Rmu_co8501983.1_g000001

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8501983.1
Physical Location & Seq
Reverse (-)
354 .. 3023
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8501983.1_g000001.1.cds

Sequence Viewer

Length: 1674 bp
cctgatgccggccatattggagcaccatttctccgccaacgcaatagcaaaggatttgcttctgaagcaaaggataatttacaaagccctggttccacctcaaggaatggattcttgcgcaagttatccaactctgtaatggaaggtgcaacaaaatgggatcctgtctgcttaaaatcatcagaagaggtacgccagatttacagccaaatgaagcttcttgaccagcaagcgtctgctgtatcagtggtaaatgtacttgaatctgaattagagcaggctcgagcccggattcaggagcttgagttggagcggcgttcctcaaaaaagaaactcgaacacttcttgaggaacatgaatgaggaaaaggttgcatggcggagcagagagcatgagaaaattcgtgcatttatcgatgacatcaaggttgaattgaaccgggaaaggaagagtcgtcagagaactgaaatactcaattccaaattggttaatgagctggctgatgctaagttatctgcaaagcgatacatgcaggactatgaaaaagaaagaaaggcaagagaattaattgaggaagtatgtgatgagcttgctaaggaaattggagaagacaaggctgaagttgaagcattaaagagagaatctatgaaactcagagatgacgtggaagaggaaaggaagatgttgcagatggctgaggtctggcgtgaggaacgtgttcaaatgaagctggttgacgcaaaggtggcagttgaggagaagtattctctgatgaacaagcttgtggcagatcttgagatttttttgaagtcaagaagttcaaccccagatgtgaaggaaatgagagaaggtgagtttcttcgacaggctgctgctgctgtaaacattcaagacgtcaaggaattttcttatgaaccccccaatcctgatgatatcttttctgtgtttgaagaagttaattttggtgagcctaatgagagggagattgaacagtgtgttgcttacagtcctgctagtcatgcttccaaaattcgtactgtgagtcctgaagctaatggaatcgataaaaaccggatccagaggcacgcaattgcatatgttggtgagaatggtgacatagaagaagatgagagtggatgggaaactgtgagccatcttgaggatcaggactcaagctattcaccagacgggagtgccccttcggtcaataagaatcaccgagagagtaatgtcacagatagtggaaccgacgaatgggaagaagaaaatgatggggaggaaacaccaattaccgaaatcagtgaggtttgctcggtgccaataaagcagtcgaagaaggtatcaagtatagcaaggctttggagatctggcccaaataatgaagacaactacaagattatctcggtagaaggaataaacggtaggctttcaaatggaaggatatccaaaggggatattttgtctccggatcgaggttcaggtaaaggtggtttgagcccctctgatttagtggggcagtggagttcaccggactctgggaatcatcatattcggggtatgaaagggtgcatccctcttggtgcgcagaagaacagtttgaaggcaagacttttggaggcaaggttggacagtcaaaaagttcaactgcgtcatgtgcttaaacagaagatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

557

Amino Acids

63.1

Weight (kDa)

