Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Forward (+)

16036722 .. 16042046

Gene Structure 5325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAGCACAATGTCTTGGAAGCTCAGAGGAGTGGAGCCACCTTCAAGAAACGCAGTGTCAAGAAGATGGACCATTTTGTTCTGCATTGCTTGTTTCTGTGCTGGGATGCTCTTCTCTGATAGAATGTGGTCAGTGCCGGAAATTAAAGGCATATCAAGGACAACAAGGGTTGACGGTGACAATCTGAAGTTAGTATCTGGTTGTGATCCCTCAATTAAGGAAGTAGACGAGGAATCAACTAATGTCTACGGGGAAGTTTCAAAGACTCATCATGCTATACAAACACTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAAGGCTGCTCAGGAATCTATACTTAACGGGTCTCCAGTTGCAGGAGATTTAAAATTCTCTGAGTCTACCAAGAAAAGAAAATATTTGATGGTTGTAGGAATCAATACTGCTTTTAGCAGTAGAAAGCGTAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGGCGATAAAAGAAAGAAGCTTGAGGAAGAAAAGGGAATTGTAGTTCGCTTTGTAATAGGTCACAGTGCCACATCAGGTGGTATCCTTGATAGAGCTGTTGAGGCTGAGGACAGAAGACATGGTGACATTATGCGGCTGGACCATGTGGAGGGTTACCTTGAATTATCAGCAAAGACCAAGACATTCTTTGCTACTGCTGTTTCTTCATGGGATGCAGAATTCTATGTCAAGGTTGATGATGATGTACATGTTAATATAGGAACACTTGGAACAACTTTAGGTAGGCATCGGTTAAAGCCCAGGGTGTACATTGGATGCATGAAATCCGGTCCCGTTCTTGCTCAAAAGGGAGTGAGGTATCATGAGCCTGAGTACTGGAAGTTTGGTGAGGAGGGGAATAAGTATTTTCGTCATGCCACTGGCCAGCTCTATGCTATCTCAAGAGACTTGGCTACTTACATATCCATCAACCAGCACGTTCTACACAAGTACGTCAATGAGGATGTTTCTCTGGGTTCATGGCTTCTTGGATTGGATGTGGAGCATATTGATGACCGAAGATTATGTTGCGGAACACCGCCTGATTGTGAATGGAAGGCTCAGGCAGGCAATGTCTGTGTTGCTTCATTCGATTGGAGTTGCAGCGGAATTTGCAAGTCTGTTGAGAGGATCAAAGAGGTCCATCGACGCTGTGGAGAAGGCGAGAATGCTTTGTGGAGTGCAGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

408

Amino Acids

45.68

Weight (kDa)

