Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Forward (+)

13450041 .. 13455047

Gene Structure 5007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G215100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTCTTGGAAGAGCAGAGGAGCCGAGTCAGCTTCAAAGAGTGCAGTGTCTCGGAAATGGACCATTTTGTTTTGTATTGGTTGCTTTTGTGCTGGGATGCTCTTCTCTGATAGAATGTGGTCAGTGCCTGAAATTAAAGGCATAGCGAGGACGGCAAGGCATGAAGAAGAAACACTGCAATTAGTTTCTGGCTGTGATCCAACAATTAAGGATGTAGAACATGAACAGAAGGATGTTTATGGGGAAGTTTCAAAGACTCATCATGCTATACACACACTGGATAAAAAAATTTCAAATTTGGAGATGGAATTAGCTGCTGCAAGGGCTGCACAGGAATCTATACTTAATGGTTCACCTATTGCAGAAAATTTAAAAATTCCGGAGACAAGAAAGAAAAGAAAATATCTAATGGTCGTAGGAATAAATACTGCTTTTAGCAGTCGAAAGCGCAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGGCGATAAAAGAAAGAAGCTTGAGGAAGAAAAGGGCATTGTAATTCGCTTTGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTGTTGAAGCAGAGGATAAAAAACATGGTGACATTTTGCGGCTGGATCATGTTGAGGGCTATCTTGAATTGTCAGCAAAGACGAAGATCTTTTTTGCCACTGCTGTTGCTTCATGGGATGCAGATTTCTACGTCAAAGTTGATGATGATGTACATGTAAATATAGGAACACTTGGAGCAACTTTAGCTAGACATAGATCAAACCCCAGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCCTTGCTCGAAAGGGAGTGAGATATCATGAGCCTGAGTATTGGAAATTTGGCGAGGAAGGGAACAAATATTTCCGTCATGCCACAGGACAGCTCTATGCTATCTCAAAAGACTTGGCTACTTACATATCAATCAACCAGCATGTGCTACACAAGTATGCCAATGAGGATGTTTCTCTGGGGTCGTGGTTCATTGGATTGGATGTGGAGCAGATTGATGACCGAAGATTATGTTGTGGAACACCACCTGATTGTGAATGGAAGGCTCAGGCAGGCAATGTCTGTGTTGCTTCGTTCGATTGGAGTTGCAGTGGAATCTGCAAGTCTTCCGAGAGGATCAAGGAGGTCCATCGGCGCTGTGGAGAAGGTGAGAATGCTTTGTGGAATGCAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

405

Amino Acids

45.41

Weight (kDa)

