Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009527

Physical Location & Seq

Genomic Coordinates Forward (+)

58296988 .. 58301141

Gene Structure 4154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGAAGAAGCCCAGCAAGCCGACATTCCCACTACCGGACTCGGATCTTCAGCCGGAGCGGCCGCCCAGCAGGAGGAAAGCCCGGGGCTCGGGTTTGCCCCGGCTCAAGCGGGCCGGGCTTCCCACCGGGAAGCGGAGCCGGCCCGAGACGCCTTTACTCAAGTGGAAGATCGAGGATACCGAGGAGGAGAACGGGAAGGAGAGGCGGAAAGACCATAATGACCTTGACGAGGAGGAGAGAGAGGAGGAGGGAGGAGGAGCGAGGAGGAAGGGCAAGAAGGGGAGAGAGGTGCCCATGTCGGCCAGGAAGCTCGCCGCCGGACTCTGGAGGCTACAGTTGCCGGAGACCGGCGCCGAGAGACGGAGTGCCCAGCAGCTAGGGTTTCAGCCTGATGCAGGCCATATTGGAGCACCATTTCTCCGTCAACGCAATAGCAAAGGATTTGCTTCTGAAGCAAAGGATAATTTACAAAGCCCTGGTTCCACCTCAAGGAATGGATTCTTGCGCAAGTTATCCAACTCTGTCATGGAAGGTGCAACAAAATGGGATCCTGTCTGCTTAAAATCATCAGAAGAGGTACGCCAGATTTACAGCCAAATGAAGCTTCTCGACCAACAAGTGTCTGCTGTATCAGTGGTAAATGTACTTGAATCTGAATTAGAGCAGGCTCGAGCCCGCATTCAGGAGCTTGAGTTGGAGCGGCGTTCCTCAAAAAAGAAACTCGAACACTTCTTGAGGAACATGAATGAGGAAAAGGTTGCATGGCGGAGCAGAGAGCATGAGAAAATTCGTGCATTTATCGATGACATCAAGGTTGAATTGAACCGGGAAAGGAAGAGTCGTCAGAGAACTGAAATACTCAATTCCAAATTGGTTAATGAGCTTGCTGATGCTAAGTTATCTGCAAAGCGATACATGCAGGACTATGAAAAAGAAAGAAAGGCAAGAGAATTAATTGAGGAAGTATGTGATGAGCTTGCTAAGGAAATTGGAGAAGACAAGGCTGAAGTTGAAGCATTAAAGAGAGAATCTATGAAACTCAGAGATGACGTGGAAGAGGAAAGGAAGATGTTGCAGATGGCTGAGGTCTGGCGTGAGGAACGTGTTCAAATGAAGCTGGTTGACGCAAAGGTGGCAGTTGAGGAGAAGTATTCTCTGATGAACAAGCTTGTGGCAGATCTTGAGAATTTTTTGAAGTCAAGAAGTTCAACCCCAGATGTGAAGGAAATGAGAGAAGGAGAGTTTCTTCGACAGGCTGCTGCTGCTGTAAACATTCAAGACGTCAAGGACTTTTCTTATGAACCCCCCAATCCTGATGATATCTTTTCCGTGTTTGAAGAAGTTAATTTTGGTGAGCCTAATGAGAGGGAGATTGAACAGTGTGTTGCTTACAGTCCTGCTAGTCATGCTTCCAAAATTCGTACTGTGAGTCCTGAAGCTAATGGAATCGATAAAAACCGGATCCAGAGGCACGCAATTGCATATGTTGGTGAGAATGGTGACATAGAAGAAGATGAGAGTGGATGGGAAACTGTGAGCCATCCTGAGGATCAGGACTCAAGCTATTCACCAGATGGGAGTGCCCCATCGGTCAATAAGAATCACCGAGAGAGTAACGTCACAGATAGTGGAACTGAATGGGAAGAAGAAAATGATGGGGAGGAAACACCAATTACCGAAATCAGTGAGGTTTGCTCGGTGCCAATAAAGCAGCCGAAGAAGGTATCAAGTATAGCAAGGCTTTGGAGATCTGGCCCAAATAATGAAGACAACTACAAGATTATCTCGGTAGAAGGAATAAACGGTAGGCTCTCAAATGGAAGGATATCCAAAGGGGATATTTTGTCTCCGGATCGAGGTTCAGGTAAAGGTGGTTTTAGCCCCTCTGATGTGGGGCCGTGGAGTTCACCGGACTCTGGGAATCATCATATTCGGGGTATGAAAGGCTGCATCCCTCTTGGTGCGCAGAAGAACAGTTTGAAGGCAAGACTTTTGGAGGCAAGGTTGGACAGTCAAAAAGTTCAACTGCGTCATGTGCTTAAACAGAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

684

Amino Acids

77.55

Weight (kDa)

6.39

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50660
fragaria_vesca	FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650
malus_domestica	MD03G1201300.v1.1 MD11G1218700.v1.1
prunus_persica	Prupe.4G212500_v2.0.a1
