Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009527

Physical Location & Seq

Genomic Coordinates Forward (+)

33395262 .. 33399762

Gene Structure 4501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG303300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGTGTTCGATGAAGAAGCCCAGCAAGCCGACATTCCCACTACCGGACTCGGATCTTCAGCCGGAGCGGCCGCCCAGCAGGAGGAAAGCCCGGGGCTCGGGTTTTCCCCGGCTCAAGCGGGCCGGGCTTCCCACCGGGAAACGGAGCCGGCCCGAGACGCCTTTACTCAAGTGGAAGATCGAGGATACCGAGGAGGAGAACGGGAAGGAGAGGCGGAAAGACCAAAATGACCTTGACGAGGAGGAGAGAGAGGAGGAGGGAGGGGGAGGAGCGAGGAGGAAGGGCAAGAAGGGGAGAGAGGTGCCCATGTCGGCCAGGAAGCTCGCCGCCGGACTCTGGAGGCTACAGTTGCCGGAGACCGGCGCCGAGAGACGGAGTGCCCAGCAGCTAGGGTTTCAGCCTGATGCAGGCCATATTGGAGCGCCATTTCTCTGCCAACGCAATAGCAAAGGATTTGCTTCTGAAGCAAAGGATAATTTACAAAGCCCTGGTTCCACCTCAAGGAATGGATTCTTGCGCAAGTTATCCAACTCTGTCATGGAAGGTGCAACAAAATGGGATCCTGTCTGCTTAAAATCATCAGAAGAGGTACGCCAGATTTACAGCCAAATGAAGCTTCTTGACCAACAAGCGTCTGCTGTATCAGTGGTAAATGTACTTGAATCTGAATTAGAGCAGGCTCGAGCCCGCATTCAGGAGCTTGAGTTGGAGCGGCGTTCCTCAAAAAAGAAACTCGAACACTTCTTGAGGAACATGAATGAGGAAAAGGTTGCATGGCGGAGCAGAGAGCATGAGAAAATTCGTGCATTTATCGATGACATCAAGGTTGAATTGAACCGGGAAAGGAAGAGTCGTCAGAGAACTGAAATACTCAATTCCAAATTGGTTAATGAGCTTGCTGATGCTAAGTTATCTGCAAAGCGATACATGCAGGACTATGAAAAAGAAAGAAAGGCAAGAGAATTAATTGAGGAAGTATGTGATGAGCTTGCTAAGGAAATTGGAGAAGACAAGGCTGAAGTTGAAGCATTAAAGAGAGAATCTATGAAACTCAGAGATGACGTGGAAGAGGAAAGGAAGATGTTGCAGATGGCTGAGGTCTGGCGTGAGGAACGTGTTCAAATGAAGCTGGTTGACGCCAAGGTGGCAGTTGAGGAGAAGTATTCTCTGATGAACAAGCTTGTGGCAGATCTTGAGAATTTTTTGAAGTCAAGAAGTTCAACCCCAGATGTGAAGGAAATGAGAGAAGGAGAGTTTCTTCGACAGGTTGCTGCTGCTGTAAACATTCAAGACGTCAAGGACTTTTCTTATGAACCCCCCAATCCTGATGATATCTTTTCCGTGTTTGAAGAAGTTAATTTTGGTGAGCCTAATGAGAGGGAGATTGAACAGTGTGTTGCTTACAGTCCTGCTAGTCATGCTTCCAAAATTCGTACTGTGAGTCCTGAAGCTAATGGAATCGATAAAAACCGGATCCAGAGGCACGCAATTGCATATGTTGGTGAGAATGGTGACATAGAAGAAGATGAGAGTGGATGGGAAACTGTGAGCCATCTTGAGGATCAGGACTCAAGCTATTCACCAGACGGGAGTGCCCCATCGGTCAATAAGAATCACCGAGAGAGTAACGTCACAGATAGTGGAACCGAATGGGAAGAAGAAAATGATGGGGAGGAAACACCAATTACCGAAATCAGTGAGGTTTGCTCGGTGCCAATAAAGCAGTCGAAGAAGGTATCAAGTATAGCAAGGCTTTGGAGATCTGGCCCAAATAATGAAGACAACTACAAGTTTATCTCGGTAGAAGGAATAAACGGTAGGCTCTCAAATGGAAGGATATCCAAAGGGGATATTTTGTCTCCGGATCGAGGTTCAGGTAAAGGTGGTTTTAGCCCCTCTGATTTAGTGGGGCAGTGGAGTTCACCGGACTCTGGGAATCATCATATTCGGGGTATGAAAGGGTGCATCCCTCTTGGTGCGCAGAAGAACAGTTTGAAGGCAAGACTTTTGGAGGCAAGGTTGGACAGTCAAAAAGTTCAACTGCGTCATGTGCTTAAACAGAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