5.46

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 897
Acc16I TGCGCA 2 cut(s) 119, 1584
AccB1I GGYRCC 1 cut(s) 1315
AccBSI CCGCTC 1 cut(s) 313
AccIII TCCGGA 1 cut(s) 1465
AciI CCGC 3 cut(s) 34, 313, 379
AclWI GGATC 6 cut(s) 155, 168, 1069, 1082, 1170, 1476
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 3 cut(s) 399, 902, 1029
AcuI CTGAAG 3 cut(s) 84, 639, 1068
AcyI GRCGYC 1 cut(s) 894
AfaI GTAC 3 cut(s) 192, 258, 1036
AfiI CCNNNNNNNGG 7 cut(s) 8, 102, 295, 1159, 1254, 1472, 1535
AflIII ACRYGT 1 cut(s) 715
AjiI CACGTC 1 cut(s) 664
AjnI CCWGG 1 cut(s) 88
AjuI GAANNNNNNNTTGG 4 cut(s) 201, 233, 945, 977
AluBI AGCT 8 cut(s) 217, 301, 496, 589, 730, 781, 1052, 1176
AluI AGCT 8 cut(s) 217, 301, 496, 589, 730, 781, 1052, 1176
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 1467
AlwI GGATC 6 cut(s) 155, 168, 1069, 1082, 1170, 1476
Ama87I CYCGRG 1 cut(s) 282
Aor13HI TCCGGA 1 cut(s) 1465
AoxI GGCC 2 cut(s) 10, 1369
ApeKI GCWGC 3 cut(s) 869, 872, 875
ApoI RAATTY 3 cut(s) 399, 902, 1029
AseI ATTAAT 1 cut(s) 566
Asp700I GAANNNNTTC 2 cut(s) 110, 717
AspLEI GCGC 2 cut(s) 120, 1585
AspS9I GGNCC 1 cut(s) 1370
AsuC2I CCSGG 2 cut(s) 289, 440
AsuHPI GGTGA 7 cut(s) 863, 977, 1115, 1124, 1173, 1208, 1518
AvaI CYCGRG 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 1198
BamHI GGATCC 2 cut(s) 160, 1074
BanI GGYRCC 1 cut(s) 1315
BanII GRGCYC 2 cut(s) 289, 1499
BbsI GAAGAC 2 cut(s) 615, 1389
Bbv12I GWGCWC 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 3 cut(s) 856, 859, 862
BccI CCATC 4 cut(s) 685, 1131, 1161, 1265
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 2 cut(s) 289, 440
BcoDI GTCTC 1 cut(s) 1467
BfaI CTAG 2 cut(s) 1014, 1672
BglII AGATCT 3 cut(s) 790, 1364, 1668
BisI GCNGC 4 cut(s) 314, 870, 873, 876
BlsI GCNGC 4 cut(s) 315, 871, 874, 877
Bme1390I CCNGG 3 cut(s) 90, 289, 440
BmeT110I CYCGRG 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 1 cut(s) 1370
BmiI GGNNCC 5 cut(s) 94, 162, 1076, 1246, 1317
BmrFI CCNGG 3 cut(s) 90, 289, 440
BmsI GCATC 2 cut(s) 493, 1578
BpiI GAAGAC 2 cut(s) 615, 1389
BplI GAGNNNNNCTC 2 cut(s) 1295, 1327
Bpu10I CCTNAGC 2 cut(s) 594, 696
BpuEI CTTGAG 6 cut(s) 85, 323, 367, 815, 1156, 1178
BpuMI CCSGG 2 cut(s) 289, 440
Bsa29I ATCGAT 2 cut(s) 414, 1062
BsaHI GRCGYC 1 cut(s) 894
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 3 cut(s) 1071, 1465, 1528
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 290, 320, 1607, 1637
Bsc4I CCNNNNNNNGG 7 cut(s) 8, 102, 295, 1159, 1254, 1472, 1535
Bse118I RCCGGY 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 1465
BseBI CCWGG 1 cut(s) 90
BseCI ATCGAT 2 cut(s) 414, 1062
