Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009527

Physical Location & Seq

Genomic Coordinates Forward (+)

34038188 .. 34042463

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGAAGGTGCAACAAAATGGGATCCTGTCTGCTTAAAATCATCAGAAGAGGTACGCCAGATTTACAGCCAAATGAAGCTTCTTGACCAGCAAGCGTCTGCTGTATCAGTGGTAAATGTACTTGAATCTGAATTAGAGCAGGCTCGAGCCCGGATTCAGGAGCTTGAGTTGGAGAGGCGTTCCTCAAAAAAGAAACTCGAACACTTCTTGAGGAACATGAATGAGGAAAAGGTTGCATGGCGGAGCAGAGAGCATGAGAAAATTCGTGCATTTATCGATGACATCAAGGTTGAATTGAACCGGGAAAGGAAGAGTCGTCAGAGAACTGAAATACTCAATTCCAAATTGGTTAATGAGCTGGCTGATGCTAAGTTATCTGCAAAGCGATACATGCAGGACTATGAAAAAGAAAGAAAGGCAAGAGAATTAATTGAGGAAGTATGTGATGAGCTTGCTAAGGAAATTGGAGAAGACAAGGCTGAAGTTGAAGCATTAAAGAGAGAATCTATGAAACTCAGAGATGACGTGGAAGAGGAAAGGAAGATGTTGCAGATGGCTGAGGTCTGGCGTGAGGAACGTGTTCAAATGAAGCTGGTTGACGCAAAGGTGGCAGTTGAGGAGAAGTATTCTCTGATGAACAAGCTTGTGGCAGATCTTGAGATTTTTTTGAAGTCAAGAAGTTCAACCCCAGATGTGAAGGAAATGAGAGAAGGAGAGTTTCTTCGACAGGTTGCTGCTGCTGTAAACATTCAAGACGTCAAGGACTTTTCTTATGAACCCCCCAATCCTGATGATATCTTTTCTGTGTTTGAAGAAGTTAATTTTGGTGAGCCTAATGAGAGGGAGATTGAACAGTGTGTTGCTTACAGTCCTGCTAGTCATGCTTCCAAAATTCGTACTGTGAGTCCTGAAGCTAACGGAATCGATAAAAACCGGATCCAGAGGCACGCAATTGCATATGTTGGTGAGAATGGTGACATAGAAGAAGATGAGAGTGGATGGGAAACTGTGAGCCATCTTGAGGATCAGGACTCAAGCTATTCACCAGACGGGAGTGCCCCTTCGGTCAATAAGAATCACCGAGAGAGTAATGTCACAGATAGTGGAACCGACGAATGGGAAGAAGAAAATGATGGGGAGGAAACACCAATTACCGAAATCAGTGAGGTTTGCTCGGTGCCAATAAAGCAGTCGAAGAAGGTATCAAGTATAGCAAGGCTTTGGAGATCTGGCCCAAATAATGAAGACAACTACAAGATTATCTCGGTAGAAGGAATAAACGGTAGGCTTTCAAATGGAAGGATATCCAAAGGGGATATTTTGTCTCCGGATCGAGGTTCAGGTAAAGGTGGTTTGAGCCCCTCTGATTTAGTGGGGCAGTGGAGTTCACCGGACTCTGGGAATCATCATATTCGGGGTATGAAAGGGTGCATCCCTCTTGGTGCGCAGAAGAACAGTTTGAAGGCAAGACTTTTGGAGGCAAGGTTGGACAGTCAAAAAGTTCAACTGCGTCATGTGCTTAAACAGAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

511

Amino Acids

58.22

Weight (kDa)

