BEST Arabidopsis thaliana protein match is
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G50660 |
| fragaria_vesca | FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 |
| malus_domestica | MD03G1201300.v1.1 MD11G1218700.v1.1 |
| prunus_persica | Prupe.4G212500_v2.0.a1 |
| pyrus_communis | pycom03g15260 pycom11g19260 |
| rosa_chinensis | RchiOBHm_Chr5g0039421 |
| rosa_laevigata | RLG00000033913 |
| rosa_multiflora | Rmu_co8501983.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00040560 Rroxscaffold_1G00041790 |
| rosa_rugosa | Rorug05G0179100 |
| rosa_samantha | Rh5AG265700 Rh5BG270300 Rh5CG303300 Rh5DG278300 |
| rosa_wichuraiana | Rw5G024900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1281 |
| Acc16I | TGCGCA | 2 cut(s) | 503, 1968 |
| AccB1I | GGYRCC | 1 cut(s) | 286 |
| AccBSI | CCGCTC | 1 cut(s) | 58 |
| AccII | CGCG | 1 cut(s) | 348 |
| AccIII | TCCGGA | 1 cut(s) | 1849 |
| AciI | CCGC | 8 cut(s) | 58, 62, 109, 205, 312, 346, 418, 763 |
| AclWI | GGATC | 7 cut(s) | 51, 539, 552, 1453, 1466, 1554, 1860 |
| AcoI | YGGCCR | 3 cut(s) | 59, 297, 394 |
| AcsI | RAATTY | 2 cut(s) | 783, 1413 |
| AcuI | CTGAAG | 4 cut(s) | 32, 468, 1023, 1452 |
| AcyI | GRCGYC | 2 cut(s) | 149, 1278 |
| AfaI | GTAC | 3 cut(s) | 576, 642, 1420 |
| AflIII | ACRYGT | 1 cut(s) | 1099 |
| AjiI | CACGTC | 1 cut(s) | 1048 |
| AjnI | CCWGG | 2 cut(s) | 299, 472 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 585, 617, 1329, 1361 |
| Alw21I | GWGCWC | 1 cut(s) | 409 |
| Alw26I | GTCTC | 4 cut(s) | 140, 335, 349, 1851 |
| AlwI | GGATC | 7 cut(s) | 51, 539, 552, 1453, 1466, 1554, 1860 |
| Ama87I | CYCGRG | 4 cut(s) | 81, 88, 143, 666 |
| Aor13HI | TCCGGA | 1 cut(s) | 1849 |
| AoxI | GGCC | 6 cut(s) | 59, 111, 140, 297, 394, 1753 |
| ApeKI | GCWGC | 4 cut(s) | 118, 370, 1256, 1259 |
| ApoI | RAATTY | 2 cut(s) | 783, 1413 |
| AseI | ATTAAT | 1 cut(s) | 950 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 494, 1101 |
| AspLEI | GCGC | 3 cut(s) | 350, 504, 1969 |
| AspS9I | GGNCC | 3 cut(s) | 111, 141, 1754 |
| AsuC2I | CCSGG | 7 cut(s) | 82, 83, 100, 115, 127, 673, 824 |
| AsuHPI | GGTGA | 6 cut(s) | 1361, 1499, 1508, 1557, 1592, 1902 |
| AvaI | CYCGRG | 4 cut(s) | 81, 88, 143, 666 |
| BaeGI | GKGCMC | 3 cut(s) | 291, 367, 1582 |
| BamHI | GGATCC | 2 cut(s) | 544, 1458 |
