Rw5G025340

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0009796
Physical Location & Seq
Forward (+)
36042964 .. 36047842
4879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025340.1

Sequence Viewer

Length: 912 bp
ATGGAATTAGCAGCTGCAAAGGCTGCTCAGGAATCTATACTTAACGGGTCACCGGTTGCAGGAGATTTAAAAGTCTCTGAGTCCACCAAGAAAAGAAAATATTTGATGGTTGTCGGAATCAATACTGCTTTTAGCAGTAGAAAGCGTAGAGATTCAGTCCGTACTACTTGGATGCCTCAAGGCGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGAATTGTAGTTCGCTTTGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTGTTGAGGCCGAGGACAAAAGACATGGCGACATTATGCGGCTGGACCATGTTGAGGGTTACCTCGAATTATCAGCAAAGACCAAGATATTTTTTGCTACTGCTGTTACTTCATGGGATGCAGAGTTCTATGTCAAAGTTGATGATGATGTACATGTAAATATAGGAACACTTGGAGCAACTTTAGCTAGACATCGGTCAAAGCCCAGGGTGTACATTGGATGCATGAAATCCGGTCCCGTCCTTGCTCAAAAGGGAGTGAGGTATCATGAGCCCGAGTACTGGAAGTTCGGCGAGGAAGGGAACAAGTATTTTCGTCATGCCACCGGCCAGCTCTATGCTATCTCAAGAGACTTGGCTACTTACATCTCCATCAACCAGCATGTTCTACACAAGTATGTCAATGAGGATGTTTCTCTGGGTTCATGGTTACTGGGATTGGATGTGGAGCATATTGATGACCGAAGATTATGTTGTGGAACACCGCCTGATTGTGAATGGAAGGCCCAGGCTGGCAATGTCTGTGTTGCTTCATTTGATTGGACTTGTAGCGGGATTTGCAAGTCTGCTGAGAGGATCAAAGAGGTCCATCGACGCTGTGGAGAAGGCGAGAATGCTTTGTGGAGTGCAGTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4094 Galactosyl_T

Protein Analysis

303

Amino Acids

33.94

Weight (kDa)