689

Amino Acids

78.09

Weight (kDa)

6.24

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50660
fragaria_vesca	FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650
malus_domestica	MD03G1201300.v1.1 MD11G1218700.v1.1
prunus_persica	Prupe.4G212500_v2.0.a1
pyrus_communis	pycom03g15260 pycom11g19260
rosa_chinensis	RchiOBHm_Chr5g0039421
rosa_laevigata	RLG00000033913
rosa_multiflora	Rmu_co8501983.1_g000001
rosa_roxburghii	Rroxscaffold_1G00040560 Rroxscaffold_1G00041790
rosa_rugosa	Rorug05G0179100
rosa_samantha	Rh5AG265700 Rh5BG270300 Rh5CG303300 Rh5DG278300
rosa_wichuraiana	Rw5G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1296
Acc16I	TGCGCA	2 cut(s)	518, 1980
AccB1I	GGYRCC	3 cut(s)	301, 362, 1711
AccBSI	CCGCTC	2 cut(s)	67, 712
AccIII	TCCGGA	1 cut(s)	1861
AciI	CCGC	8 cut(s)	67, 71, 118, 214, 327, 688, 712, 778
AclWI	GGATC	7 cut(s)	60, 554, 567, 1468, 1481, 1569, 1872
AcoI	YGGCCR	2 cut(s)	68, 312
AcsI	RAATTY	3 cut(s)	798, 1198, 1428
AcuI	CTGAAG	4 cut(s)	41, 483, 1038, 1467
AcyI	GRCGYC	4 cut(s)	158, 363, 1137, 1293
AfaI	GTAC	3 cut(s)	591, 657, 1435
AflIII	ACRYGT	1 cut(s)	1114
AjiI	CACGTC	1 cut(s)	1063
AjnI	CCWGG	2 cut(s)	314, 487
AjuI	GAANNNNNNNTTGG	4 cut(s)	600, 632, 1344, 1376
Alw26I	GTCTC	4 cut(s)	149, 350, 364, 1863
AlwI	GGATC	7 cut(s)	60, 554, 567, 1468, 1481, 1569, 1872
Ama87I	CYCGRG	4 cut(s)	90, 97, 152, 681
Aor13HI	TCCGGA	1 cut(s)	1861
AoxI	GGCC	6 cut(s)	68, 120, 149, 312, 409, 1765
ApeKI	GCWGC	3 cut(s)	385, 1271, 1274
ApoI	RAATTY	3 cut(s)	798, 1198, 1428
AseI	ATTAAT	1 cut(s)	965
Asp700I	GAANNNNTTC	2 cut(s)	509, 1116
AspLEI	GCGC	4 cut(s)	365, 424, 519, 1981
AspS9I	GGNCC	3 cut(s)	120, 150, 1766
AsuC2I	CCSGG	6 cut(s)	91, 92, 109, 124, 136, 839
AsuHPI	GGTGA	6 cut(s)	1376, 1514, 1523, 1572, 1607, 1914
AvaI	CYCGRG	4 cut(s)	90, 97, 152, 681
BaeGI	GKGCMC	3 cut(s)	306, 382, 1597
BamHI	GGATCC	2 cut(s)	559, 1473
BanI	GGYRCC	3 cut(s)	301, 362, 1711
BanII	GRGCYC	2 cut(s)	98, 688
BbsI	GAAGAC	2 cut(s)	1014, 1785
BbvCI	CCTCAGC	1 cut(s)	1095
BbvI	GCAGC	3 cut(s)	397, 1258, 1261
BccI	CCATC	5 cut(s)	1084, 1530, 1560, 1606, 1661
BciT130I	CCWGG	2 cut(s)	316, 489
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	6 cut(s)	91, 92, 109, 124, 136, 839