| BanI | GGYRCC | 1 cut(s) | 286 |
| BanII | GRGCYC | 3 cut(s) | 89, 673, 1883 |
| BbsI | GAAGAC | 2 cut(s) | 999, 1773 |
| Bbv12I | GWGCWC | 1 cut(s) | 409 |
| BbvCI | CCTCAGC | 1 cut(s) | 1080 |
| BbvI | GCAGC | 4 cut(s) | 105, 382, 1243, 1246 |
| BccI | CCATC | 4 cut(s) | 1069, 1515, 1545, 1649 |
| BciT130I | CCWGG | 2 cut(s) | 301, 474 |
| BciVI | GTATCC | 1 cut(s) | 169 |
| BcnI | CCSGG | 7 cut(s) | 82, 83, 100, 115, 127, 673, 824 |
| BcoDI | GTCTC | 4 cut(s) | 140, 335, 349, 1851 |
| BfaI | CTAG | 3 cut(s) | 374, 1398, 2056 |
| BfmI | CTRYAG | 1 cut(s) | 329 |
| BfuI | GTATCC | 1 cut(s) | 169 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 58 |
| BglII | AGATCT | 3 cut(s) | 1174, 1748, 2052 |
| BisI | GCNGC | 7 cut(s) | 59, 62, 119, 312, 371, 1257, 1260 |
| BlsI | GCNGC | 7 cut(s) | 60, 63, 120, 313, 372, 1258, 1261 |
| Bme1390I | CCNGG | 9 cut(s) | 82, 83, 100, 115, 127, 301, 474, 673, 824 |
| BmeT110I | CYCGRG | 4 cut(s) | 81, 88, 143, 666 |
| BmgBI | CACGTC | 1 cut(s) | 1048 |
| BmgT120I | GGNCC | 3 cut(s) | 111, 141, 1754 |
| BmiI | GGNNCC | 6 cut(s) | 137, 288, 478, 546, 1460, 1630 |
| BmrFI | CCNGG | 9 cut(s) | 82, 83, 100, 115, 127, 301, 474, 673, 824 |
| BmsI | GCATC | 3 cut(s) | 379, 877, 1962 |
| BpiI | GAAGAC | 2 cut(s) | 999, 1773 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1679, 1711 |
| BpmI | CTGGAG | 1 cut(s) | 343 |
| Bpu10I | CCTNAGC | 2 cut(s) | 978, 1080 |
| BpuEI | CTTGAG | 8 cut(s) | 89, 143, 469, 707, 751, 1199, 1540, 1562 |
| BpuMI | CCSGG | 7 cut(s) | 82, 83, 100, 115, 127, 673, 824 |
| Bsa29I | ATCGAT | 2 cut(s) | 798, 1446 |
| BsaHI | GRCGYC | 2 cut(s) | 149, 1278 |
| BsaI | GGTCTC | 1 cut(s) | 335 |
| BsaJI | CCNNGG | 6 cut(s) | 80, 81, 82, 98, 180, 472 |
| BsaWI | WCCGGW | 4 cut(s) | 34, 1455, 1849, 1912 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 399, 429, 674, 704, 1991, 2021 |
| Bse118I | RCCGGY | 2 cut(s) | 138, 392 |
| BseAI | TCCGGA | 1 cut(s) | 1849 |
| BseBI | CCWGG | 2 cut(s) | 301, 474 |
| BseCI | ATCGAT | 2 cut(s) | 798, 1446 |
| BseDI | CCNNGG | 6 cut(s) | 80, 81, 82, 98, 180, 472 |
| BseGI | GGATG | 2 cut(s) | 1526, 1953 |
| BseMII | CTCAG | 3 cut(s) | 1051, 1071, 1710 |
| BseRI | GAGGAG | 8 cut(s) | 197, 200, 245, 248, 264, 267, 274, 1154 |
| BseSI | GKGCMC | 3 cut(s) | 291, 367, 1582 |