8.36

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	20 - 112	1.2e-33	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 349	1.3e-50	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	225, 246, 395
AciI	CCGC	4 cut(s)	625, 1062, 1070, 1137
AclWI	GGATC	2 cut(s)	200, 1169
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	4 cut(s)	304, 383, 710, 1140
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	4 cut(s)	738, 800, 866, 983
AfiI	CCNNNNNNNGG	2 cut(s)	371, 640
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	4 cut(s)	45, 261, 303, 653
AjnI	CCWGG	1 cut(s)	791
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	5 cut(s)	22, 326, 511, 587, 919
AluI	AGCT	5 cut(s)	22, 326, 511, 587, 919
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	366, 930
AlwI	GGATC	2 cut(s)	200, 1169
AoxI	GGCC	1 cut(s)	913
ApeKI	GCWGC	4 cut(s)	323, 326, 335, 1134
ApoI	RAATTY	4 cut(s)	304, 383, 710, 1140
AspS9I	GGNCC	4 cut(s)	69, 631, 821, 1171
AsuHPI	GGTGA	3 cut(s)	188, 626, 890
AvaII	GGWCC	4 cut(s)	69, 631, 821, 1171
BalI	TGGCCA	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	4 cut(s)	313, 322, 335, 1146
BccI	CCATC	5 cut(s)	60, 307, 412, 965, 1182
BciT130I	CCWGG	1 cut(s)	793
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	2 cut(s)	366, 930
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	5 cut(s)	324, 327, 336, 626, 1135
BlsI	GCNGC	5 cut(s)	325, 328, 337, 627, 1136
BmcAI	AGTACT	1 cut(s)	866
Bme1390I	CCNGG	1 cut(s)	793
Bme18I	GGWCC	4 cut(s)	69, 631, 821, 1171
BmgT120I	GGNCC	4 cut(s)	69, 631, 821, 1171
BmiI	GGNNCC	2 cut(s)	36, 823
BmrFI	CCNGG	1 cut(s)	793
BmsI	GCATC	5 cut(s)	96, 474, 694, 787, 797
BpiI	GAAGAC	1 cut(s)	613
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	3 cut(s)	339, 597, 1092
BpuEI	CTTGAG	3 cut(s)	474, 533, 916
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	791, 792
BsaWI	WCCGGW	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 640
Bse1I	ACTGG	4 cut(s)	291, 365, 872, 916
Bse3DI	GCAATG	2 cut(s)	84, 1108
BseBI	CCWGG	1 cut(s)	793
BseDI	CCNNGG	2 cut(s)	791, 792
BseGI	GGATG	6 cut(s)	111, 489, 709, 812, 1000, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	371, 640
BseMI	GCAATG	2 cut(s)	84, 1108
BseMII	CTCAG	6 cut(s)	37, 353, 381, 588, 852, 1106
BseNI	ACTGG	4 cut(s)	291, 365, 872, 916
BseRI	GAGGAG	2 cut(s)	42, 896
BseXI	GCAGC	4 cut(s)	313, 322, 335, 1146
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	137, 819
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	2 cut(s)	371, 640
BsmAI	GTCTC	2 cut(s)	366, 930
BsmFI	GGGAC	1 cut(s)	807
BsmI	GAATGC	1 cut(s)	1204
BsnI	GGCC	1 cut(s)	915
Bso31I	GGTCTC	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	2 cut(s)	736, 798
Bsp143I	GATC	2 cut(s)	205, 1161
BspACI	CCGC	4 cut(s)	625, 1062, 1070, 1137
BspANI	GGCC	1 cut(s)	915
BspCNI	CTCAG	6 cut(s)	36, 352, 382, 589, 853, 1105
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	2 cut(s)	36, 823
BspPI	GGATC	2 cut(s)	200, 1169
BspQI	GCTCTTC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	84, 1108
BsrGI	TGTACA	2 cut(s)	736, 798