8.52

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 48 - 245 7.7e-51 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 313, 758, 825
AclWI GGATC 1 cut(s) 857
AcoI YGGCCR 1 cut(s) 601
AfaI GTAC 4 cut(s) 163, 426, 488, 554
AfiI CCNNNNNNNGG 3 cut(s) 59, 328, 555
AflIII ACRYGT 1 cut(s) 427
AgeI ACCGGT 1 cut(s) 52
AjnI CCWGG 2 cut(s) 479, 780
AloI GAACNNNNNNTCC 4 cut(s) 207, 239, 383, 415
AluBI AGCT 5 cut(s) 14, 199, 275, 461, 607
AluI AGCT 5 cut(s) 14, 199, 275, 461, 607
Alw26I GTCTC 2 cut(s) 79, 618
AlwI GGATC 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 3 cut(s) 282, 601, 777
ApeKI GCWGC 3 cut(s) 11, 14, 23
AsiGI ACCGGT 1 cut(s) 52
AspS9I GGNCC 4 cut(s) 319, 509, 778, 859
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 3 cut(s) 319, 509, 859
BanII GRGCYC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 10, 23
BccI CCATC 3 cut(s) 100, 653, 870
BciT130I CCWGG 2 cut(s) 481, 782
BciVI GTATCC 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 79, 618
BfaI CTAG 1 cut(s) 462
BfuI GTATCC 1 cut(s) 272
BisI GCNGC 4 cut(s) 12, 15, 24, 314
BlsI GCNGC 4 cut(s) 13, 16, 25, 315
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 2 cut(s) 481, 782
Bme18I GGWCC 3 cut(s) 319, 509, 859
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 4 cut(s) 319, 509, 778, 859
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 2 cut(s) 481, 782
BmrI ACTGGG 1 cut(s) 716
BmsI GCATC 3 cut(s) 162, 382, 485
BmuI ACTGGG 1 cut(s) 716
BoxI GACNNNNGTC 1 cut(s) 469
Bpu10I CCTNAGC 1 cut(s) 27
BpuEI CTTGAG 3 cut(s) 162, 221, 604
BsaJI CCNNGG 4 cut(s) 285, 479, 480, 780
BsaWI WCCGGW 2 cut(s) 52, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 328, 555
Bse118I RCCGGY 2 cut(s) 52, 599
Bse1I ACTGG 2 cut(s) 560, 711
Bse3DI GCAATG 1 cut(s) 796
BseBI CCWGG 2 cut(s) 481, 782
BseDI CCNNGG 4 cut(s) 285, 479, 480, 780
BseGI GGATG 5 cut(s) 177, 397, 500, 688, 721
BseLI CCNNNNNNNGG 3 cut(s) 59, 328, 555
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 3 cut(s) 41, 69, 834
BseNI ACTGG 2 cut(s) 560, 711
BseXI GCAGC 2 cut(s) 10, 23
BshFI GGCC 3 cut(s) 284, 603, 779
BshTI ACCGGT 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 3 cut(s) 53, 507, 600
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 3 cut(s) 59, 328, 555
BsmAI GTCTC 2 cut(s) 79, 618
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 3 cut(s) 284, 603, 779
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 549
Bsp1407I TGTACA 2 cut(s) 424, 486
Bsp143I GATC 1 cut(s) 849
BspACI CCGC 3 cut(s) 313, 758, 825
BspANI GGCC 3 cut(s) 284, 603, 779
BspCNI CTCAG 3 cut(s) 40, 70, 835
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 1 cut(s) 511
BspPI GGATC 1 cut(s) 857
BsrDI GCAATG 1 cut(s) 796
BsrFI RCCGGY 2 cut(s) 52, 599
BsrGI TGTACA 2 cut(s) 424, 486
BsrI ACTGG 2 cut(s) 560, 711
BssAI RCCGGY 2 cut(s) 52, 599
BssECI CCNNGG 4 cut(s) 285, 479, 480, 780
BssMI GATC 1 cut(s) 849
Bst2UI CCWGG 2 cut(s) 481, 782
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 23
BstAUI TGTACA 2 cut(s) 424, 486
BstC8I GCNNGC 2 cut(s) 605, 787
BstDEI CTNAG 3 cut(s) 27, 78, 843
BstEII GGTNACC 2 cut(s) 48, 332
BstF5I GGATG 5 cut(s) 177, 397, 500, 688, 721
BstKTI GATC 1 cut(s) 852
BstMAI GTCTC 2 cut(s) 79, 618
BstMBI GATC 1 cut(s) 849
BstMWI GCNNNNNNNGC 5 cut(s) 20, 23, 281, 458, 831
BstNI CCWGG 2 cut(s) 481, 782
BstNSI RCATGY 2 cut(s) 431, 659
BstPAI GACNNNNGTC 1 cut(s) 469
BstPI GGTNACC 2 cut(s) 48, 332
BstSCI CCNGG 2 cut(s) 479, 780
BstV1I GCAGC 2 cut(s) 10, 23
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 3 cut(s) 284, 603, 779
BtsCI GGATG 5 cut(s) 177, 397, 500, 688, 721
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 605, 787
CciI TCATGA 1 cut(s) 541
Cfr10I RCCGGY 2 cut(s) 52, 599
Cfr13I GGNCC 4 cut(s) 319, 509, 778, 859
CseI GACGC 1 cut(s) 876
Csp6I GTAC 4 cut(s) 162, 425, 487, 553
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 9 cut(s) 299, 323, 387, 428, 499, 542, 593, 656, 699
CviQI GTAC 4 cut(s) 162, 425, 487, 553
DdeI CTNAG 3 cut(s) 27, 78, 843
DpnI GATC 1 cut(s) 851
DpnII GATC 1 cut(s) 849
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 549
Eco47I GGWCC 3 cut(s) 319, 509, 859
Eco88I CYCGRG 1 cut(s) 548
