FvH4_3g22650

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
15689559 .. 15694023
4465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22650.t1

Sequence Viewer

Length: 1755 bp
ATGTCGGCCAGGAAGCTCGCCGCCGGACTCTGGCGGCTACAGTTGCCGGAGATGGGTGTCGAGAGACGGAGTGAACCGCAGTTAGGGTTTCAGCCTGATGCTGGCCATATTGGGGCACCATTTCTTCGCCAACGGAATAGCAAAGGATTTTCTTCTGAAGCTAAGGATAATTTACAAAGCCCTGGTTCCACCTCAAGGAGTGGATTCTTGCGCAAGTTATCAAACTCTGTCATGGAGGGTGCAACAAAATGGGATCCTGTCTGCTTAAAATCATCAGAAGAGGCTCGCCAGATTTACAGCCAAATGAAGCTTCTTGACCAACAAGCGAGTGCTGCATCAGTGGTGAATGTACTTGAATCTGAATTAGAGCAGGCTCGAGCCCGCATCCAGGAGCTTGAGTTGGAGCGACGTTCCTCAAAAAAGAAACTGGAACACTTCTTGAGGAACATGAATGAGGAAAAGGTTTCATGGCGGAGCAGAGAGCATGAGAAAATTCGTGCATTTATTGACGACATCAAGGTTGAATTGAACCGAGAAAGAAAGAGTCGTCAGAGAACTGAAATACTCAATTCCAAATTGGTGAATGAGCTTGCTGATACCAAGTTATCTGCAAAGCGATACATGCAGGACTACGAAAAGGAAAGAAAGGCAAGAGAGTTAATTGAGGAAGTATGTGATGAGCTTGCTAAGGAAATTGGAGAAGACAAGGCTGAAGTTGAAGCATTAAAGAGAGAATCCATGAAACTTAGAGATGAAGTGGAAGAGGAAAGGAAGATGTTGCAGATGGCTGAGGTCTGGCGTGAGGAACGTGTTCAAATGAAGCTTGTTGATGCAAAGGTGGCAGTTGAAGAGAAGTATTCTCTGATGAACAAACTTGTGGCAGATCTTGAGAATTTTTTGAAGTCAAGAAGTTCAACCCCAGAGGTGAAGGAAGTGAGAGAAGGAGAGTTTCTTCGACAGGCTGCTGCTGCTGTAAACATTCAAGACGTCAAGGACTTTTCTTATGAACCCCCAAATCCTGATGATATCTTTTCTGTGTTTGAAGAAGTTAATTTTGGTGAGCCTAATGAGAGGGAGATTGAACAGTGTGTTGCTTACAGTCCTGTTAGCCATGCTTCCAAAATTCGTACCGTGAGTCCTGAAGCTAATGGAATCCATAAAAATCGGATCCAGAGGCACGCAATTGCATATGTTGGTGAGAATGGTGACATAGAAGAAGATGAGAGTGGATGGGAAACTGTCAGCCATCTTGAGTCAAGCTATTCGCCAGATGGGAGTGCCCCATCAGTCAATAAGAATCACCGAGAGAGTAACGTCTCAGAGAGTGGAACCGAGTGGGAAGAAGAAAACTATGGGGAGGAAACACCAATTACTGAAATCAGTGAGGTTTGCTCGGTGCCAACAAAGCAGTCAAAGAAGGTCTCAAGTATAGCAAGGCTTTGGAGATCTGGTCTGAATAGTGAAGATAACTACAAGATTATCTCGGTAGAGGGAATAAATGGTAGGCTCTCAAATGGAAGGATATCCAATGGGGGTATTTTGTCTCCGGATCGAGGGTCAGGTAAAGGTGGTTTCAGCCCCTCTGATTTAGTGGGGCAGTGGAGTTCACCAGACTCTGGGAATCATCATATTCGGGGTATGAAAGGGTGCATCCCTCTTGGCGCGCAGAAGAACAGTTTGAAGGCAAGACTGTTGGAGGCAAGGTTGGACAGTCAAAAAGTCCAACTGCGTCATGTGCTTAAACAGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

585

Amino Acids

66.17

Weight (kDa)