BsrI	ACTGG	4 cut(s)	291, 365, 872, 916
BssECI	CCNNGG	2 cut(s)	791, 792
BssMI	GATC	2 cut(s)	205, 1161
Bst2UI	CCWGG	1 cut(s)	793
Bst4CI	ACNGT	2 cut(s)	176, 557
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	2 cut(s)	736, 798
BstC8I	GCNNGC	2 cut(s)	917, 1099
BstDEI	CTNAG	6 cut(s)	23, 339, 390, 597, 861, 1092
BstEII	GGTNACC	1 cut(s)	644
BstF5I	GGATG	6 cut(s)	111, 489, 709, 812, 1000, 1033
BstKTI	GATC	2 cut(s)	208, 1164
BstMAI	GTCTC	2 cut(s)	366, 930
BstMBI	GATC	2 cut(s)	205, 1161
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 335, 593, 1143
BstNI	CCWGG	1 cut(s)	793
BstNSI	RCATGY	1 cut(s)	743
BstPI	GGTNACC	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	791
BstV1I	GCAGC	4 cut(s)	313, 322, 335, 1146
BstV2I	GAAGAC	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	915
BtsCI	GGATG	6 cut(s)	111, 489, 709, 812, 1000, 1033
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	5 cut(s)	60, 138, 284, 562, 909
Cac8I	GCNNGC	2 cut(s)	917, 1099
CciI	TCATGA	1 cut(s)	853
Cfr13I	GGNCC	4 cut(s)	69, 631, 821, 1171
CseI	GACGC	1 cut(s)	1188
Csp6I	GTAC	4 cut(s)	737, 799, 865, 982
CviAII	CATG	9 cut(s)	272, 611, 635, 699, 740, 811, 854, 905, 1011
CviQI	GTAC	4 cut(s)	737, 799, 865, 982
DdeI	CTNAG	6 cut(s)	23, 339, 390, 597, 861, 1092
DpnI	GATC	2 cut(s)	207, 1163
DpnII	GATC	2 cut(s)	205, 1161
DraI	TTTAAA	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	366
Eco47I	GGWCC	4 cut(s)	69, 631, 821, 1171
Eco57I	CTGAAG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	644
EcoO65I	GGTNACC	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	791
EcoT22I	ATGCAT	1 cut(s)	812
FaeI	CATG	9 cut(s)	275, 614, 638, 702, 743, 814, 857, 908, 1014
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	9 cut(s)	271, 610, 634, 698, 739, 810, 853, 904, 1010
FblI	GTMKAC	3 cut(s)	225, 246, 395
Fnu4HI	GCNGC	5 cut(s)	324, 327, 336, 626, 1135
FokI	GGATG	6 cut(s)	118, 496, 716, 819, 1007, 1040
Fsp4HI	GCNGC	5 cut(s)	324, 327, 336, 626, 1135
GluI	GCNGC	5 cut(s)	324, 327, 336, 626, 1135
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	915
HapII	CCGG	2 cut(s)	137, 819
HgaI	GACGC	1 cut(s)	1188
Hin1II	CATG	9 cut(s)	275, 614, 638, 702, 743, 814, 857, 908, 1014
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	6 cut(s)	233, 265, 344, 392, 429, 464
HpaII	CCGG	2 cut(s)	137, 819
HphI	GGTGA	3 cut(s)	188, 626, 890
Hpy166II	GTNNAC	5 cut(s)	172, 226, 247, 396, 799
Hpy188I	TCNGA	4 cut(s)	26, 118, 186, 391
Hpy188III	TCNNGA	5 cut(s)	45, 60, 341, 854, 933
Hpy8I	GTNNAC	5 cut(s)	172, 226, 247, 396, 799
Hpy99I	CGWCG	1 cut(s)	1182
HpyAV	CCTTC	3 cut(s)	51, 1081, 1184
HpyCH4III	ACNGT	2 cut(s)	176, 557
HpyCH4IV	ACGT	2 cut(s)	969, 984
HpyCH4V	TGCA	8 cut(s)	84, 329, 371, 707, 810, 1134, 1146, 1214
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 335, 593, 1143
HpyF3I	CTNAG	6 cut(s)	23, 339, 390, 597, 861, 1092
HpySE526I	ACGT	2 cut(s)	969, 984
Hsp92II	CATG	9 cut(s)	275, 614, 638, 702, 743, 814, 857, 908, 1014
Kzo9I	GATC	2 cut(s)	205, 1161
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	34, 1033
Lsp1109I	GCAGC	4 cut(s)	313, 322, 335, 1146