5.24

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50660
fragaria_vesca	FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650 FvH4_3g22650
malus_domestica	MD03G1201300.v1.1 MD11G1218700.v1.1
prunus_persica	Prupe.4G212500_v2.0.a1
pyrus_communis	pycom03g15260 pycom11g19260
rosa_chinensis	RchiOBHm_Chr5g0039421
rosa_laevigata	RLG00000033913
rosa_multiflora	Rmu_co8501983.1_g000001
rosa_roxburghii	Rroxscaffold_1G00040560 Rroxscaffold_1G00041790
rosa_rugosa	Rorug05G0179100
rosa_samantha	Rh5AG265700 Rh5BG270300 Rh5CG303300 Rh5DG278300
rosa_wichuraiana	Rw5G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	759
Acc16I	TGCGCA	1 cut(s)	1446
AccB1I	GGYRCC	1 cut(s)	1177
AccIII	TCCGGA	1 cut(s)	1327
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	6 cut(s)	17, 30, 931, 944, 1032, 1338
AcsI	RAATTY	2 cut(s)	261, 891
AcuI	CTGAAG	2 cut(s)	501, 930
AcyI	GRCGYC	1 cut(s)	756
AfaI	GTAC	3 cut(s)	54, 120, 898
AfiI	CCNNNNNNNGG	5 cut(s)	157, 1021, 1116, 1334, 1397
AflIII	ACRYGT	1 cut(s)	577
AjiI	CACGTC	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	4 cut(s)	63, 95, 807, 839
AluBI	AGCT	8 cut(s)	79, 163, 358, 451, 592, 643, 914, 1038
AluI	AGCT	8 cut(s)	79, 163, 358, 451, 592, 643, 914, 1038
Alw26I	GTCTC	1 cut(s)	1329
AlwI	GGATC	6 cut(s)	17, 30, 931, 944, 1032, 1338
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	1327
AoxI	GGCC	1 cut(s)	1231
ApeKI	GCWGC	2 cut(s)	734, 737
ApoI	RAATTY	2 cut(s)	261, 891
AseI	ATTAAT	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	1447
AspS9I	GGNCC	1 cut(s)	1232
AsuC2I	CCSGG	2 cut(s)	151, 302
AsuHPI	GGTGA	6 cut(s)	839, 977, 986, 1035, 1070, 1380
AvaI	CYCGRG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	1060
BamHI	GGATCC	2 cut(s)	22, 936
BanI	GGYRCC	1 cut(s)	1177
BanII	GRGCYC	2 cut(s)	151, 1361
BbsI	GAAGAC	2 cut(s)	477, 1251
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	721, 724
BccI	CCATC	4 cut(s)	547, 993, 1023, 1127
BcnI	CCSGG	2 cut(s)	151, 302
BcoDI	GTCTC	1 cut(s)	1329
BfaI	CTAG	2 cut(s)	876, 1534
BglII	AGATCT	3 cut(s)	652, 1226, 1530
BisI	GCNGC	2 cut(s)	735, 738
BlsI	GCNGC	2 cut(s)	736, 739
Bme1390I	CCNGG	2 cut(s)	151, 302
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	1232
BmiI	GGNNCC	4 cut(s)	24, 938, 1108, 1179
BmrFI	CCNGG	2 cut(s)	151, 302
BmsI	GCATC	2 cut(s)	355, 1440
BpiI	GAAGAC	2 cut(s)	477, 1251
BplI	GAGNNNNNCTC	2 cut(s)	1157, 1189
Bpu10I	CCTNAGC	2 cut(s)	456, 558
BpuEI	CTTGAG	5 cut(s)	185, 229, 677, 1018, 1040
BpuMI	CCSGG	2 cut(s)	151, 302
Bsa29I	ATCGAT	2 cut(s)	276, 924
BsaHI	GRCGYC	1 cut(s)	756
BsaWI	WCCGGW	3 cut(s)	933, 1327, 1390
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 1469, 1499
Bsc4I	CCNNNNNNNGG	5 cut(s)	157, 1021, 1116, 1334, 1397
BseAI	TCCGGA	1 cut(s)	1327
BseCI	ATCGAT	2 cut(s)	276, 924
BseGI	GGATG	2 cut(s)	1004, 1431
BseLI	CCNNNNNNNGG	5 cut(s)	157, 1021, 1116, 1334, 1397
BseMII	CTCAG	2 cut(s)	529, 549
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	1 cut(s)	1060
BseXI	GCAGC	2 cut(s)	721, 724
BshFI	GGCC	1 cut(s)	1233
BshNI	GGYRCC	1 cut(s)	1177
BshVI	ATCGAT	2 cut(s)	276, 924
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	5 cut(s)	151, 301, 934, 1328, 1391
BslI	CCNNNNNNNGG	5 cut(s)	157, 1021, 1116, 1334, 1397
BsmAI	GTCTC	1 cut(s)	1329
BsnI	GGCC	1 cut(s)	1233
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	3 cut(s)	151, 1060, 1361