pyrus_communis	pycom03g15260 pycom11g19260
rosa_chinensis	RchiOBHm_Chr5g0039421
rosa_laevigata	RLG00000033913
rosa_multiflora	Rmu_co8501983.1_g000001
rosa_roxburghii	Rroxscaffold_1G00040560 Rroxscaffold_1G00041790
rosa_rugosa	Rorug05G0179100
rosa_samantha	Rh5AG265700 Rh5BG270300 Rh5CG303300 Rh5DG278300
rosa_wichuraiana	Rw5G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1284
Acc16I	TGCGCA	2 cut(s)	506, 1965
AccB1I	GGYRCC	3 cut(s)	289, 350, 1699
AccBSI	CCGCTC	2 cut(s)	58, 700
AccIII	TCCGGA	1 cut(s)	1849
AciI	CCGC	9 cut(s)	58, 62, 109, 133, 205, 315, 676, 700, 766
AclWI	GGATC	7 cut(s)	51, 542, 555, 1456, 1469, 1557, 1860
AcoI	YGGCCR	2 cut(s)	59, 300
AcsI	RAATTY	3 cut(s)	786, 1186, 1416
AcuI	CTGAAG	4 cut(s)	32, 471, 1026, 1455
AcyI	GRCGYC	3 cut(s)	149, 351, 1281
AfaI	GTAC	3 cut(s)	579, 645, 1423
AflIII	ACRYGT	1 cut(s)	1102
AjiI	CACGTC	1 cut(s)	1051
AjnI	CCWGG	2 cut(s)	302, 475
AjuI	GAANNNNNNNTTGG	4 cut(s)	588, 620, 1332, 1364
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	4 cut(s)	140, 338, 352, 1851
AlwI	GGATC	7 cut(s)	51, 542, 555, 1456, 1469, 1557, 1860
Ama87I	CYCGRG	4 cut(s)	81, 88, 143, 669
Aor13HI	TCCGGA	1 cut(s)	1849
AoxI	GGCC	7 cut(s)	59, 111, 140, 300, 397, 1753, 1895
ApeKI	GCWGC	6 cut(s)	373, 1256, 1259, 1262, 1711, 1947
ApoI	RAATTY	3 cut(s)	786, 1186, 1416
AseI	ATTAAT	1 cut(s)	953
Asp700I	GAANNNNTTC	2 cut(s)	497, 1104
AspLEI	GCGC	3 cut(s)	353, 507, 1966
AspS9I	GGNCC	4 cut(s)	111, 141, 1754, 1895
AsuC2I	CCSGG	6 cut(s)	82, 83, 100, 115, 127, 827
AsuHPI	GGTGA	6 cut(s)	1364, 1502, 1511, 1560, 1595, 1899
AvaI	CYCGRG	4 cut(s)	81, 88, 143, 669
AxyI	CCTNAGG	1 cut(s)	1545
BaeGI	GKGCMC	3 cut(s)	294, 370, 1585
BamHI	GGATCC	2 cut(s)	547, 1461
BanI	GGYRCC	3 cut(s)	289, 350, 1699
BanII	GRGCYC	2 cut(s)	89, 676
BbsI	GAAGAC	2 cut(s)	1002, 1773
Bbv12I	GWGCWC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	1083
BbvI	GCAGC	6 cut(s)	385, 1243, 1246, 1249, 1723, 1934
BccI	CCATC	6 cut(s)	1072, 1518, 1548, 1568, 1594, 1649
BceAI	ACGGC	1 cut(s)	1882
BciT130I	CCWGG	2 cut(s)	304, 477
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	6 cut(s)	82, 83, 100, 115, 127, 827
BcoDI	GTCTC	4 cut(s)	140, 338, 352, 1851
BfaI	CTAG	3 cut(s)	377, 1401, 2053
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	58
BglII	AGATCT	3 cut(s)	1177, 1748, 2049
Bme1390I	CCNGG	8 cut(s)	82, 83, 100, 115, 127, 304, 477, 827
BmeT110I	CYCGRG	4 cut(s)	81, 88, 143, 669
BmgBI	CACGTC	1 cut(s)	1051
BmgT120I	GGNCC	4 cut(s)	111, 141, 1754, 1895
BmiI	GGNNCC	8 cut(s)	137, 291, 352, 481, 549, 1463, 1701, 1896
BmrFI	CCNGG	8 cut(s)	82, 83, 100, 115, 127, 304, 477, 827