BcoDI	GTCTC	4 cut(s)	149, 350, 364, 1863
BfaI	CTAG	3 cut(s)	389, 1413, 2068
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	2 cut(s)	366, 425
BfuI	GTATCC	1 cut(s)	178
BglI	GCCNNNNNGGC	2 cut(s)	67, 1145
BglII	AGATCT	3 cut(s)	1189, 1760, 2064
BisI	GCNGC	7 cut(s)	68, 71, 327, 386, 713, 1272, 1275
BlsI	GCNGC	7 cut(s)	69, 72, 328, 387, 714, 1273, 1276
Bme1390I	CCNGG	8 cut(s)	91, 92, 109, 124, 136, 316, 489, 839
BmeT110I	CYCGRG	4 cut(s)	90, 97, 152, 681
BmgBI	CACGTC	1 cut(s)	1063
BmgT120I	GGNCC	3 cut(s)	120, 150, 1766
BmiI	GGNNCC	8 cut(s)	146, 303, 364, 493, 561, 1475, 1645, 1713
BmrFI	CCNGG	8 cut(s)	91, 92, 109, 124, 136, 316, 489, 839
BmsI	GCATC	3 cut(s)	394, 892, 1974
BpiI	GAAGAC	2 cut(s)	1014, 1785
BplI	GAGNNNNNCTC	2 cut(s)	1691, 1723
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	2 cut(s)	993, 1095
BpuEI	CTTGAG	8 cut(s)	98, 152, 484, 722, 766, 1214, 1555, 1577
BpuMI	CCSGG	6 cut(s)	91, 92, 109, 124, 136, 839
Bsa29I	ATCGAT	2 cut(s)	813, 1461
BsaHI	GRCGYC	4 cut(s)	158, 363, 1137, 1293
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	6 cut(s)	90, 91, 107, 189, 487, 1140
BsaWI	WCCGGW	4 cut(s)	43, 1470, 1861, 1924
BsaXI	ACNNNNNCTCC	4 cut(s)	689, 719, 2003, 2033
Bse118I	RCCGGY	2 cut(s)	147, 359
BseAI	TCCGGA	1 cut(s)	1861
BseBI	CCWGG	2 cut(s)	316, 489
BseCI	ATCGAT	2 cut(s)	813, 1461
BseDI	CCNNGG	6 cut(s)	90, 91, 107, 189, 487, 1140
BseGI	GGATG	2 cut(s)	1541, 1965
BseMII	CTCAG	2 cut(s)	1066, 1086
BseRI	GAGGAG	9 cut(s)	206, 209, 254, 257, 266, 269, 282, 289, 1169
BseSI	GKGCMC	3 cut(s)	306, 382, 1597
BseX3I	CGGCCG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	397, 1258, 1261
BseYI	CCCAGC	3 cut(s)	20, 74, 381
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	6 cut(s)	70, 122, 151, 314, 411, 1767
BshNI	GGYRCC	3 cut(s)	301, 362, 1711
BshVI	ATCGAT	2 cut(s)	813, 1461
BsiEI	CGRYCG	1 cut(s)	71
BsiHKCI	CYCGRG	4 cut(s)	90, 97, 152, 681
BsmAI	GTCTC	4 cut(s)	149, 350, 364, 1863
BsmBI	CGTCTC	2 cut(s)	149, 364
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	6 cut(s)	70, 122, 151, 314, 411, 1767
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	4 cut(s)	90, 97, 152, 681
Bsp1286I	GDGCHC	5 cut(s)	98, 306, 382, 688, 1597
Bsp13I	TCCGGA	1 cut(s)	1861
Bsp143I	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