| BseX3I | CGGCCG | 1 cut(s) | 59 |
| BseXI | GCAGC | 4 cut(s) | 105, 382, 1243, 1246 |
| BseYI | CCCAGC | 3 cut(s) | 11, 65, 366 |
| Bsh1236I | CGCG | 1 cut(s) | 348 |
| Bsh1285I | CGRYCG | 1 cut(s) | 62 |
| BshFI | GGCC | 6 cut(s) | 61, 113, 142, 299, 396, 1755 |
| BshNI | GGYRCC | 1 cut(s) | 286 |
| BshVI | ATCGAT | 2 cut(s) | 798, 1446 |
| BsiEI | CGRYCG | 1 cut(s) | 62 |
| BsiHKAI | GWGCWC | 1 cut(s) | 409 |
| BsiHKCI | CYCGRG | 4 cut(s) | 81, 88, 143, 666 |
| BsmAI | GTCTC | 4 cut(s) | 140, 335, 349, 1851 |
| BsmBI | CGTCTC | 2 cut(s) | 140, 349 |
| BsnI | GGCC | 6 cut(s) | 61, 113, 142, 299, 396, 1755 |
| Bso31I | GGTCTC | 1 cut(s) | 335 |
| BsoBI | CYCGRG | 4 cut(s) | 81, 88, 143, 666 |
| Bsp1286I | GDGCHC | 7 cut(s) | 89, 291, 367, 409, 673, 1582, 1883 |
| Bsp13I | TCCGGA | 1 cut(s) | 1849 |
| Bsp143I | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| BspACI | CCGC | 8 cut(s) | 58, 62, 109, 205, 312, 346, 418, 763 |
| BspANI | GGCC | 6 cut(s) | 61, 113, 142, 299, 396, 1755 |
| BspCNI | CTCAG | 3 cut(s) | 1050, 1072, 1709 |
| BspDI | ATCGAT | 2 cut(s) | 798, 1446 |
| BspEI | TCCGGA | 1 cut(s) | 1849 |
| BspFNI | CGCG | 1 cut(s) | 348 |
| BspLI | GGNNCC | 6 cut(s) | 137, 288, 478, 546, 1460, 1630 |
| BspPI | GGATC | 7 cut(s) | 51, 539, 552, 1453, 1466, 1554, 1860 |
| BspT107I | GGYRCC | 1 cut(s) | 286 |
| BspTNI | GGTCTC | 1 cut(s) | 335 |
| BsrBI | CCGCTC | 1 cut(s) | 58 |
| BsrFI | RCCGGY | 2 cut(s) | 138, 392 |
| BssAI | RCCGGY | 2 cut(s) | 138, 392 |
| BssECI | CCNNGG | 6 cut(s) | 80, 81, 82, 98, 180, 472 |
| BssMI | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| BssNI | GRCGYC | 2 cut(s) | 149, 1278 |
| Bst2UI | CCWGG | 2 cut(s) | 301, 474 |
| Bst4CI | ACNGT | 8 cut(s) | 333, 1377, 1391, 1423, 1531, 1805, 1979, 2015 |
| Bst6I | CTCTTC | 4 cut(s) | 237, 564, 827, 1047 |
| BstACI | GRCGYC | 2 cut(s) | 149, 1278 |
| BstDEI | CTNAG | 5 cut(s) | 891, 978, 1037, 1080, 1696 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 227 |
| BstF5I | GGATG | 2 cut(s) | 1526, 1953 |
| BstFNI | CGCG | 1 cut(s) | 348 |
| BstHHI | GCGC | 3 cut(s) | 350, 504, 1969 |
| BstKTI | GATC | 9 cut(s) | 46, 171, 547, 1177, 1461, 1549, 1751, 1855, 2055 |
| BstMAI | GTCTC | 4 cut(s) | 140, 335, 349, 1851 |
| BstMBI | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| BstMCI | CGRYCG | 1 cut(s) | 62 |