LweI	GCATC	5 cut(s)	96, 474, 694, 787, 797
MaeII	ACGT	2 cut(s)	969, 984
MaeIII	GTNAC	4 cut(s)	176, 551, 614, 644
MalI	GATC	2 cut(s)	207, 1163
MboI	GATC	2 cut(s)	205, 1161
MboII	GAAGA	6 cut(s)	75, 103, 530, 618, 687, 1062
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	915
MluNI	TGGCCA	1 cut(s)	915
MlyI	GAGTC	2 cut(s)	259, 401
Mox20I	TGGCCA	1 cut(s)	915
Mph1103I	ATGCAT	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	7 cut(s)	144, 216, 354, 380, 744, 785, 1222
MslI	CAYNNNNRTG	1 cut(s)	1041
Msp20I	TGGCCA	1 cut(s)	915
MspA1I	CMGCKG	2 cut(s)	326, 1137
MspI	CCGG	2 cut(s)	137, 819
MspR9I	CCNGG	1 cut(s)	793
Mva1269I	GAATGC	1 cut(s)	1204
MvaI	CCWGG	1 cut(s)	793
MwoI	GCNNNNNNNGC	4 cut(s)	332, 335, 593, 1143
NdeII	GATC	2 cut(s)	205, 1161
NlaIII	CATG	9 cut(s)	275, 614, 638, 702, 743, 814, 857, 908, 1014
NlaIV	GGNNCC	2 cut(s)	36, 823
NmuCI	GTSAC	3 cut(s)	176, 551, 614
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	743
PagI	TCATGA	1 cut(s)	853
PasI	CCCWGGG	1 cut(s)	792
PciI	ACATGT	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	1204
PfeI	GAWTC	4 cut(s)	233, 344, 429, 464
PkrI	GCNGC	5 cut(s)	325, 328, 337, 627, 1136
PleI	GAGTC	2 cut(s)	259, 400
PpsI	GAGTC	2 cut(s)	259, 400
PscI	ACATGT	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	791
PspEI	GGTNACC	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	791
PspN4I	GGNNCC	2 cut(s)	36, 823
PspPI	GGNCC	4 cut(s)	69, 631, 821, 1171
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	738, 800, 866, 983
RsaNI	GTAC	4 cut(s)	737, 799, 865, 982
RseI	CAYNNNNRTG	1 cut(s)	1041
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	7 cut(s)	144, 216, 354, 380, 744, 785, 1222
SatI	GCNGC	5 cut(s)	324, 327, 336, 626, 1135
Sau3AI	GATC	2 cut(s)	205, 1161
Sau96I	GGNCC	4 cut(s)	69, 631, 821, 1171
ScaI	AGTACT	1 cut(s)	866
SchI	GAGTC	2 cut(s)	259, 401
ScrFI	CCNGG	1 cut(s)	793
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	96, 474, 694, 787, 797
SinI	GGWCC	4 cut(s)	69, 631, 821, 1171
SmiMI	CAYNNNNRTG	1 cut(s)	1041
SmlI	CTYRAG	3 cut(s)	489, 512, 931
SmoI	CTYRAG	3 cut(s)	489, 512, 931
SsiI	CCGC	4 cut(s)	625, 1062, 1070, 1137
SspI	AATATT	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	791
TaaI	ACNGT	2 cut(s)	176, 557
TaiI	ACGT	2 cut(s)	972, 987
TaqI	TCGA	2 cut(s)	1122, 1177
TaqII	GACCGA	1 cut(s)	1062
TatI	WGTACW	3 cut(s)	736, 798, 864
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	4 cut(s)	233, 344, 429, 464
Tru1I	TTAA	7 cut(s)	144, 216, 354, 380, 744, 785, 1222
Tru9I	TTAA	7 cut(s)	144, 216, 354, 380, 744, 785, 1222
TscAI	CASTG	5 cut(s)	60, 138, 291, 562, 916
TseFI	GTSAC	3 cut(s)	176, 551, 614
TseI	GCWGC	4 cut(s)	323, 326, 335, 1134
Tsp45I	GTSAC	3 cut(s)	176, 551, 614
TspDTI	ATGAA	4 cut(s)	687, 827, 999, 1107
TspRI	CASTG	5 cut(s)	60, 138, 291, 562, 916
VpaK11BI	GGWCC	4 cut(s)	69, 631, 821, 1171
XapI	RAATTY	4 cut(s)	304, 383, 710, 1140
XceI	RCATGY	1 cut(s)	743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1181
XmiI	GTMKAC	3 cut(s)	225, 246, 395
ZrmI	AGTACT	1 cut(s)	866
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.