BspACI	CCGC	8 cut(s)	67, 71, 118, 214, 327, 688, 712, 778
BspANI	GGCC	6 cut(s)	70, 122, 151, 314, 411, 1767
BspCNI	CTCAG	2 cut(s)	1065, 1087
BspDI	ATCGAT	2 cut(s)	813, 1461
BspEI	TCCGGA	1 cut(s)	1861
BspLI	GGNNCC	8 cut(s)	146, 303, 364, 493, 561, 1475, 1645, 1713
BspPI	GGATC	7 cut(s)	60, 554, 567, 1468, 1481, 1569, 1872
BspT107I	GGYRCC	3 cut(s)	301, 362, 1711
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	2 cut(s)	67, 712
BsrFI	RCCGGY	2 cut(s)	147, 359
BssAI	RCCGGY	2 cut(s)	147, 359
BssECI	CCNNGG	6 cut(s)	90, 91, 107, 189, 487, 1140
BssMI	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
BssNI	GRCGYC	4 cut(s)	158, 363, 1137, 1293
BssT1I	CCWWGG	1 cut(s)	1140
Bst2UI	CCWGG	2 cut(s)	316, 489
Bst4CI	ACNGT	8 cut(s)	348, 1392, 1406, 1438, 1546, 1817, 1991, 2027
Bst6I	CTCTTC	3 cut(s)	579, 842, 1062
BstACI	GRCGYC	4 cut(s)	158, 363, 1137, 1293
BstDEI	CTNAG	4 cut(s)	906, 993, 1052, 1095
BstENI	CCTNNNNNAGG	2 cut(s)	236, 405
BstF5I	GGATG	2 cut(s)	1541, 1965
BstH2I	RGCGCY	2 cut(s)	366, 425
BstHHI	GCGC	4 cut(s)	365, 424, 519, 1981
BstKTI	GATC	9 cut(s)	55, 180, 562, 1192, 1476, 1564, 1763, 1867, 2067
BstMAI	GTCTC	4 cut(s)	149, 350, 364, 1863
BstMBI	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
BstMCI	CGRYCG	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	316, 489
BstNSI	RCATGY	1 cut(s)	931
BstSCI	CCNGG	8 cut(s)	89, 90, 107, 122, 134, 314, 487, 837
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	3 cut(s)	306, 382, 1597
BstV1I	GCAGC	3 cut(s)	397, 1258, 1261
BstV2I	GAAGAC	2 cut(s)	1014, 1785
BstX2I	RGATCY	6 cut(s)	52, 559, 1189, 1473, 1760, 2064
BstYI	RGATCY	6 cut(s)	52, 559, 1189, 1473, 1760, 2064
BstZI	CGGCCG	1 cut(s)	68
Bsu15I	ATCGAT	2 cut(s)	813, 1461
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	6 cut(s)	70, 122, 151, 314, 411, 1767
BsuTUI	ATCGAT	2 cut(s)	813, 1461
BtrI	CACGTC	1 cut(s)	1063
BtsCI	GGATG	2 cut(s)	1541, 1965
BtsI	GCAGTG	1 cut(s)	1919
BtsIMutI	CAGTG	4 cut(s)	651, 1397, 1702, 1919
CciNI	GCGGCCGC	1 cut(s)	68
CfoI	GCGC	4 cut(s)	365, 424, 519, 1981
Cfr10I	RCCGGY	2 cut(s)	147, 359
Cfr13I	GGNCC	3 cut(s)	120, 150, 1766
Cfr9I	CCCGGG	1 cut(s)	90
ClaI	ATCGAT	2 cut(s)	813, 1461
CseI	GACGC	4 cut(s)	166, 621, 1145, 2033
Csp6I	GTAC	3 cut(s)	590, 656, 1434
CviAII	CATG	8 cut(s)	307, 538, 754, 774, 791, 928, 1418, 2048