Eco91I GGTNACC 2 cut(s) 48, 332
EcoO65I GGTNACC 2 cut(s) 48, 332
EcoRII CCWGG 2 cut(s) 479, 780
EcoT22I ATGCAT 1 cut(s) 500
EcoT38I GRGCYC 1 cut(s) 549
FaeI CATG 9 cut(s) 302, 326, 390, 431, 502, 545, 596, 659, 702
FaqI GGGAC 1 cut(s) 495
FatI CATG 9 cut(s) 298, 322, 386, 427, 498, 541, 592, 655, 698
FauI CCCGC 1 cut(s) 818
Fnu4HI GCNGC 4 cut(s) 12, 15, 24, 314
FokI GGATG 5 cut(s) 184, 404, 507, 695, 728
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 4 cut(s) 12, 15, 24, 314
FspBI CTAG 1 cut(s) 462
GluI GCNGC 4 cut(s) 12, 15, 24, 314
HaeIII GGCC 3 cut(s) 284, 603, 779
HapII CCGG 3 cut(s) 53, 507, 600
HgaI GACGC 1 cut(s) 876
Hin1II CATG 9 cut(s) 302, 326, 390, 431, 502, 545, 596, 659, 702
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 32, 80, 117, 152
HpaII CCGG 3 cut(s) 53, 507, 600
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 84, 487
Hpy188I TCNGA 2 cut(s) 79, 116
Hpy188III TCNNGA 3 cut(s) 29, 542, 621
Hpy8I GTNNAC 2 cut(s) 84, 487
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 4 cut(s) 205, 566, 769, 872
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 6 cut(s) 17, 59, 395, 498, 834, 902
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 23, 281, 458, 831
HpyF3I CTNAG 3 cut(s) 27, 78, 843
Hsp92II CATG 9 cut(s) 302, 326, 390, 431, 502, 545, 596, 659, 702
Kzo9I GATC 1 cut(s) 849
LmnI GCTCC 2 cut(s) 449, 721
Lsp1109I GCAGC 2 cut(s) 10, 23
LweI GCATC 3 cut(s) 162, 382, 485
MaeI CTAG 1 cut(s) 462
MaeIII GTNAC 5 cut(s) 48, 239, 332, 379, 702
MalI GATC 1 cut(s) 851
MboI GATC 1 cut(s) 849
MboII GAAGA 2 cut(s) 218, 750
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 3 cut(s) 5, 216, 341
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 500
MseI TTAA 2 cut(s) 42, 68
MslI CAYNNNNRTG 2 cut(s) 669, 729
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 3 cut(s) 53, 507, 600
MspR9I CCNGG 2 cut(s) 481, 782
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 2 cut(s) 481, 782
MwoI GCNNNNNNNGC 5 cut(s) 20, 23, 281, 458, 831
NdeII GATC 1 cut(s) 849
NlaIII CATG 9 cut(s) 302, 326, 390, 431, 502, 545, 596, 659, 702
NlaIV GGNNCC 1 cut(s) 511
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 48, 239
NsiI ATGCAT 1 cut(s) 500
NspI RCATGY 2 cut(s) 431, 659
PagI TCATGA 1 cut(s) 541
PasI CCCWGGG 1 cut(s) 480
PciI ACATGT 1 cut(s) 427
PctI GAATGC 1 cut(s) 892
PfeI GAWTC 3 cut(s) 32, 117, 152
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 4 cut(s) 13, 16, 25, 315
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 427
PshAI GACNNNNGTC 1 cut(s) 469
Psp6I CCWGG 2 cut(s) 479, 780
PspEI GGTNACC 2 cut(s) 48, 332
PspGI CCWGG 2 cut(s) 479, 780
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 4 cut(s) 319, 509, 778, 859
PsrI GAACNNNNNNTAC 2 cut(s) 545, 577
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 4 cut(s) 163, 426, 488, 554
RsaNI GTAC 4 cut(s) 162, 425, 487, 553
RseI CAYNNNNRTG 2 cut(s) 669, 729
SaqAI TTAA 2 cut(s) 42, 68
SatI GCNGC 4 cut(s) 12, 15, 24, 314
Sau3AI GATC 1 cut(s) 849
Sau96I GGNCC 4 cut(s) 319, 509, 778, 859
ScaI AGTACT 1 cut(s) 554
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 481, 782
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 3 cut(s) 162, 382, 485
SinI GGWCC 3 cut(s) 319, 509, 859
SmiMI CAYNNNNRTG 2 cut(s) 669, 729
SmlI CTYRAG 3 cut(s) 177, 200, 619
SmoI CTYRAG 3 cut(s) 177, 200, 619
Sse9I AATT 3 cut(s) 5, 216, 341
SsiI CCGC 3 cut(s) 313, 758, 825
SspI AATATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 479, 780
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 339, 865
TaqII GACCGA 2 cut(s) 459, 750
TasI AATT 3 cut(s) 5, 216, 341
TatI WGTACW 3 cut(s) 424, 486, 552
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 3 cut(s) 32, 117, 152
Tru1I TTAA 2 cut(s) 42, 68
Tru9I TTAA 2 cut(s) 42, 68
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 48, 239
TseI GCWGC 3 cut(s) 11, 14, 23
Tsp45I GTSAC 2 cut(s) 48, 239
TspDTI ATGAA 4 cut(s) 375, 515, 687, 795
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 3 cut(s) 319, 509, 859
XceI RCATGY 2 cut(s) 431, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XspI CTAG 1 cut(s) 462
ZrmI AGTACT 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.