5.96

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 990
Acc16I TGCGCA 1 cut(s) 212
AccB1I GGYRCC 2 cut(s) 115, 1396
AccB7I CCANNNNNTGG 1 cut(s) 1616
AccII CGCG 1 cut(s) 1664
AccIII TCCGGA 1 cut(s) 1546
AciI CCGC 5 cut(s) 21, 34, 77, 382, 472
AclWI GGATC 5 cut(s) 248, 261, 1162, 1175, 1557
AcoI YGGCCR 2 cut(s) 6, 103
AcsI RAATTY 3 cut(s) 492, 892, 1122
AcuI CTGAAG 3 cut(s) 177, 732, 1161
AcyI GRCGYC 1 cut(s) 987
AfaI GTAC 2 cut(s) 351, 1129
AfiI CCNNNNNNNGG 9 cut(s) 30, 53, 83, 101, 112, 195, 388, 1553, 1616
AflIII ACRYGT 1 cut(s) 808
AjnI CCWGG 3 cut(s) 8, 181, 387
AjuI GAANNNNNNNTTGG 4 cut(s) 294, 326, 1038, 1070
AluBI AGCT 9 cut(s) 16, 161, 310, 394, 589, 682, 823, 1145, 1260
AluI AGCT 9 cut(s) 16, 161, 310, 394, 589, 682, 823, 1145, 1260
Alw26I GTCTC 4 cut(s) 58, 1321, 1426, 1548
AlwI GGATC 5 cut(s) 248, 261, 1162, 1175, 1557
AlwNI CAGNNNCTG 1 cut(s) 1616
Ama87I CYCGRG 1 cut(s) 375
Aor13HI TCCGGA 1 cut(s) 1546
AoxI GGCC 2 cut(s) 6, 103
ApeKI GCWGC 4 cut(s) 332, 962, 965, 968
ApoI RAATTY 3 cut(s) 492, 892, 1122
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 3 cut(s) 213, 1664, 1666
AsuHPI GGTGA 8 cut(s) 355, 592, 937, 1070, 1208, 1217, 1292, 1599
AvaI CYCGRG 1 cut(s) 375
BaeGI GKGCMC 2 cut(s) 118, 1282
BalI TGGCCA 1 cut(s) 105
BamHI GGATCC 2 cut(s) 253, 1167
BanI GGYRCC 2 cut(s) 115, 1396
BanII GRGCYC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 4 cut(s) 319, 949, 952, 955
BccI CCATC 6 cut(s) 46, 778, 1224, 1254, 1265, 1291
BciT130I CCWGG 3 cut(s) 10, 183, 389
BcoDI GTCTC 4 cut(s) 58, 1321, 1426, 1548
BfaI CTAG 1 cut(s) 1753
BfmI CTRYAG 1 cut(s) 38
BglII AGATCT 3 cut(s) 883, 1445, 1749
BisI GCNGC 6 cut(s) 21, 35, 333, 963, 966, 969
BlsI GCNGC 6 cut(s) 22, 36, 334, 964, 967, 970
Bme1390I CCNGG 3 cut(s) 10, 183, 389
BmeT110I CYCGRG 1 cut(s) 375
BmiI GGNNCC 6 cut(s) 117, 187, 255, 1169, 1330, 1398
BmrFI CCNGG 3 cut(s) 10, 183, 389
BmsI GCATC 5 cut(s) 88, 344, 393, 820, 1659
BpiI GAAGAC 1 cut(s) 708
BplI GAGNNNNNCTC 2 cut(s) 1376, 1408
Bpu10I CCTNAGC 3 cut(s) 162, 687, 789
BpuEI CTTGAG 6 cut(s) 178, 416, 460, 908, 1271, 1408
BsaHI GRCGYC 1 cut(s) 987
BsaI GGTCTC 1 cut(s) 1426
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 1546
BsaXI ACNNNNNCTCC 6 cut(s) 383, 413, 1435, 1465, 1688, 1718
Bsc4I CCNNNNNNNGG 9 cut(s) 30, 53, 83, 101, 112, 195, 388, 1553, 1616
Bse1I ACTGG 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 1546
BseBI CCWGG 3 cut(s) 10, 183, 389
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 3 cut(s) 384, 1235, 1650
BseLI CCNNNNNNNGG 9 cut(s) 30, 53, 83, 101, 112, 195, 388, 1553, 1616
BseMII CTCAG 2 cut(s) 780, 1332
BseNI ACTGG 1 cut(s) 432
BsePI GCGCGC 1 cut(s) 1662
BseSI GKGCMC 2 cut(s) 118, 1282