Bsp13I	TCCGGA	1 cut(s)	1327
Bsp143I	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	1233
BspCNI	CTCAG	2 cut(s)	528, 550
BspDI	ATCGAT	2 cut(s)	276, 924
BspEI	TCCGGA	1 cut(s)	1327
BspLI	GGNNCC	4 cut(s)	24, 938, 1108, 1179
BspPI	GGATC	6 cut(s)	17, 30, 931, 944, 1032, 1338
BspT107I	GGYRCC	1 cut(s)	1177
BssMI	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
BssNI	GRCGYC	1 cut(s)	756
Bst4CI	ACNGT	7 cut(s)	855, 869, 901, 1009, 1283, 1457, 1493
Bst6I	CTCTTC	3 cut(s)	42, 305, 525
BstACI	GRCGYC	1 cut(s)	756
BstC8I	GCNNGC	5 cut(s)	93, 141, 360, 453, 948
BstDEI	CTNAG	4 cut(s)	369, 456, 515, 558
BstF5I	GGATG	2 cut(s)	1004, 1431
BstHHI	GCGC	1 cut(s)	1447
BstKTI	GATC	7 cut(s)	25, 655, 939, 1027, 1229, 1333, 1533
BstMAI	GTCTC	1 cut(s)	1329
BstMBI	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
BstMWI	GCNNNNNNNGC	5 cut(s)	391, 608, 881, 1186, 1516
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	2 cut(s)	149, 300
BstSLI	GKGCMC	1 cut(s)	1060
BstV1I	GCAGC	2 cut(s)	721, 724
BstV2I	GAAGAC	2 cut(s)	477, 1251
BstX2I	RGATCY	5 cut(s)	22, 652, 936, 1226, 1530
BstYI	RGATCY	5 cut(s)	22, 652, 936, 1226, 1530
Bsu15I	ATCGAT	2 cut(s)	276, 924
BsuRI	GGCC	1 cut(s)	1233
BsuTUI	ATCGAT	2 cut(s)	276, 924
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	1004, 1431
BtsI	GCAGTG	1 cut(s)	1385
BtsIMutI	CAGTG	4 cut(s)	114, 860, 1168, 1385
Cac8I	GCNNGC	5 cut(s)	93, 141, 360, 453, 948
CfoI	GCGC	1 cut(s)	1447
Cfr13I	GGNCC	1 cut(s)	1232
ClaI	ATCGAT	2 cut(s)	276, 924
CseI	GACGC	3 cut(s)	84, 608, 1499
Csp6I	GTAC	3 cut(s)	53, 119, 897
CviAII	CATG	6 cut(s)	217, 237, 254, 391, 881, 1514
CviQI	GTAC	3 cut(s)	53, 119, 897
DdeI	CTNAG	4 cut(s)	369, 456, 515, 558
DpnI	GATC	7 cut(s)	24, 654, 938, 1026, 1228, 1332, 1532
DpnII	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
Eam1104I	CTCTTC	3 cut(s)	42, 305, 525
EarI	CTCTTC	3 cut(s)	42, 305, 525
EciI	GGCGGA	1 cut(s)	256
Eco24I	GRGCYC	2 cut(s)	151, 1361
Eco32I	GATATC	2 cut(s)	796, 1305
Eco57I	CTGAAG	2 cut(s)	501, 930
Eco88I	CYCGRG	1 cut(s)	144
EcoRV	GATATC	2 cut(s)	796, 1305
EcoT38I	GRGCYC	2 cut(s)	151, 1361
FaeI	CATG	6 cut(s)	220, 240, 257, 394, 884, 1517
FatI	CATG	6 cut(s)	216, 236, 253, 390, 880, 1513
FauNDI	CATATG	1 cut(s)	958
Fnu4HI	GCNGC	2 cut(s)	735, 738
FokI	GGATG	2 cut(s)	1011, 1418
FriOI	GRGCYC	2 cut(s)	151, 1361
Fsp4HI	GCNGC	2 cut(s)	735, 738
FspBI	CTAG	2 cut(s)	876, 1534
FspI	TGCGCA	1 cut(s)	1446
GlaI	GCGC	1 cut(s)	1446
GluI	GCNGC	2 cut(s)	735, 738
HaeIII	GGCC	1 cut(s)	1233
HapII	CCGG	5 cut(s)	151, 301, 934, 1328, 1391
HgaI	GACGC	3 cut(s)	84, 608, 1499
HhaI	GCGC	1 cut(s)	1447
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	6 cut(s)	220, 240, 257, 394, 884, 1517
Hin6I	GCGC	1 cut(s)	1445
HinP1I	GCGC	1 cut(s)	1445
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	2 cut(s)	77, 641
HpaII	CCGG	5 cut(s)	151, 301, 934, 1328, 1391
HphI	GGTGA	6 cut(s)	839, 977, 986, 1035, 1070, 1380
Hpy166II	GTNNAC	3 cut(s)	598, 745, 1388
Hpy188I	TCNGA	6 cut(s)	46, 130, 321, 518, 633, 1366
Hpy8I	GTNNAC	3 cut(s)	598, 745, 1388
Hpy99I	CGWCG	1 cut(s)	1115
HpyAV	CCTTC	7 cut(s)	691, 704, 1071, 1192, 1265, 1293, 1456
HpyCH4III	ACNGT	7 cut(s)	855, 869, 901, 1009, 1283, 1457, 1493
HpyCH4IV	ACGT	3 cut(s)	525, 577, 756