8.48

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	1 cut(s)	616
AclWI	GGATC	3 cut(s)	191, 630, 1160
AcsI	RAATTY	5 cut(s)	288, 295, 367, 375, 863
AfaI	GTAC	1 cut(s)	729
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	5 cut(s)	36, 252, 294, 584, 644
AjnI	CCWGG	1 cut(s)	782
AluBI	AGCT	6 cut(s)	32, 314, 502, 578, 764, 910
AluI	AGCT	6 cut(s)	32, 314, 502, 578, 764, 910
Alw26I	GTCTC	2 cut(s)	54, 377
AlwI	GGATC	3 cut(s)	191, 630, 1160
AlwNI	CAGNNNCTG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	379
ApeKI	GCWGC	3 cut(s)	314, 317, 326
ApoI	RAATTY	5 cut(s)	288, 295, 367, 375, 863
AspLEI	GCGC	2 cut(s)	450, 1173
AspS9I	GGNCC	3 cut(s)	60, 812, 1162
AsuHPI	GGTGA	3 cut(s)	345, 617, 1196
AvaII	GGWCC	3 cut(s)	60, 812, 1162
BbsI	GAAGAC	1 cut(s)	1134
BbvI	GCAGC	3 cut(s)	301, 304, 313
BccI	CCATC	2 cut(s)	298, 1173
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	784
BciVI	GTATCC	1 cut(s)	575
BcoDI	GTCTC	2 cut(s)	54, 377
BfaI	CTAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	1174
BfuI	GTATCC	1 cut(s)	575
BglII	AGATCT	1 cut(s)	663
BisI	GCNGC	4 cut(s)	315, 318, 327, 617
BlsI	GCNGC	4 cut(s)	316, 319, 328, 618
Bme1390I	CCNGG	1 cut(s)	784
Bme18I	GGWCC	3 cut(s)	60, 812, 1162
BmgT120I	GGNCC	3 cut(s)	60, 812, 1162
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	784
BmsI	GCATC	4 cut(s)	87, 465, 685, 788
BpiI	GAAGAC	1 cut(s)	1134
Bpu10I	CCTNAGC	1 cut(s)	1083
BpuEI	CTTGAG	2 cut(s)	465, 524
BsaJI	CCNNGG	2 cut(s)	782, 783
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	1111, 1141
Bse1I	ACTGG	2 cut(s)	282, 815
Bse3DI	GCAATG	1 cut(s)	1099
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	784
BseDI	CCNNGG	2 cut(s)	782, 783
BseGI	GGATG	8 cut(s)	102, 217, 238, 480, 700, 803, 991, 1024
BseMI	GCAATG	1 cut(s)	1099
BseMII	CTCAG	2 cut(s)	843, 1097
BseNI	ACTGG	2 cut(s)	282, 815
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	301, 304, 313
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	2 cut(s)	63, 312
BsiSI	CCGG	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	54, 377
BsmI	GAATGC	2 cut(s)	1195, 1207
Bsp13I	TCCGGA	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	5 cut(s)	196, 622, 663, 773, 1152
BspACI	CCGC	1 cut(s)	616
BspCNI	CTCAG	2 cut(s)	844, 1096
BspEI	TCCGGA	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	3 cut(s)	191, 630, 1160
BspQI	GCTCTTC	2 cut(s)	5, 107
BsrDI	GCAATG	1 cut(s)	1099
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	282, 815
BssECI	CCNNGG	2 cut(s)	782, 783
BssMI	GATC	5 cut(s)	196, 622, 663, 773, 1152
Bst2UI	CCWGG	1 cut(s)	784
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	2 cut(s)	5, 107
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	727
BstC8I	GCNNGC	1 cut(s)	1090
BstDEI	CTNAG	2 cut(s)	852, 1083
BstF5I	GGATG	8 cut(s)	102, 217, 238, 480, 700, 803, 991, 1024
BstH2I	RGCGCY	1 cut(s)	1174
BstHHI	GCGC	2 cut(s)	450, 1173
BstKTI	GATC	5 cut(s)	199, 625, 666, 776, 1155
BstMAI	GTCTC	2 cut(s)	54, 377
BstMBI	GATC	5 cut(s)	196, 622, 663, 773, 1152
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 152, 323, 326, 584, 761
BstNI	CCWGG	1 cut(s)	784
BstNSI	RCATGY	2 cut(s)	734, 962
BstSCI	CCNGG	1 cut(s)	782
BstV1I	GCAGC	3 cut(s)	301, 304, 313
BstV2I	GAAGAC	1 cut(s)	1134
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuI	GTATCC	1 cut(s)	575
BtsCI	GGATG	8 cut(s)	102, 217, 238, 480, 700, 803, 991, 1024
BtsI	GCAGTG	4 cut(s)	51, 173, 675, 1132
BtsIMutI	CAGTG	7 cut(s)	51, 129, 173, 275, 553, 675, 1132
Cac8I	GCNNGC	1 cut(s)	1090
CaiI	CAGNNNCTG	1 cut(s)	128
CciI	TCATGA	1 cut(s)	844
CfoI	GCGC	2 cut(s)	450, 1173
Cfr13I	GGNCC	3 cut(s)	60, 812, 1162
Csp6I	GTAC	1 cut(s)	728
CspCI	CAANNNNNGTGG	2 cut(s)	664, 699
CviQI	GTAC	1 cut(s)	728
DdeI	CTNAG	2 cut(s)	852, 1083
DpnI	GATC	5 cut(s)	198, 624, 665, 775, 1154
DpnII	GATC	5 cut(s)	196, 622, 663, 773, 1152
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	5, 107
EarI	CTCTTC	2 cut(s)	5, 107
Eco32I	GATATC	1 cut(s)	842
Eco47I	GGWCC	3 cut(s)	60, 812, 1162
EcoRII	CCWGG	1 cut(s)	782