BseXI GCAGC 4 cut(s) 319, 949, 952, 955
Bsh1236I CGCG 1 cut(s) 1664
BshFI GGCC 2 cut(s) 8, 105
BshNI GGYRCC 2 cut(s) 115, 1396
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 3 cut(s) 24, 47, 1547
BslI CCNNNNNNNGG 9 cut(s) 30, 53, 83, 101, 112, 195, 388, 1553, 1616
BsmAI GTCTC 4 cut(s) 58, 1321, 1426, 1548
BsmBI CGTCTC 2 cut(s) 58, 1321
BsnI GGCC 2 cut(s) 8, 105
Bso31I GGTCTC 1 cut(s) 1426
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 3 cut(s) 118, 382, 1282
Bsp13I TCCGGA 1 cut(s) 1546
Bsp143I GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
BspACI CCGC 5 cut(s) 21, 34, 77, 382, 472
BspANI GGCC 2 cut(s) 8, 105
BspCNI CTCAG 2 cut(s) 781, 1331
BspEI TCCGGA 1 cut(s) 1546
BspFNI CGCG 1 cut(s) 1664
BspLI GGNNCC 6 cut(s) 117, 187, 255, 1169, 1330, 1398
BspPI GGATC 5 cut(s) 248, 261, 1162, 1175, 1557
BspT107I GGYRCC 2 cut(s) 115, 1396
BspTNI GGTCTC 1 cut(s) 1426
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 181
BssHII GCGCGC 1 cut(s) 1662
BssMI GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
BssNI GRCGYC 1 cut(s) 987
Bst2UI CCWGG 3 cut(s) 10, 183, 389
Bst4CI ACNGT 8 cut(s) 42, 1086, 1100, 1132, 1240, 1676, 1692, 1712
Bst6I CTCTTC 3 cut(s) 273, 756, 843
BstACI GRCGYC 1 cut(s) 987
BstC8I GCNNGC 9 cut(s) 18, 103, 286, 372, 382, 591, 684, 1179, 1664
BstDEI CTNAG 5 cut(s) 162, 687, 746, 789, 1318
BstF5I GGATG 3 cut(s) 384, 1235, 1650
BstFNI CGCG 1 cut(s) 1664
BstHHI GCGC 3 cut(s) 213, 1664, 1666
BstKTI GATC 6 cut(s) 256, 886, 1170, 1448, 1552, 1752
BstMAI GTCTC 4 cut(s) 58, 1321, 1426, 1548
BstMBI GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
BstMWI GCNNNNNNNGC 7 cut(s) 43, 332, 622, 839, 968, 1405, 1735
BstNI CCWGG 3 cut(s) 10, 183, 389
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 3 cut(s) 8, 181, 387
BstSFI CTRYAG 1 cut(s) 38
BstSLI GKGCMC 2 cut(s) 118, 1282
BstUI CGCG 1 cut(s) 1664
BstV1I GCAGC 4 cut(s) 319, 949, 952, 955
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 5 cut(s) 253, 883, 1167, 1445, 1749
BstYI RGATCY 5 cut(s) 253, 883, 1167, 1445, 1749
BsuRI GGCC 2 cut(s) 8, 105
BtsCI GGATG 3 cut(s) 384, 1235, 1650
BtsI GCAGTG 1 cut(s) 1604
BtsIMutI CAGTG 4 cut(s) 345, 1091, 1387, 1604
Cac8I GCNNGC 9 cut(s) 18, 103, 286, 372, 382, 591, 684, 1179, 1664
CaiI CAGNNNCTG 1 cut(s) 1616
CfoI GCGC 3 cut(s) 213, 1664, 1666
CseI GACGC 1 cut(s) 1718
Csp6I GTAC 2 cut(s) 350, 1128
CviAII CATG 8 cut(s) 232, 448, 468, 485, 622, 739, 1112, 1733
CviQI GTAC 2 cut(s) 350, 1128
DdeI CTNAG 5 cut(s) 162, 687, 746, 789, 1318
DpnI GATC 6 cut(s) 255, 885, 1169, 1447, 1551, 1751
DpnII GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
EaeI YGGCCR 2 cut(s) 6, 103
Eam1104I CTCTTC 3 cut(s) 273, 756, 843
EarI CTCTTC 3 cut(s) 273, 756, 843