CviQI	GTAC	3 cut(s)	590, 656, 1434
DdeI	CTNAG	4 cut(s)	906, 993, 1052, 1095
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	9 cut(s)	54, 179, 561, 1191, 1475, 1563, 1762, 1866, 2066
DpnII	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
EaeI	YGGCCR	2 cut(s)	68, 312
EagI	CGGCCG	1 cut(s)	68
Eam1104I	CTCTTC	3 cut(s)	579, 842, 1062
EarI	CTCTTC	3 cut(s)	579, 842, 1062
EciI	GGCGGA	2 cut(s)	229, 793
EclXI	CGGCCG	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	1140
Eco24I	GRGCYC	2 cut(s)	98, 688
Eco31I	GGTCTC	1 cut(s)	350
Eco32I	GATATC	2 cut(s)	1333, 1839
Eco52I	CGGCCG	1 cut(s)	68
Eco57I	CTGAAG	4 cut(s)	41, 483, 1038, 1467
Eco88I	CYCGRG	4 cut(s)	90, 97, 152, 681
EcoNI	CCTNNNNNAGG	2 cut(s)	236, 405
EcoRII	CCWGG	2 cut(s)	314, 487
EcoRV	GATATC	2 cut(s)	1333, 1839
EcoT14I	CCWWGG	1 cut(s)	1140
EcoT38I	GRGCYC	2 cut(s)	98, 688
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	1140
Esp3I	CGTCTC	2 cut(s)	149, 364
FaeI	CATG	8 cut(s)	310, 541, 757, 777, 794, 931, 1421, 2051
FatI	CATG	8 cut(s)	306, 537, 753, 773, 790, 927, 1417, 2047
FauI	CCCGC	2 cut(s)	111, 695
FauNDI	CATATG	1 cut(s)	1495
Fnu4HI	GCNGC	7 cut(s)	68, 71, 327, 386, 713, 1272, 1275
FokI	GGATG	2 cut(s)	1548, 1952
FriOI	GRGCYC	2 cut(s)	98, 688
Fsp4HI	GCNGC	7 cut(s)	68, 71, 327, 386, 713, 1272, 1275
FspBI	CTAG	3 cut(s)	389, 1413, 2068
FspI	TGCGCA	2 cut(s)	518, 1980
GlaI	GCGC	4 cut(s)	364, 423, 518, 1980
GluI	GCNGC	7 cut(s)	68, 71, 327, 386, 713, 1272, 1275
GsaI	CCCAGC	3 cut(s)	24, 78, 385
GsuI	CTGGAG	1 cut(s)	358
HaeII	RGCGCY	2 cut(s)	366, 425
HaeIII	GGCC	6 cut(s)	70, 122, 151, 314, 411, 1767
HgaI	GACGC	4 cut(s)	166, 621, 1145, 2033
HhaI	GCGC	4 cut(s)	365, 424, 519, 1981
Hin1I	GRCGYC	4 cut(s)	158, 363, 1137, 1293
Hin1II	CATG	8 cut(s)	310, 541, 757, 777, 794, 931, 1421, 2051
Hin6I	GCGC	4 cut(s)	363, 422, 517, 1979
HinP1I	GCGC	4 cut(s)	363, 422, 517, 1979
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HindIII	AAGCTT	2 cut(s)	614, 1178
HphI	GGTGA	6 cut(s)	1376, 1514, 1523, 1572, 1607, 1914
Hpy166II	GTNNAC	3 cut(s)	1135, 1282, 1922
Hpy188I	TCNGA	8 cut(s)	52, 463, 583, 667, 858, 1055, 1170, 1900
Hpy8I	GTNNAC	3 cut(s)	1135, 1282, 1922
HpyCH4III	ACNGT	8 cut(s)	348, 1392, 1406, 1438, 1546, 1817, 1991, 2027
HpyCH4IV	ACGT	4 cut(s)	1062, 1114, 1293, 1629