EcoRV	GATATC	1 cut(s)	842
EcoT22I	ATGCAT	1 cut(s)	803
Fnu4HI	GCNGC	4 cut(s)	315, 318, 327, 617
FokI	GGATG	8 cut(s)	109, 224, 245, 487, 707, 810, 998, 1031
Fsp4HI	GCNGC	4 cut(s)	315, 318, 327, 617
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	2 cut(s)	449, 1172
GluI	GCNGC	4 cut(s)	315, 318, 327, 617
GsaI	CCCAGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	1174
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	2 cut(s)	450, 1173
Hin6I	GCGC	2 cut(s)	448, 1171
HinP1I	GCGC	2 cut(s)	448, 1171
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	5 cut(s)	26, 256, 335, 455, 1131
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	345, 617, 1196
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	3 cut(s)	54, 109, 1147
Hpy188III	TCNNGA	3 cut(s)	380, 641, 845
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	223, 869, 1072, 1175
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	1 cut(s)	708
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 152, 323, 326, 584, 761
HpyF3I	CTNAG	2 cut(s)	852, 1083
HpySE526I	ACGT	1 cut(s)	708
HspAI	GCGC	2 cut(s)	448, 1171
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	196, 622, 663, 773, 1152
LguI	GCTCTTC	2 cut(s)	5, 107
LmnI	GCTCC	3 cut(s)	20, 752, 1024
Lsp1109I	GCAGC	3 cut(s)	301, 304, 313
LweI	GCATC	4 cut(s)	87, 465, 685, 788
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	542, 605
MalI	GATC	5 cut(s)	198, 624, 665, 775, 1154
MboI	GATC	5 cut(s)	196, 622, 663, 773, 1152
MboII	GAAGA	8 cut(s)	22, 94, 176, 179, 521, 673, 1053, 1134
MflI	RGATCY	1 cut(s)	663
MlyI	GAGTC	2 cut(s)	35, 250
MmeI	TCCRAC	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	803
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	4 cut(s)	135, 207, 345, 371
MslI	CAYNNNNRTG	1 cut(s)	972
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	784
Mva1269I	GAATGC	2 cut(s)	1195, 1207
MvaI	CCWGG	1 cut(s)	784
MwoI	GCNNNNNNNGC	6 cut(s)	29, 152, 323, 326, 584, 761
NdeII	GATC	5 cut(s)	196, 622, 663, 773, 1152
NlaIV	GGNNCC	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	542, 605
NsiI	ATGCAT	1 cut(s)	803
NspI	RCATGY	2 cut(s)	734, 962
PagI	TCATGA	1 cut(s)	844
PasI	CCCWGGG	1 cut(s)	783
PciI	ACATGT	1 cut(s)	730
PciSI	GCTCTTC	2 cut(s)	5, 107
PctI	GAATGC	2 cut(s)	1195, 1207
PfeI	GAWTC	3 cut(s)	335, 455, 1131
PkrI	GCNGC	4 cut(s)	316, 319, 328, 618
PleI	GAGTC	2 cut(s)	34, 250
PpsI	GAGTC	2 cut(s)	34, 250
PscI	ACATGT	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	782
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	3 cut(s)	60, 812, 1162
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	1 cut(s)	729
RsaNI	GTAC	1 cut(s)	728
RseI	CAYNNNNRTG	1 cut(s)	972
SapI	GCTCTTC	2 cut(s)	5, 107
SaqAI	TTAA	4 cut(s)	135, 207, 345, 371
SatI	GCNGC	4 cut(s)	315, 318, 327, 617
Sau3AI	GATC	5 cut(s)	196, 622, 663, 773, 1152
Sau96I	GGNCC	3 cut(s)	60, 812, 1162
SchI	GAGTC	2 cut(s)	35, 250
ScrFI	CCNGG	1 cut(s)	784
SfaNI	GCATC	4 cut(s)	87, 465, 685, 788
SinI	GGWCC	3 cut(s)	60, 812, 1162
SmiMI	CAYNNNNRTG	1 cut(s)	972
SmlI	CTYRAG	2 cut(s)	480, 503
SmoI	CTYRAG	2 cut(s)	480, 503
SsiI	CCGC	1 cut(s)	616
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	782
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	3 cut(s)	442, 826, 1113
TaqII	GACCGA	1 cut(s)	1053
TatI	WGTACW	1 cut(s)	727
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	3 cut(s)	335, 455, 1131
Tru1I	TTAA	4 cut(s)	135, 207, 345, 371
Tru9I	TTAA	4 cut(s)	135, 207, 345, 371
TscAI	CASTG	7 cut(s)	51, 129, 180, 282, 553, 682, 1132
TseFI	GTSAC	2 cut(s)	542, 605
TseI	GCWGC	3 cut(s)	314, 317, 326
Tsp45I	GTSAC	2 cut(s)	542, 605
TspDTI	ATGAA	5 cut(s)	177, 237, 678, 818, 997
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	7 cut(s)	51, 129, 180, 282, 553, 682, 1132
VpaK11BI	GGWCC	3 cut(s)	60, 812, 1162
XapI	RAATTY	5 cut(s)	288, 295, 367, 375, 863
XceI	RCATGY	2 cut(s)	734, 962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1172
XspI	CTAG	1 cut(s)	765
Zsp2I	ATGCAT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.