BmsI	GCATC	3 cut(s)	382, 880, 1959
BpiI	GAAGAC	2 cut(s)	1002, 1773
BplI	GAGNNNNNCTC	2 cut(s)	1679, 1711
BpmI	CTGGAG	1 cut(s)	346
Bpu10I	CCTNAGC	2 cut(s)	981, 1083
BpuEI	CTTGAG	7 cut(s)	89, 143, 472, 710, 754, 1202, 1543
BpuMI	CCSGG	6 cut(s)	82, 83, 100, 115, 127, 827
Bsa29I	ATCGAT	2 cut(s)	801, 1449
BsaHI	GRCGYC	3 cut(s)	149, 351, 1281
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	6 cut(s)	81, 82, 98, 180, 475, 1898
BsaWI	WCCGGW	4 cut(s)	34, 1458, 1849, 1909
BsaXI	ACNNNNNCTCC	6 cut(s)	402, 432, 677, 707, 1988, 2018
Bse118I	RCCGGY	2 cut(s)	138, 347
Bse21I	CCTNAGG	1 cut(s)	1545
BseAI	TCCGGA	1 cut(s)	1849
BseBI	CCWGG	2 cut(s)	304, 477
BseCI	ATCGAT	2 cut(s)	801, 1449
BseDI	CCNNGG	6 cut(s)	81, 82, 98, 180, 475, 1898
BseGI	GGATG	3 cut(s)	1529, 1540, 1950
BseMII	CTCAG	3 cut(s)	1054, 1074, 1536
BseSI	GKGCMC	3 cut(s)	294, 370, 1585
BseX3I	CGGCCG	1 cut(s)	59
BseXI	GCAGC	6 cut(s)	385, 1243, 1246, 1249, 1723, 1934
BseYI	CCCAGC	3 cut(s)	11, 65, 369
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	7 cut(s)	61, 113, 142, 302, 399, 1755, 1897
BshNI	GGYRCC	3 cut(s)	289, 350, 1699
BshVI	ATCGAT	2 cut(s)	801, 1449
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	4 cut(s)	81, 88, 143, 669
BsmAI	GTCTC	4 cut(s)	140, 338, 352, 1851
BsmBI	CGTCTC	2 cut(s)	140, 352
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	7 cut(s)	61, 113, 142, 302, 399, 1755, 1897
Bso31I	GGTCTC	1 cut(s)	338
BsoBI	CYCGRG	4 cut(s)	81, 88, 143, 669
Bsp1286I	GDGCHC	6 cut(s)	89, 294, 370, 412, 676, 1585
Bsp13I	TCCGGA	1 cut(s)	1849
Bsp143I	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
BspACI	CCGC	9 cut(s)	58, 62, 109, 133, 205, 315, 676, 700, 766
BspANI	GGCC	7 cut(s)	61, 113, 142, 302, 399, 1755, 1897
BspCNI	CTCAG	3 cut(s)	1053, 1075, 1537
BspDI	ATCGAT	2 cut(s)	801, 1449
BspEI	TCCGGA	1 cut(s)	1849
BspLI	GGNNCC	8 cut(s)	137, 291, 352, 481, 549, 1463, 1701, 1896
BspPI	GGATC	7 cut(s)	51, 542, 555, 1456, 1469, 1557, 1860
BspT107I	GGYRCC	3 cut(s)	289, 350, 1699
BspTNI	GGTCTC	1 cut(s)	338
BsrBI	CCGCTC	2 cut(s)	58, 700
BsrFI	RCCGGY	2 cut(s)	138, 347
BssAI	RCCGGY	2 cut(s)	138, 347
BssECI	CCNNGG	6 cut(s)	81, 82, 98, 180, 475, 1898
BssMI	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
BssNI	GRCGYC	3 cut(s)	149, 351, 1281
Bst2UI	CCWGG	2 cut(s)	304, 477
Bst4CI	ACNGT	8 cut(s)	336, 1380, 1394, 1426, 1534, 1805, 1976, 2012
Bst6I	CTCTTC	3 cut(s)	567, 830, 1050
BstACI	GRCGYC	3 cut(s)	149, 351, 1281
BstDEI	CTNAG	5 cut(s)	894, 981, 1040, 1083, 1545
BstDSI	CCRYGG	1 cut(s)	1898
BstENI	CCTNNNNNAGG	2 cut(s)	227, 393
BstF5I	GGATG	3 cut(s)	1529, 1540, 1950
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	353, 507, 1966