HpyCH4V	TGCA	9 cut(s)	407, 548, 773, 806, 917, 931, 1087, 1493, 1965
HpyF3I	CTNAG	4 cut(s)	906, 993, 1052, 1095
HpySE526I	ACGT	4 cut(s)	1062, 1114, 1293, 1629
Hsp92I	GRCGYC	4 cut(s)	158, 363, 1137, 1293
Hsp92II	CATG	8 cut(s)	310, 541, 757, 777, 794, 931, 1421, 2051
HspAI	GCGC	4 cut(s)	363, 422, 517, 1979
KasI	GGCGCC	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	1861
KroI	GCCGGC	1 cut(s)	147
KroNI	GCCGGC	1 cut(s)	149
Kzo9I	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
LmnI	GCTCC	7 cut(s)	64, 144, 269, 419, 697, 709, 780
Lsp1109I	GCAGC	3 cut(s)	397, 1258, 1261
LweI	GCATC	3 cut(s)	394, 892, 1974
MaeI	CTAG	3 cut(s)	389, 1413, 2068
MaeII	ACGT	4 cut(s)	1062, 1114, 1293, 1629
MaeIII	GTNAC	3 cut(s)	1511, 1625, 1630
MalI	GATC	9 cut(s)	54, 179, 561, 1191, 1475, 1563, 1762, 1866, 2066
MbiI	CCGCTC	2 cut(s)	67, 712
MboI	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
MfeI	CAATTG	1 cut(s)	1488
MflI	RGATCY	6 cut(s)	52, 559, 1189, 1473, 1760, 2064
MhlI	GDGCHC	5 cut(s)	98, 306, 382, 688, 1597
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	6 cut(s)	41, 327, 859, 1450, 1562, 1922
MmeI	TCCRAC	3 cut(s)	552, 687, 2001
MroI	TCCGGA	1 cut(s)	1861
MroNI	GCCGGC	1 cut(s)	147
MroXI	GAANNNNTTC	2 cut(s)	509, 1116
MseI	TTAA	6 cut(s)	572, 888, 965, 1031, 1356, 2055
MspR9I	CCNGG	8 cut(s)	91, 92, 109, 124, 136, 316, 489, 839
MunI	CAATTG	1 cut(s)	1488
Mva1269I	GAATGC	1 cut(s)	690
MvaI	CCWGG	2 cut(s)	316, 489
NaeI	GCCGGC	1 cut(s)	149
NarI	GGCGCC	1 cut(s)	363
NciI	CCSGG	6 cut(s)	91, 92, 109, 124, 136, 839
NdeI	CATATG	1 cut(s)	1495
NdeII	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
NgoMIV	GCCGGC	1 cut(s)	147
NlaIII	CATG	8 cut(s)	310, 541, 757, 777, 794, 931, 1421, 2051
NlaIV	GGNNCC	8 cut(s)	146, 303, 364, 493, 561, 1475, 1645, 1713
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	1511, 1630
NotI	GCGGCCGC	1 cut(s)	68
NsbI	TGCGCA	2 cut(s)	518, 1980
NspI	RCATGY	1 cut(s)	931
PaeR7I	CTCGAG	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	1 cut(s)	690
PdiI	GCCGGC	1 cut(s)	149
PdmI	GAANNNNTTC	2 cut(s)	509, 1116
PfeI	GAWTC	6 cut(s)	510, 662, 1040, 1458, 1612, 1936
PkrI	GCNGC	7 cut(s)	69, 72, 328, 387, 714, 1273, 1276
PleI	GAGTC	6 cut(s)	41, 327, 858, 1449, 1562, 1922
PluTI	GGCGCC	1 cut(s)	366
PpsI	GAGTC	6 cut(s)	41, 327, 858, 1449, 1562, 1922
PshBI	ATTAAT	1 cut(s)	965