EciI GGCGGA 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 1426
Eco32I GATATC 2 cut(s) 1027, 1524
Eco57I CTGAAG 3 cut(s) 177, 732, 1161
Eco88I CYCGRG 1 cut(s) 375
EcoRII CCWGG 3 cut(s) 8, 181, 387
EcoRV GATATC 2 cut(s) 1027, 1524
EcoT38I GRGCYC 1 cut(s) 382
Esp3I CGTCTC 2 cut(s) 58, 1321
FaeI CATG 8 cut(s) 235, 451, 471, 488, 625, 742, 1115, 1736
FatI CATG 8 cut(s) 231, 447, 467, 484, 621, 738, 1111, 1732
FauI CCCGC 1 cut(s) 389
FauNDI CATATG 1 cut(s) 1189
Fnu4HI GCNGC 6 cut(s) 21, 35, 333, 963, 966, 969
FokI GGATG 3 cut(s) 371, 1242, 1637
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 6 cut(s) 21, 35, 333, 963, 966, 969
FspBI CTAG 1 cut(s) 1753
FspI TGCGCA 1 cut(s) 212
GlaI GCGC 3 cut(s) 212, 1663, 1665
GluI GCNGC 6 cut(s) 21, 35, 333, 963, 966, 969
HaeIII GGCC 2 cut(s) 8, 105
HapII CCGG 3 cut(s) 24, 47, 1547
HgaI GACGC 1 cut(s) 1718
HhaI GCGC 3 cut(s) 213, 1664, 1666
Hin1I GRCGYC 1 cut(s) 987
Hin1II CATG 8 cut(s) 235, 451, 471, 488, 625, 742, 1115, 1736
Hin6I GCGC 3 cut(s) 211, 1662, 1664
HinP1I GCGC 3 cut(s) 211, 1662, 1664
HindIII AAGCTT 2 cut(s) 308, 821
HpaII CCGG 3 cut(s) 24, 47, 1547
HphI GGTGA 8 cut(s) 355, 592, 937, 1070, 1208, 1217, 1292, 1599
Hpy166II GTNNAC 3 cut(s) 74, 976, 1607
Hpy188I TCNGA 9 cut(s) 157, 277, 361, 552, 864, 1167, 1321, 1455, 1585
Hpy8I GTNNAC 3 cut(s) 74, 976, 1607
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 5 cut(s) 922, 935, 1411, 1512, 1675
HpyCH4III ACNGT 8 cut(s) 42, 1086, 1100, 1132, 1240, 1676, 1692, 1712
HpyCH4IV ACGT 4 cut(s) 409, 808, 987, 1314
HpyCH4V TGCA 9 cut(s) 242, 335, 500, 611, 625, 781, 833, 1187, 1650
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 332, 622, 839, 968, 1405, 1735
HpyF3I CTNAG 5 cut(s) 162, 687, 746, 789, 1318
HpySE526I ACGT 4 cut(s) 409, 808, 987, 1314
Hsp92I GRCGYC 1 cut(s) 987
Hsp92II CATG 8 cut(s) 235, 451, 471, 488, 625, 742, 1115, 1736
HspAI GCGC 3 cut(s) 211, 1662, 1664
Kpn2I TCCGGA 1 cut(s) 1546
Kzo9I GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
LmnI GCTCC 3 cut(s) 391, 403, 474
Lsp1109I GCAGC 4 cut(s) 319, 949, 952, 955
LweI GCATC 5 cut(s) 88, 344, 393, 820, 1659
MaeI CTAG 1 cut(s) 1753
MaeII ACGT 4 cut(s) 409, 808, 987, 1314
MaeIII GTNAC 2 cut(s) 1205, 1310
MalI GATC 6 cut(s) 255, 885, 1169, 1447, 1551, 1751
MboI GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 5 cut(s) 253, 883, 1167, 1445, 1749
MhlI GDGCHC 3 cut(s) 118, 382, 1282
MlsI TGGCCA 1 cut(s) 105
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 5 cut(s) 21, 553, 1144, 1262, 1607
MmeI TCCRAC 4 cut(s) 381, 1674, 1686, 1747
Mox20I TGGCCA 1 cut(s) 105
MroI TCCGGA 1 cut(s) 1546
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 1 cut(s) 105