| BstNI | CCWGG | 2 cut(s) | 301, 474 |
| BstNSI | RCATGY | 1 cut(s) | 916 |
| BstSCI | CCNGG | 9 cut(s) | 80, 81, 98, 113, 125, 299, 472, 671, 822 |
| BstSFI | CTRYAG | 1 cut(s) | 329 |
| BstSLI | GKGCMC | 3 cut(s) | 291, 367, 1582 |
| BstUI | CGCG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 4 cut(s) | 105, 382, 1243, 1246 |
| BstV2I | GAAGAC | 2 cut(s) | 999, 1773 |
| BstX2I | RGATCY | 6 cut(s) | 43, 544, 1174, 1458, 1748, 2052 |
| BstYI | RGATCY | 6 cut(s) | 43, 544, 1174, 1458, 1748, 2052 |
| BstZI | CGGCCG | 1 cut(s) | 59 |
| Bsu15I | ATCGAT | 2 cut(s) | 798, 1446 |
| BsuI | GTATCC | 1 cut(s) | 169 |
| BsuRI | GGCC | 6 cut(s) | 61, 113, 142, 299, 396, 1755 |
| BsuTUI | ATCGAT | 2 cut(s) | 798, 1446 |
| BtrI | CACGTC | 1 cut(s) | 1048 |
| BtsCI | GGATG | 2 cut(s) | 1526, 1953 |
| BtsI | GCAGTG | 1 cut(s) | 1907 |
| BtsIMutI | CAGTG | 5 cut(s) | 636, 1382, 1690, 1704, 1907 |
| CciNI | GCGGCCGC | 1 cut(s) | 59 |
| CfoI | GCGC | 3 cut(s) | 350, 504, 1969 |
| Cfr10I | RCCGGY | 2 cut(s) | 138, 392 |
| Cfr13I | GGNCC | 3 cut(s) | 111, 141, 1754 |
| Cfr9I | CCCGGG | 1 cut(s) | 81 |
| ClaI | ATCGAT | 2 cut(s) | 798, 1446 |
| CseI | GACGC | 4 cut(s) | 157, 606, 1130, 2021 |
| Csp6I | GTAC | 3 cut(s) | 575, 641, 1419 |
| CviAII | CATG | 8 cut(s) | 292, 523, 739, 759, 776, 913, 1403, 2036 |
| CviQI | GTAC | 3 cut(s) | 575, 641, 1419 |
| DdeI | CTNAG | 5 cut(s) | 891, 978, 1037, 1080, 1696 |
| DpnI | GATC | 9 cut(s) | 45, 170, 546, 1176, 1460, 1548, 1750, 1854, 2054 |
| DpnII | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| EaeI | YGGCCR | 3 cut(s) | 59, 297, 394 |
| EagI | CGGCCG | 1 cut(s) | 59 |
| Eam1104I | CTCTTC | 4 cut(s) | 237, 564, 827, 1047 |
| EarI | CTCTTC | 4 cut(s) | 237, 564, 827, 1047 |
| EciI | GGCGGA | 3 cut(s) | 220, 407, 778 |
| EclXI | CGGCCG | 1 cut(s) | 59 |
| Eco24I | GRGCYC | 3 cut(s) | 89, 673, 1883 |
| Eco31I | GGTCTC | 1 cut(s) | 335 |
| Eco32I | GATATC | 2 cut(s) | 1318, 1827 |
| Eco52I | CGGCCG | 1 cut(s) | 59 |
| Eco57I | CTGAAG | 4 cut(s) | 32, 468, 1023, 1452 |
| Eco88I | CYCGRG | 4 cut(s) | 81, 88, 143, 666 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 227 |
| EcoRII | CCWGG | 2 cut(s) | 299, 472 |
| EcoRV | GATATC | 2 cut(s) | 1318, 1827 |
| EcoT38I | GRGCYC | 3 cut(s) | 89, 673, 1883 |
