
Hpy8I GTNNAC 2 cut(s) 33, 871
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 3 cut(s) 82, 397, 842
HpyCH4IV ACGT 1 cut(s) 849
HpyCH4V TGCA 7 cut(s) 73, 173, 602, 632, 645, 821, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 651
HpyF3I CTNAG 2 cut(s) 273, 314
HpySE526I ACGT 1 cut(s) 849
Hsp92II CATG 4 cut(s) 229, 596, 643, 830
Kzo9I GATC 3 cut(s) 19, 44, 719
LmnI GCTCC 2 cut(s) 166, 745
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 4 cut(s) 51, 109, 654, 663
MaeI CTAG 2 cut(s) 41, 611
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 3 cut(s) 93, 251, 296
MalI GATC 3 cut(s) 21, 46, 721
MboI GATC 3 cut(s) 19, 44, 719
MboII GAAGA 6 cut(s) 127, 360, 652, 655, 790, 800
MfeI CAATTG 1 cut(s) 174
MluCI AATT 4 cut(s) 144, 174, 446, 494
MlyI GAGTC 3 cut(s) 173, 230, 370
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 2 cut(s) 250, 399
Mph1103I ATGCAT 2 cut(s) 75, 823
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 4 cut(s) 243, 546, 690, 753
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 689
MunI CAATTG 1 cut(s) 174
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 70, 651
NdeII GATC 3 cut(s) 19, 44, 719
NlaIII CATG 4 cut(s) 229, 596, 643, 830
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 93
NsiI ATGCAT 2 cut(s) 75, 823
PdmI GAANNNNTTC 1 cut(s) 762
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 3 cut(s) 173, 230, 370
PpsI GAGTC 3 cut(s) 173, 230, 370
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 528, 685
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 4 cut(s) 243, 546, 690, 753
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 3 cut(s) 19, 44, 719
Sau96I GGNCC 2 cut(s) 528, 685
SchI GAGTC 3 cut(s) 173, 230, 370
SfaNI GCATC 4 cut(s) 51, 109, 654, 663
SinI GGWCC 2 cut(s) 528, 685
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 689, 785
SmoI CTYRAG 2 cut(s) 689, 785
Sse9I AATT 4 cut(s) 144, 174, 446, 494
SsiI CCGC 2 cut(s) 24, 460
SspI AATATT 1 cut(s) 434
SspMI CTAG 2 cut(s) 41, 611
TaaI ACNGT 3 cut(s) 82, 397, 842
TaiI ACGT 1 cut(s) 852
TaqI TCGA 1 cut(s) 718
TasI AATT 4 cut(s) 144, 174, 446, 494
TatI WGTACW 1 cut(s) 11
Tru1I TTAA 4 cut(s) 243, 546, 690, 753
Tru9I TTAA 4 cut(s) 243, 546, 690, 753
TscAI CASTG 1 cut(s) 847
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 3 cut(s) 214, 549, 628
TspRI CASTG 1 cut(s) 847
Vha464I CTTAAG 1 cut(s) 689
VpaK11BI GGWCC 2 cut(s) 528, 685
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 2 cut(s) 41, 611
Zsp2I ATGCAT 2 cut(s) 75, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.