Psp6I	CCWGG	2 cut(s)	314, 487
PspFI	CCCAGC	3 cut(s)	20, 74, 381
PspGI	CCWGG	2 cut(s)	314, 487
PspN4I	GGNNCC	8 cut(s)	146, 303, 364, 493, 561, 1475, 1645, 1713
PspPI	GGNCC	3 cut(s)	120, 150, 1766
PspXI	VCTCGAGB	1 cut(s)	681
PsuI	RGATCY	6 cut(s)	52, 559, 1189, 1473, 1760, 2064
RsaI	GTAC	3 cut(s)	591, 657, 1435
RsaNI	GTAC	3 cut(s)	590, 656, 1434
SaqAI	TTAA	6 cut(s)	572, 888, 965, 1031, 1356, 2055
SatI	GCNGC	7 cut(s)	68, 71, 327, 386, 713, 1272, 1275
Sau3AI	GATC	9 cut(s)	52, 177, 559, 1189, 1473, 1561, 1760, 1864, 2064
Sau96I	GGNCC	3 cut(s)	120, 150, 1766
SchI	GAGTC	6 cut(s)	41, 327, 859, 1450, 1562, 1922
ScrFI	CCNGG	8 cut(s)	91, 92, 109, 124, 136, 316, 489, 839
SduI	GDGCHC	5 cut(s)	98, 306, 382, 688, 1597
SfaNI	GCATC	3 cut(s)	394, 892, 1974
SfcI	CTRYAG	1 cut(s)	344
SfoI	GGCGCC	1 cut(s)	364
Sfr274I	CTCGAG	1 cut(s)	681
SlaI	CTCGAG	1 cut(s)	681
SmaI	CCCGGG	1 cut(s)	92
SmlI	CTYRAG	9 cut(s)	113, 167, 499, 681, 701, 745, 1193, 1556, 1570
SmoI	CTYRAG	9 cut(s)	113, 167, 499, 681, 701, 745, 1193, 1556, 1570
SsiI	CCGC	8 cut(s)	67, 71, 118, 214, 327, 688, 712, 778
SspDI	GGCGCC	1 cut(s)	362
SspMI	CTAG	3 cut(s)	389, 1413, 2068
StyD4I	CCNGG	8 cut(s)	89, 90, 107, 122, 134, 314, 487, 837
StyI	CCWWGG	1 cut(s)	1140
TaaI	ACNGT	8 cut(s)	348, 1392, 1406, 1438, 1546, 1817, 1991, 2027
TaiI	ACGT	4 cut(s)	1065, 1117, 1296, 1632
TaqI	TCGA	9 cut(s)	8, 180, 682, 735, 813, 1261, 1461, 1727, 1867
TaqII	GACCGA	1 cut(s)	1591
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	4 cut(s)	70, 73, 329, 715
TfiI	GAWTC	6 cut(s)	510, 662, 1040, 1458, 1612, 1936
Tru1I	TTAA	6 cut(s)	572, 888, 965, 1031, 1356, 2055
Tru9I	TTAA	6 cut(s)	572, 888, 965, 1031, 1356, 2055
TscAI	CASTG	4 cut(s)	651, 1397, 1702, 1919
TseFI	GTSAC	2 cut(s)	1511, 1630
TseI	GCWGC	3 cut(s)	385, 1271, 1274
Tsp45I	GTSAC	2 cut(s)	1511, 1630
TspGWI	ACGGA	3 cut(s)	157, 388, 1330
TspMI	CCCGGG	1 cut(s)	90
TspRI	CASTG	4 cut(s)	651, 1397, 1702, 1919
VspI	ATTAAT	1 cut(s)	965
XagI	CCTNNNNNAGG	2 cut(s)	236, 405
XapI	RAATTY	3 cut(s)	798, 1198, 1428
XceI	RCATGY	1 cut(s)	931
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XhoI	CTCGAG	1 cut(s)	681
XmaI	CCCGGG	1 cut(s)	90
XmnI	GAANNNNTTC	2 cut(s)	509, 1116
XspI	CTAG	3 cut(s)	389, 1413, 2068
ZraI	GACGTC	1 cut(s)	1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.