| Esp3I | CGTCTC | 2 cut(s) | 140, 349 |
| FaeI | CATG | 8 cut(s) | 295, 526, 742, 762, 779, 916, 1406, 2039 |
| FatI | CATG | 8 cut(s) | 291, 522, 738, 758, 775, 912, 1402, 2035 |
| FauI | CCCGC | 2 cut(s) | 102, 353 |
| FauNDI | CATATG | 1 cut(s) | 1480 |
| Fnu4HI | GCNGC | 7 cut(s) | 59, 62, 119, 312, 371, 1257, 1260 |
| FokI | GGATG | 2 cut(s) | 1533, 1940 |
| FriOI | GRGCYC | 3 cut(s) | 89, 673, 1883 |
| Fsp4HI | GCNGC | 7 cut(s) | 59, 62, 119, 312, 371, 1257, 1260 |
| FspBI | CTAG | 3 cut(s) | 374, 1398, 2056 |
| FspI | TGCGCA | 2 cut(s) | 503, 1968 |
| GlaI | GCGC | 3 cut(s) | 349, 503, 1968 |
| GluI | GCNGC | 7 cut(s) | 59, 62, 119, 312, 371, 1257, 1260 |
| GsaI | CCCAGC | 3 cut(s) | 15, 69, 370 |
| GsuI | CTGGAG | 1 cut(s) | 343 |
| HaeIII | GGCC | 6 cut(s) | 61, 113, 142, 299, 396, 1755 |
| HgaI | GACGC | 4 cut(s) | 157, 606, 1130, 2021 |
| HhaI | GCGC | 3 cut(s) | 350, 504, 1969 |
| Hin1I | GRCGYC | 2 cut(s) | 149, 1278 |
| Hin1II | CATG | 8 cut(s) | 295, 526, 742, 762, 779, 916, 1406, 2039 |
| Hin6I | GCGC | 3 cut(s) | 348, 502, 1967 |
| HinP1I | GCGC | 3 cut(s) | 348, 502, 1967 |
| HincII | GTYRAC | 1 cut(s) | 1120 |
| HindII | GTYRAC | 1 cut(s) | 1120 |
| HindIII | AAGCTT | 2 cut(s) | 599, 1163 |
| HphI | GGTGA | 6 cut(s) | 1361, 1499, 1508, 1557, 1592, 1902 |
| Hpy166II | GTNNAC | 3 cut(s) | 1120, 1267, 1910 |
| Hpy188I | TCNGA | 8 cut(s) | 43, 448, 568, 652, 843, 1040, 1155, 1888 |
| Hpy8I | GTNNAC | 3 cut(s) | 1120, 1267, 1910 |
| Hpy99I | CGWCG | 1 cut(s) | 1637 |
| HpyCH4III | ACNGT | 8 cut(s) | 333, 1377, 1391, 1423, 1531, 1805, 1979, 2015 |
| HpyCH4IV | ACGT | 3 cut(s) | 1047, 1099, 1278 |
| HpyCH4V | TGCA | 8 cut(s) | 533, 758, 791, 902, 916, 1072, 1478, 1953 |
| HpyF3I | CTNAG | 5 cut(s) | 891, 978, 1037, 1080, 1696 |
| HpySE526I | ACGT | 3 cut(s) | 1047, 1099, 1278 |
| Hsp92I | GRCGYC | 2 cut(s) | 149, 1278 |
| Hsp92II | CATG | 8 cut(s) | 295, 526, 742, 762, 779, 916, 1406, 2039 |
| HspAI | GCGC | 3 cut(s) | 348, 502, 1967 |
| Kpn2I | TCCGGA | 1 cut(s) | 1849 |
| KroI | GCCGGC | 2 cut(s) | 138, 392 |
| KroNI | GCCGGC | 2 cut(s) | 140, 394 |
| Kzo9I | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| LmnI | GCTCC | 6 cut(s) | 55, 135, 254, 404, 682, 765 |
| Lsp1109I | GCAGC | 4 cut(s) | 105, 382, 1243, 1246 |
| LweI | GCATC | 3 cut(s) | 379, 877, 1962 |