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 1142, 1569
BseLI CCNNNNNNNGG 7 cut(s) 8, 102, 295, 1159, 1254, 1472, 1535
BseMII CTCAG 2 cut(s) 667, 687
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 1198
BseXI GCAGC 3 cut(s) 856, 859, 862
BshFI GGCC 2 cut(s) 12, 1371
BshNI GGYRCC 1 cut(s) 1315
BshVI ATCGAT 2 cut(s) 414, 1062
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 6 cut(s) 9, 289, 439, 1072, 1466, 1529
BslI CCNNNNNNNGG 7 cut(s) 8, 102, 295, 1159, 1254, 1472, 1535
BsmAI GTCTC 1 cut(s) 1467
BsnI GGCC 2 cut(s) 12, 1371
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 4 cut(s) 25, 289, 1198, 1499
Bsp13I TCCGGA 1 cut(s) 1465
Bsp143I GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
BspACI CCGC 3 cut(s) 34, 313, 379
BspANI GGCC 2 cut(s) 12, 1371
BspCNI CTCAG 2 cut(s) 666, 688
BspDI ATCGAT 2 cut(s) 414, 1062
BspEI TCCGGA 1 cut(s) 1465
BspLI GGNNCC 5 cut(s) 94, 162, 1076, 1246, 1317
BspPI GGATC 6 cut(s) 155, 168, 1069, 1082, 1170, 1476
BspT107I GGYRCC 1 cut(s) 1315
BsrBI CCGCTC 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
BssNI GRCGYC 1 cut(s) 894
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 7 cut(s) 993, 1007, 1039, 1147, 1421, 1595, 1631
Bst6I CTCTTC 3 cut(s) 180, 443, 663
BstACI GRCGYC 1 cut(s) 894
BstC8I GCNNGC 6 cut(s) 10, 231, 279, 498, 591, 1086
BstDEI CTNAG 4 cut(s) 507, 594, 653, 696
BstF5I GGATG 2 cut(s) 1142, 1569
BstHHI GCGC 2 cut(s) 120, 1585
BstKTI GATC 7 cut(s) 163, 793, 1077, 1165, 1367, 1471, 1671
BstMAI GTCTC 1 cut(s) 1467
BstMBI GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
BstMWI GCNNNNNNNGC 7 cut(s) 65, 529, 746, 875, 1019, 1324, 1654
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 3 cut(s) 88, 287, 438
BstSLI GKGCMC 1 cut(s) 1198
BstV1I GCAGC 3 cut(s) 856, 859, 862
BstV2I GAAGAC 2 cut(s) 615, 1389
BstX2I RGATCY 5 cut(s) 160, 790, 1074, 1364, 1668
BstYI RGATCY 5 cut(s) 160, 790, 1074, 1364, 1668
Bsu15I ATCGAT 2 cut(s) 414, 1062
BsuRI GGCC 2 cut(s) 12, 1371
BsuTUI ATCGAT 2 cut(s) 414, 1062
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 2 cut(s) 1142, 1569
BtsI GCAGTG 1 cut(s) 1523
BtsIMutI CAGTG 4 cut(s) 252, 998, 1306, 1523
Cac8I GCNNGC 6 cut(s) 10, 231, 279, 498, 591, 1086
CfoI GCGC 2 cut(s) 120, 1585
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 1370
ClaI ATCGAT 2 cut(s) 414, 1062
CseI GACGC 3 cut(s) 222, 746, 1637
Csp6I GTAC 3 cut(s) 191, 257, 1035
CviAII CATG 6 cut(s) 355, 375, 392, 529, 1019, 1652
CviQI GTAC 3 cut(s) 191, 257, 1035
DdeI CTNAG 4 cut(s) 507, 594, 653, 696
DpnI GATC 7 cut(s) 162, 792, 1076, 1164, 1366, 1470, 1670