BstKTI	GATC	9 cut(s)	46, 171, 550, 1180, 1464, 1552, 1751, 1855, 2052
BstMAI	GTCTC	4 cut(s)	140, 338, 352, 1851
BstMBI	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
BstMCI	CGRYCG	1 cut(s)	62
BstNI	CCWGG	2 cut(s)	304, 477
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	8 cut(s)	80, 81, 98, 113, 125, 302, 475, 825
BstSFI	CTRYAG	1 cut(s)	332
BstSLI	GKGCMC	3 cut(s)	294, 370, 1585
BstV1I	GCAGC	6 cut(s)	385, 1243, 1246, 1249, 1723, 1934
BstV2I	GAAGAC	2 cut(s)	1002, 1773
BstX2I	RGATCY	6 cut(s)	43, 547, 1177, 1461, 1748, 2049
BstYI	RGATCY	6 cut(s)	43, 547, 1177, 1461, 1748, 2049
BstZI	CGGCCG	1 cut(s)	59
Bsu15I	ATCGAT	2 cut(s)	801, 1449
Bsu36I	CCTNAGG	1 cut(s)	1545
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	7 cut(s)	61, 113, 142, 302, 399, 1755, 1897
BsuTUI	ATCGAT	2 cut(s)	801, 1449
BtgI	CCRYGG	1 cut(s)	1898
BtrI	CACGTC	1 cut(s)	1051
BtsCI	GGATG	3 cut(s)	1529, 1540, 1950
BtsIMutI	CAGTG	3 cut(s)	639, 1385, 1690
CciNI	GCGGCCGC	1 cut(s)	59
CfoI	GCGC	3 cut(s)	353, 507, 1966
Cfr10I	RCCGGY	2 cut(s)	138, 347
Cfr13I	GGNCC	4 cut(s)	111, 141, 1754, 1895
Cfr9I	CCCGGG	1 cut(s)	81
ClaI	ATCGAT	2 cut(s)	801, 1449
CseI	GACGC	3 cut(s)	157, 1133, 2018
Csp6I	GTAC	3 cut(s)	578, 644, 1422
CviAII	CATG	8 cut(s)	295, 526, 742, 762, 779, 916, 1406, 2033
CviQI	GTAC	3 cut(s)	578, 644, 1422
DdeI	CTNAG	5 cut(s)	894, 981, 1040, 1083, 1545
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	9 cut(s)	45, 170, 549, 1179, 1463, 1551, 1750, 1854, 2051
DpnII	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
EaeI	YGGCCR	2 cut(s)	59, 300
EagI	CGGCCG	1 cut(s)	59
Eam1104I	CTCTTC	3 cut(s)	567, 830, 1050
EarI	CTCTTC	3 cut(s)	567, 830, 1050
EciI	GGCGGA	2 cut(s)	220, 781
EclXI	CGGCCG	1 cut(s)	59
Eco24I	GRGCYC	2 cut(s)	89, 676
Eco31I	GGTCTC	1 cut(s)	338
Eco32I	GATATC	2 cut(s)	1321, 1827
Eco52I	CGGCCG	1 cut(s)	59
Eco57I	CTGAAG	4 cut(s)	32, 471, 1026, 1455
Eco81I	CCTNAGG	1 cut(s)	1545
Eco88I	CYCGRG	4 cut(s)	81, 88, 143, 669
EcoNI	CCTNNNNNAGG	2 cut(s)	227, 393
EcoRII	CCWGG	2 cut(s)	302, 475
EcoRV	GATATC	2 cut(s)	1321, 1827
EcoT38I	GRGCYC	2 cut(s)	89, 676
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
Esp3I	CGTCTC	2 cut(s)	140, 352
FaeI	CATG	8 cut(s)	298, 529, 745, 765, 782, 919, 1409, 2036
FatI	CATG	8 cut(s)	294, 525, 741, 761, 778, 915, 1405, 2032
FauI	CCCGC	2 cut(s)	102, 683
FauNDI	CATATG	1 cut(s)	1483
FokI	GGATG	3 cut(s)	1527, 1536, 1937
FriOI	GRGCYC	2 cut(s)	89, 676
FspBI	CTAG	3 cut(s)	377, 1401, 2053
FspI	TGCGCA	2 cut(s)	506, 1965
GlaI	GCGC	3 cut(s)	352, 506, 1965
GsaI	CCCAGC	3 cut(s)	15, 69, 373
GsuI	CTGGAG	1 cut(s)	346