| MaeI | CTAG | 3 cut(s) | 374, 1398, 2056 |
| MaeII | ACGT | 3 cut(s) | 1047, 1099, 1278 |
| MaeIII | GTNAC | 1 cut(s) | 1496 |
| MalI | GATC | 9 cut(s) | 45, 170, 546, 1176, 1460, 1548, 1750, 1854, 2054 |
| MbiI | CCGCTC | 1 cut(s) | 58 |
| MboI | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| MfeI | CAATTG | 1 cut(s) | 1473 |
| MflI | RGATCY | 6 cut(s) | 43, 544, 1174, 1458, 1748, 2052 |
| MhlI | GDGCHC | 7 cut(s) | 89, 291, 367, 409, 673, 1582, 1883 |
| MlyI | GAGTC | 6 cut(s) | 32, 312, 844, 1435, 1547, 1910 |
| MmeI | TCCRAC | 3 cut(s) | 537, 672, 1989 |
| MroI | TCCGGA | 1 cut(s) | 1849 |
| MroNI | GCCGGC | 2 cut(s) | 138, 392 |
| MroXI | GAANNNNTTC | 2 cut(s) | 494, 1101 |
| MseI | TTAA | 6 cut(s) | 557, 873, 950, 1016, 1341, 2043 |
| MspR9I | CCNGG | 9 cut(s) | 82, 83, 100, 115, 127, 301, 474, 673, 824 |
| MunI | CAATTG | 1 cut(s) | 1473 |
| MvaI | CCWGG | 2 cut(s) | 301, 474 |
| MvnI | CGCG | 1 cut(s) | 348 |
| NaeI | GCCGGC | 2 cut(s) | 140, 394 |
| NciI | CCSGG | 7 cut(s) | 82, 83, 100, 115, 127, 673, 824 |
| NdeI | CATATG | 1 cut(s) | 1480 |
| NdeII | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| NgoMIV | GCCGGC | 2 cut(s) | 138, 392 |
| NlaIII | CATG | 8 cut(s) | 295, 526, 742, 762, 779, 916, 1406, 2039 |
| NlaIV | GGNNCC | 6 cut(s) | 137, 288, 478, 546, 1460, 1630 |
| NmeAIII | GCCGAG | 1 cut(s) | 376 |
| NmuCI | GTSAC | 1 cut(s) | 1496 |
| NotI | GCGGCCGC | 1 cut(s) | 59 |
| NsbI | TGCGCA | 2 cut(s) | 503, 1968 |
| NspI | RCATGY | 1 cut(s) | 916 |
| PaeR7I | CTCGAG | 1 cut(s) | 666 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 177 |
| PdiI | GCCGGC | 2 cut(s) | 140, 394 |
| PdmI | GAANNNNTTC | 2 cut(s) | 494, 1101 |
| PfeI | GAWTC | 7 cut(s) | 495, 647, 676, 1025, 1443, 1597, 1924 |
| PkrI | GCNGC | 7 cut(s) | 60, 63, 120, 313, 372, 1258, 1261 |
| PleI | GAGTC | 6 cut(s) | 32, 312, 843, 1434, 1547, 1910 |
| PpsI | GAGTC | 6 cut(s) | 32, 312, 843, 1434, 1547, 1910 |
| PshBI | ATTAAT | 1 cut(s) | 950 |
| Psp6I | CCWGG | 2 cut(s) | 299, 472 |
| PspFI | CCCAGC | 3 cut(s) | 11, 65, 366 |
| PspGI | CCWGG | 2 cut(s) | 299, 472 |
| PspN4I | GGNNCC | 6 cut(s) | 137, 288, 478, 546, 1460, 1630 |
| PspPI | GGNCC | 3 cut(s) | 111, 141, 1754 |
| PspXI | VCTCGAGB | 1 cut(s) | 666 |
| PsuI | RGATCY | 6 cut(s) | 43, 544, 1174, 1458, 1748, 2052 |