DpnII GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 3 cut(s) 180, 443, 663
EarI CTCTTC 3 cut(s) 180, 443, 663
EciI GGCGGA 2 cut(s) 23, 394
Eco24I GRGCYC 2 cut(s) 289, 1499
Eco32I GATATC 2 cut(s) 934, 1443
Eco57I CTGAAG 3 cut(s) 84, 639, 1068
Eco88I CYCGRG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 2 cut(s) 934, 1443
EcoT38I GRGCYC 2 cut(s) 289, 1499
FaeI CATG 6 cut(s) 358, 378, 395, 532, 1022, 1655
FatI CATG 6 cut(s) 354, 374, 391, 528, 1018, 1651
FauNDI CATATG 1 cut(s) 1096
Fnu4HI GCNGC 4 cut(s) 314, 870, 873, 876
FokI GGATG 2 cut(s) 1149, 1556
FriOI GRGCYC 2 cut(s) 289, 1499
Fsp4HI GCNGC 4 cut(s) 314, 870, 873, 876
FspBI CTAG 2 cut(s) 1014, 1672
FspI TGCGCA 2 cut(s) 119, 1584
GlaI GCGC 2 cut(s) 119, 1584
GluI GCNGC 4 cut(s) 314, 870, 873, 876
HaeIII GGCC 2 cut(s) 12, 1371
HapII CCGG 6 cut(s) 9, 289, 439, 1072, 1466, 1529
HgaI GACGC 3 cut(s) 222, 746, 1637
HhaI GCGC 2 cut(s) 120, 1585
Hin1I GRCGYC 1 cut(s) 894
Hin1II CATG 6 cut(s) 358, 378, 395, 532, 1022, 1655
Hin6I GCGC 2 cut(s) 118, 1583
HinP1I GCGC 2 cut(s) 118, 1583
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 2 cut(s) 215, 779
HpaII CCGG 6 cut(s) 9, 289, 439, 1072, 1466, 1529
HphI GGTGA 7 cut(s) 863, 977, 1115, 1124, 1173, 1208, 1518
Hpy166II GTNNAC 3 cut(s) 736, 883, 1526
Hpy188I TCNGA 7 cut(s) 64, 184, 268, 459, 656, 771, 1504
Hpy8I GTNNAC 3 cut(s) 736, 883, 1526
Hpy99I CGWCG 1 cut(s) 1253
HpyAV CCTTC 8 cut(s) 137, 829, 842, 1209, 1330, 1403, 1431, 1594
HpyCH4III ACNGT 7 cut(s) 993, 1007, 1039, 1147, 1421, 1595, 1631
HpyCH4IV ACGT 3 cut(s) 663, 715, 894
HpyCH4V TGCA 8 cut(s) 149, 374, 407, 518, 532, 688, 1094, 1569
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 529, 746, 875, 1019, 1324, 1654
HpyF3I CTNAG 4 cut(s) 507, 594, 653, 696
HpySE526I ACGT 3 cut(s) 663, 715, 894
Hsp92I GRCGYC 1 cut(s) 894
Hsp92II CATG 6 cut(s) 358, 378, 395, 532, 1022, 1655
HspAI GCGC 2 cut(s) 118, 1583
Kpn2I TCCGGA 1 cut(s) 1465
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
LmnI GCTCC 4 cut(s) 20, 298, 310, 381
Lsp1109I GCAGC 3 cut(s) 856, 859, 862
LweI GCATC 2 cut(s) 493, 1578
MaeI CTAG 2 cut(s) 1014, 1672
MaeII ACGT 3 cut(s) 663, 715, 894
MaeIII GTNAC 2 cut(s) 1112, 1231
MalI GATC 7 cut(s) 162, 792, 1076, 1164, 1366, 1470, 1670
MbiI CCGCTC 1 cut(s) 313
MboI GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
MfeI CAATTG 1 cut(s) 1089
MflI RGATCY 5 cut(s) 160, 790, 1074, 1364, 1668
MhlI GDGCHC 4 cut(s) 25, 289, 1198, 1499
MlyI GAGTC 4 cut(s) 460, 1051, 1163, 1526
MmeI TCCRAC 3 cut(s) 153, 288, 1605
MroI TCCGGA 1 cut(s) 1465
MroNI GCCGGC 1 cut(s) 8
MroXI GAANNNNTTC 2 cut(s) 110, 717
MseI TTAA 6 cut(s) 173, 489, 566, 632, 957, 1659