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	7 cut(s)	61, 113, 142, 302, 399, 1755, 1897
HgaI	GACGC	3 cut(s)	157, 1133, 2018
HhaI	GCGC	3 cut(s)	353, 507, 1966
Hin1I	GRCGYC	3 cut(s)	149, 351, 1281
Hin1II	CATG	8 cut(s)	298, 529, 745, 765, 782, 919, 1409, 2036
Hin6I	GCGC	3 cut(s)	351, 505, 1964
HinP1I	GCGC	3 cut(s)	351, 505, 1964
HincII	GTYRAC	2 cut(s)	425, 1123
HindII	GTYRAC	2 cut(s)	425, 1123
HindIII	AAGCTT	2 cut(s)	602, 1166
HphI	GGTGA	6 cut(s)	1364, 1502, 1511, 1560, 1595, 1899
Hpy166II	GTNNAC	4 cut(s)	425, 1123, 1270, 1907
Hpy188I	TCNGA	8 cut(s)	43, 451, 571, 655, 846, 1043, 1158, 1888
Hpy8I	GTNNAC	4 cut(s)	425, 1123, 1270, 1907
HpyCH4III	ACNGT	8 cut(s)	336, 1380, 1394, 1426, 1534, 1805, 1976, 2012
HpyCH4IV	ACGT	4 cut(s)	1050, 1102, 1281, 1617
HpyCH4V	TGCA	9 cut(s)	395, 536, 761, 794, 905, 919, 1075, 1481, 1950
HpyF3I	CTNAG	5 cut(s)	894, 981, 1040, 1083, 1545
HpySE526I	ACGT	4 cut(s)	1050, 1102, 1281, 1617
Hsp92I	GRCGYC	3 cut(s)	149, 351, 1281
Hsp92II	CATG	8 cut(s)	298, 529, 745, 765, 782, 919, 1409, 2036
HspAI	GCGC	3 cut(s)	351, 505, 1964
KasI	GGCGCC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	1849
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
Kzo9I	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
LmnI	GCTCC	7 cut(s)	55, 135, 257, 407, 685, 697, 768
Lsp1109I	GCAGC	6 cut(s)	385, 1243, 1246, 1249, 1723, 1934
LweI	GCATC	3 cut(s)	382, 880, 1959
MaeI	CTAG	3 cut(s)	377, 1401, 2053
MaeII	ACGT	4 cut(s)	1050, 1102, 1281, 1617
MaeIII	GTNAC	3 cut(s)	1499, 1613, 1618
MalI	GATC	9 cut(s)	45, 170, 549, 1179, 1463, 1551, 1750, 1854, 2051
MbiI	CCGCTC	2 cut(s)	58, 700
MboI	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	6 cut(s)	43, 547, 1177, 1461, 1748, 2049
MhlI	GDGCHC	6 cut(s)	89, 294, 370, 412, 676, 1585
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	6 cut(s)	32, 315, 847, 1438, 1550, 1907
MmeI	TCCRAC	3 cut(s)	540, 675, 1986
MroI	TCCGGA	1 cut(s)	1849
MroNI	GCCGGC	1 cut(s)	138
MroXI	GAANNNNTTC	2 cut(s)	497, 1104
MseI	TTAA	6 cut(s)	560, 876, 953, 1019, 1344, 2040
MspR9I	CCNGG	8 cut(s)	82, 83, 100, 115, 127, 304, 477, 827
MunI	CAATTG	1 cut(s)	1476
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	304, 477
NaeI	GCCGGC	1 cut(s)	140
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	6 cut(s)	82, 83, 100, 115, 127, 827
NdeI	CATATG	1 cut(s)	1483
NdeII	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
NgoMIV	GCCGGC	1 cut(s)	138
NlaIII	CATG	8 cut(s)	298, 529, 745, 765, 782, 919, 1409, 2036
NlaIV	GGNNCC	8 cut(s)	137, 291, 352, 481, 549, 1463, 1701, 1896
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	1499, 1618