MseI TTAA 5 cut(s) 266, 659, 725, 1050, 1740
Msp20I TGGCCA 1 cut(s) 105
MspI CCGG 3 cut(s) 24, 47, 1547
MspR9I CCNGG 3 cut(s) 10, 183, 389
MunI CAATTG 1 cut(s) 1182
MvaI CCWGG 3 cut(s) 10, 183, 389
MvnI CGCG 1 cut(s) 1664
MwoI GCNNNNNNNGC 7 cut(s) 43, 332, 622, 839, 968, 1405, 1735
NdeI CATATG 1 cut(s) 1189
NdeII GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
NlaIII CATG 8 cut(s) 235, 451, 471, 488, 625, 742, 1115, 1736
NlaIV GGNNCC 6 cut(s) 117, 187, 255, 1169, 1330, 1398
NmuCI GTSAC 1 cut(s) 1205
NsbI TGCGCA 1 cut(s) 212
NspI RCATGY 1 cut(s) 625
PaeR7I CTCGAG 1 cut(s) 375
PauI GCGCGC 1 cut(s) 1662
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 6 cut(s) 204, 356, 734, 1152, 1297, 1621
PflMI CCANNNNNTGG 1 cut(s) 1616
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 6 cut(s) 22, 36, 334, 964, 967, 970
PleI GAGTC 5 cut(s) 21, 552, 1143, 1261, 1607
PpsI GAGTC 5 cut(s) 21, 552, 1143, 1261, 1607
Psp6I CCWGG 3 cut(s) 8, 181, 387
PspGI CCWGG 3 cut(s) 8, 181, 387
PspN4I GGNNCC 6 cut(s) 117, 187, 255, 1169, 1330, 1398
PspXI VCTCGAGB 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 1616
PsuI RGATCY 5 cut(s) 253, 883, 1167, 1445, 1749
PteI GCGCGC 1 cut(s) 1662
RsaI GTAC 2 cut(s) 351, 1129
RsaNI GTAC 2 cut(s) 350, 1128
SaqAI TTAA 5 cut(s) 266, 659, 725, 1050, 1740
SatI GCNGC 6 cut(s) 21, 35, 333, 963, 966, 969
Sau3AI GATC 6 cut(s) 253, 883, 1167, 1445, 1549, 1749
SchI GAGTC 5 cut(s) 21, 553, 1144, 1262, 1607
ScrFI CCNGG 3 cut(s) 10, 183, 389
SduI GDGCHC 3 cut(s) 118, 382, 1282
SfaNI GCATC 5 cut(s) 88, 344, 393, 820, 1659
SfcI CTRYAG 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 375
SlaI CTCGAG 1 cut(s) 375
SmlI CTYRAG 7 cut(s) 193, 375, 395, 439, 887, 1250, 1423
SmoI CTYRAG 7 cut(s) 193, 375, 395, 439, 887, 1250, 1423
SsiI CCGC 5 cut(s) 21, 34, 77, 382, 472
SspMI CTAG 1 cut(s) 1753
StyD4I CCNGG 3 cut(s) 8, 181, 387
TaaI ACNGT 8 cut(s) 42, 1086, 1100, 1132, 1240, 1676, 1692, 1712
TaiI ACGT 4 cut(s) 412, 811, 990, 1317
TaqI TCGA 4 cut(s) 60, 376, 955, 1552
TatI WGTACW 1 cut(s) 349
TauI GCSGC 2 cut(s) 23, 37
TfiI GAWTC 6 cut(s) 204, 356, 734, 1152, 1297, 1621
Tru1I TTAA 5 cut(s) 266, 659, 725, 1050, 1740
Tru9I TTAA 5 cut(s) 266, 659, 725, 1050, 1740
TscAI CASTG 4 cut(s) 345, 1091, 1387, 1604
TseFI GTSAC 1 cut(s) 1205
TseI GCWGC 4 cut(s) 332, 962, 965, 968
Tsp45I GTSAC 1 cut(s) 1205
TspDTI ATGAA 9 cut(s) 320, 456, 464, 755, 768, 833, 881, 1020, 1655
TspGWI ACGGA 2 cut(s) 82, 148
TspRI CASTG 4 cut(s) 345, 1091, 1387, 1604
Van91I CCANNNNNTGG 1 cut(s) 1616
XapI RAATTY 3 cut(s) 492, 892, 1122
XceI RCATGY 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 1 cut(s) 1753
ZraI GACGTC 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.