| RsaI | GTAC | 3 cut(s) | 576, 642, 1420 |
| RsaNI | GTAC | 3 cut(s) | 575, 641, 1419 |
| SaqAI | TTAA | 6 cut(s) | 557, 873, 950, 1016, 1341, 2043 |
| SatI | GCNGC | 7 cut(s) | 59, 62, 119, 312, 371, 1257, 1260 |
| Sau3AI | GATC | 9 cut(s) | 43, 168, 544, 1174, 1458, 1546, 1748, 1852, 2052 |
| Sau96I | GGNCC | 3 cut(s) | 111, 141, 1754 |
| SchI | GAGTC | 6 cut(s) | 32, 312, 844, 1435, 1547, 1910 |
| ScrFI | CCNGG | 9 cut(s) | 82, 83, 100, 115, 127, 301, 474, 673, 824 |
| SduI | GDGCHC | 7 cut(s) | 89, 291, 367, 409, 673, 1582, 1883 |
| SfaNI | GCATC | 3 cut(s) | 379, 877, 1962 |
| SfcI | CTRYAG | 1 cut(s) | 329 |
| Sfr274I | CTCGAG | 1 cut(s) | 666 |
| SlaI | CTCGAG | 1 cut(s) | 666 |
| SmaI | CCCGGG | 1 cut(s) | 83 |
| SmlI | CTYRAG | 9 cut(s) | 104, 158, 484, 666, 686, 730, 1178, 1541, 1555 |
| SmoI | CTYRAG | 9 cut(s) | 104, 158, 484, 666, 686, 730, 1178, 1541, 1555 |
| SsiI | CCGC | 8 cut(s) | 58, 62, 109, 205, 312, 346, 418, 763 |
| SspMI | CTAG | 3 cut(s) | 374, 1398, 2056 |
| StyD4I | CCNGG | 9 cut(s) | 80, 81, 98, 113, 125, 299, 472, 671, 822 |
| TaaI | ACNGT | 8 cut(s) | 333, 1377, 1391, 1423, 1531, 1805, 1979, 2015 |
| TaiI | ACGT | 3 cut(s) | 1050, 1102, 1281 |
| TaqI | TCGA | 8 cut(s) | 171, 667, 720, 798, 1246, 1446, 1715, 1855 |
| TaqII | GACCGA | 1 cut(s) | 1576 |
| TatI | WGTACW | 1 cut(s) | 640 |
| TauI | GCSGC | 3 cut(s) | 61, 64, 314 |
| TfiI | GAWTC | 7 cut(s) | 495, 647, 676, 1025, 1443, 1597, 1924 |
| Tru1I | TTAA | 6 cut(s) | 557, 873, 950, 1016, 1341, 2043 |
| Tru9I | TTAA | 6 cut(s) | 557, 873, 950, 1016, 1341, 2043 |
| TscAI | CASTG | 5 cut(s) | 636, 1382, 1690, 1704, 1907 |
| TseFI | GTSAC | 1 cut(s) | 1496 |
| TseI | GCWGC | 4 cut(s) | 118, 370, 1256, 1259 |
| Tsp45I | GTSAC | 1 cut(s) | 1496 |
| TspGWI | ACGGA | 3 cut(s) | 148, 373, 1455 |
| TspMI | CCCGGG | 1 cut(s) | 81 |
| TspRI | CASTG | 5 cut(s) | 636, 1382, 1690, 1704, 1907 |
| VspI | ATTAAT | 1 cut(s) | 950 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 227 |
| XapI | RAATTY | 2 cut(s) | 783, 1413 |
| XceI | RCATGY | 1 cut(s) | 916 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 520 |
| XhoI | CTCGAG | 1 cut(s) | 666 |
| XmaI | CCCGGG | 1 cut(s) | 81 |
| XmnI | GAANNNNTTC | 2 cut(s) | 494, 1101 |
| XspI | CTAG | 3 cut(s) | 374, 1398, 2056 |
| ZraI | GACGTC | 1 cut(s) | 1279 |