NotI	GCGGCCGC	1 cut(s)	59
NsbI	TGCGCA	2 cut(s)	506, 1965
NspI	RCATGY	1 cut(s)	919
PaeR7I	CTCGAG	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	678
PdiI	GCCGGC	1 cut(s)	140
PdmI	GAANNNNTTC	2 cut(s)	497, 1104
PfeI	GAWTC	6 cut(s)	498, 650, 1028, 1446, 1600, 1921
PleI	GAGTC	6 cut(s)	32, 315, 846, 1437, 1550, 1907
PluTI	GGCGCC	1 cut(s)	354
PpsI	GAGTC	6 cut(s)	32, 315, 846, 1437, 1550, 1907
PshBI	ATTAAT	1 cut(s)	953
Psp6I	CCWGG	2 cut(s)	302, 475
PspFI	CCCAGC	3 cut(s)	11, 65, 369
PspGI	CCWGG	2 cut(s)	302, 475
PspN4I	GGNNCC	8 cut(s)	137, 291, 352, 481, 549, 1463, 1701, 1896
PspPI	GGNCC	4 cut(s)	111, 141, 1754, 1895
PspXI	VCTCGAGB	1 cut(s)	669
PsuI	RGATCY	6 cut(s)	43, 547, 1177, 1461, 1748, 2049
RsaI	GTAC	3 cut(s)	579, 645, 1423
RsaNI	GTAC	3 cut(s)	578, 644, 1422
SaqAI	TTAA	6 cut(s)	560, 876, 953, 1019, 1344, 2040
Sau3AI	GATC	9 cut(s)	43, 168, 547, 1177, 1461, 1549, 1748, 1852, 2049
Sau96I	GGNCC	4 cut(s)	111, 141, 1754, 1895
SchI	GAGTC	6 cut(s)	32, 315, 847, 1438, 1550, 1907
ScrFI	CCNGG	8 cut(s)	82, 83, 100, 115, 127, 304, 477, 827
SduI	GDGCHC	6 cut(s)	89, 294, 370, 412, 676, 1585
SfaNI	GCATC	3 cut(s)	382, 880, 1959
SfcI	CTRYAG	1 cut(s)	332
SfoI	GGCGCC	1 cut(s)	352
Sfr274I	CTCGAG	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	669
SmaI	CCCGGG	1 cut(s)	83
SmlI	CTYRAG	8 cut(s)	104, 158, 487, 669, 689, 733, 1181, 1558
SmoI	CTYRAG	8 cut(s)	104, 158, 487, 669, 689, 733, 1181, 1558
SsiI	CCGC	9 cut(s)	58, 62, 109, 133, 205, 315, 676, 700, 766
SspDI	GGCGCC	1 cut(s)	350
SspMI	CTAG	3 cut(s)	377, 1401, 2053
StyD4I	CCNGG	8 cut(s)	80, 81, 98, 113, 125, 302, 475, 825
TaaI	ACNGT	8 cut(s)	336, 1380, 1394, 1426, 1534, 1805, 1976, 2012
TaiI	ACGT	4 cut(s)	1053, 1105, 1284, 1620
TaqI	TCGA	8 cut(s)	171, 609, 670, 723, 801, 1249, 1449, 1855
TaqII	GACCGA	1 cut(s)	1579
TatI	WGTACW	1 cut(s)	643
TauI	GCSGC	4 cut(s)	61, 64, 317, 703
TfiI	GAWTC	6 cut(s)	498, 650, 1028, 1446, 1600, 1921
Tru1I	TTAA	6 cut(s)	560, 876, 953, 1019, 1344, 2040
Tru9I	TTAA	6 cut(s)	560, 876, 953, 1019, 1344, 2040
TscAI	CASTG	3 cut(s)	639, 1385, 1690
TseFI	GTSAC	2 cut(s)	1499, 1618
TseI	GCWGC	6 cut(s)	373, 1256, 1259, 1262, 1711, 1947
Tsp45I	GTSAC	2 cut(s)	1499, 1618
TspGWI	ACGGA	3 cut(s)	376, 410, 1318
TspMI	CCCGGG	1 cut(s)	81
TspRI	CASTG	3 cut(s)	639, 1385, 1690
VspI	ATTAAT	1 cut(s)	953
XagI	CCTNNNNNAGG	2 cut(s)	227, 393
XapI	RAATTY	3 cut(s)	786, 1186, 1416
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	669
XmaI	CCCGGG	1 cut(s)	81
XmnI	GAANNNNTTC	2 cut(s)	497, 1104
XspI	CTAG	3 cut(s)	377, 1401, 2053
ZraI	GACGTC	1 cut(s)	1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.