MspI CCGG 6 cut(s) 9, 289, 439, 1072, 1466, 1529
MspR9I CCNGG 3 cut(s) 90, 289, 440
MunI CAATTG 1 cut(s) 1089
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 7 cut(s) 65, 529, 746, 875, 1019, 1324, 1654
NaeI GCCGGC 1 cut(s) 10
NciI CCSGG 2 cut(s) 289, 440
NdeI CATATG 1 cut(s) 1096
NdeII GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 6 cut(s) 358, 378, 395, 532, 1022, 1655
NlaIV GGNNCC 5 cut(s) 94, 162, 1076, 1246, 1317
NmuCI GTSAC 2 cut(s) 1112, 1231
NsbI TGCGCA 2 cut(s) 119, 1584
NspI RCATGY 1 cut(s) 532
PaeR7I CTCGAG 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 10
PdmI GAANNNNTTC 2 cut(s) 110, 717
PfeI GAWTC 7 cut(s) 111, 263, 292, 641, 1059, 1213, 1540
PkrI GCNGC 4 cut(s) 315, 871, 874, 877
PleI GAGTC 4 cut(s) 459, 1050, 1163, 1526
PpsI GAGTC 4 cut(s) 459, 1050, 1163, 1526
PshBI ATTAAT 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 5 cut(s) 94, 162, 1076, 1246, 1317
PspPI GGNCC 1 cut(s) 1370
PspXI VCTCGAGB 1 cut(s) 282
PsuI RGATCY 5 cut(s) 160, 790, 1074, 1364, 1668
RsaI GTAC 3 cut(s) 192, 258, 1036
RsaNI GTAC 3 cut(s) 191, 257, 1035
SaqAI TTAA 6 cut(s) 173, 489, 566, 632, 957, 1659
SatI GCNGC 4 cut(s) 314, 870, 873, 876
Sau3AI GATC 7 cut(s) 160, 790, 1074, 1162, 1364, 1468, 1668
Sau96I GGNCC 1 cut(s) 1370
SchI GAGTC 4 cut(s) 460, 1051, 1163, 1526
ScrFI CCNGG 3 cut(s) 90, 289, 440
SduI GDGCHC 4 cut(s) 25, 289, 1198, 1499
SfaNI GCATC 2 cut(s) 493, 1578
Sfr274I CTCGAG 1 cut(s) 282
SlaI CTCGAG 1 cut(s) 282
SmlI CTYRAG 7 cut(s) 100, 282, 302, 346, 794, 1157, 1171
SmoI CTYRAG 7 cut(s) 100, 282, 302, 346, 794, 1157, 1171
SsiI CCGC 3 cut(s) 34, 313, 379
SspMI CTAG 2 cut(s) 1014, 1672
StyD4I CCNGG 3 cut(s) 88, 287, 438
TaaI ACNGT 7 cut(s) 993, 1007, 1039, 1147, 1421, 1595, 1631
TaiI ACGT 3 cut(s) 666, 718, 897
TaqI TCGA 7 cut(s) 283, 336, 414, 862, 1062, 1331, 1471
TaqII GACCGA 1 cut(s) 1192
TatI WGTACW 1 cut(s) 256
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 7 cut(s) 111, 263, 292, 641, 1059, 1213, 1540
Tru1I TTAA 6 cut(s) 173, 489, 566, 632, 957, 1659
Tru9I TTAA 6 cut(s) 173, 489, 566, 632, 957, 1659
TscAI CASTG 4 cut(s) 252, 998, 1306, 1523
TseFI GTSAC 2 cut(s) 1112, 1231
TseI GCWGC 3 cut(s) 869, 872, 875
Tsp45I GTSAC 2 cut(s) 1112, 1231
TspDTI ATGAA 9 cut(s) 227, 371, 555, 662, 740, 788, 927, 1395, 1574
TspRI CASTG 4 cut(s) 252, 998, 1306, 1523
VspI ATTAAT 1 cut(s) 566
XapI RAATTY 3 cut(s) 399, 902, 1029
XceI RCATGY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 282
XmnI GAANNNNTTC 2 cut(s) 110, 717
XspI CTAG 2 cut(s) 1014, 1672
ZraI GACGTC 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.