HpyCH4V	TGCA	8 cut(s)	11, 236, 269, 380, 394, 550, 956, 1431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	391, 608, 881, 1186, 1516
HpyF3I	CTNAG	4 cut(s)	369, 456, 515, 558
HpySE526I	ACGT	3 cut(s)	525, 577, 756
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	6 cut(s)	220, 240, 257, 394, 884, 1517
HspAI	GCGC	1 cut(s)	1445
Kpn2I	TCCGGA	1 cut(s)	1327
Kzo9I	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
LmnI	GCTCC	2 cut(s)	160, 243
Lsp1109I	GCAGC	2 cut(s)	721, 724
LweI	GCATC	2 cut(s)	355, 1440
MaeI	CTAG	2 cut(s)	876, 1534
MaeII	ACGT	3 cut(s)	525, 577, 756
MaeIII	GTNAC	2 cut(s)	974, 1093
MalI	GATC	7 cut(s)	24, 654, 938, 1026, 1228, 1332, 1532
MboI	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
MfeI	CAATTG	1 cut(s)	951
MflI	RGATCY	5 cut(s)	22, 652, 936, 1226, 1530
MhlI	GDGCHC	3 cut(s)	151, 1060, 1361
MlyI	GAGTC	4 cut(s)	322, 913, 1025, 1388
MmeI	TCCRAC	2 cut(s)	150, 1467
MroI	TCCGGA	1 cut(s)	1327
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	6 cut(s)	35, 351, 428, 494, 819, 1521
MspI	CCGG	5 cut(s)	151, 301, 934, 1328, 1391
MspR9I	CCNGG	2 cut(s)	151, 302
MunI	CAATTG	1 cut(s)	951
MwoI	GCNNNNNNNGC	5 cut(s)	391, 608, 881, 1186, 1516
NciI	CCSGG	2 cut(s)	151, 302
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
NlaIII	CATG	6 cut(s)	220, 240, 257, 394, 884, 1517
NlaIV	GGNNCC	4 cut(s)	24, 938, 1108, 1179
NmuCI	GTSAC	2 cut(s)	974, 1093
NsbI	TGCGCA	1 cut(s)	1446
NspI	RCATGY	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	6 cut(s)	125, 154, 503, 921, 1075, 1402
PkrI	GCNGC	2 cut(s)	736, 739
PleI	GAGTC	4 cut(s)	321, 912, 1025, 1388
PpsI	GAGTC	4 cut(s)	321, 912, 1025, 1388
PshBI	ATTAAT	1 cut(s)	428
PspN4I	GGNNCC	4 cut(s)	24, 938, 1108, 1179
PspPI	GGNCC	1 cut(s)	1232
PspXI	VCTCGAGB	1 cut(s)	144
PsuI	RGATCY	5 cut(s)	22, 652, 936, 1226, 1530
RsaI	GTAC	3 cut(s)	54, 120, 898
RsaNI	GTAC	3 cut(s)	53, 119, 897
SaqAI	TTAA	6 cut(s)	35, 351, 428, 494, 819, 1521
SatI	GCNGC	2 cut(s)	735, 738
Sau3AI	GATC	7 cut(s)	22, 652, 936, 1024, 1226, 1330, 1530
Sau96I	GGNCC	1 cut(s)	1232
SchI	GAGTC	4 cut(s)	322, 913, 1025, 1388
ScrFI	CCNGG	2 cut(s)	151, 302
SduI	GDGCHC	3 cut(s)	151, 1060, 1361
SfaNI	GCATC	2 cut(s)	355, 1440
Sfr274I	CTCGAG	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	144
SmlI	CTYRAG	6 cut(s)	144, 164, 208, 656, 1019, 1033
SmoI	CTYRAG	6 cut(s)	144, 164, 208, 656, 1019, 1033
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	2 cut(s)	876, 1534
StyD4I	CCNGG	2 cut(s)	149, 300
TaaI	ACNGT	7 cut(s)	855, 869, 901, 1009, 1283, 1457, 1493
TaiI	ACGT	3 cut(s)	528, 580, 759
TaqI	TCGA	7 cut(s)	145, 198, 276, 724, 924, 1193, 1333
TaqII	GACCGA	1 cut(s)	1054
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	6 cut(s)	125, 154, 503, 921, 1075, 1402
Tru1I	TTAA	6 cut(s)	35, 351, 428, 494, 819, 1521
Tru9I	TTAA	6 cut(s)	35, 351, 428, 494, 819, 1521
TscAI	CASTG	4 cut(s)	114, 860, 1168, 1385
TseFI	GTSAC	2 cut(s)	974, 1093
TseI	GCWGC	2 cut(s)	734, 737
Tsp45I	GTSAC	2 cut(s)	974, 1093
TspDTI	ATGAA	9 cut(s)	89, 233, 417, 524, 602, 650, 789, 1257, 1436
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	4 cut(s)	114, 860, 1168, 1385
VspI	ATTAAT	1 cut(s)	428
XapI	RAATTY	2 cut(s)	261, 891
XceI	RCATGY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	2 cut(s)	876, 1534
ZraI	GACGTC	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.