Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Forward (+)

34782548 .. 34786845

Gene Structure 4298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAGCACAATGTCTTGGAAGCTGAGAGGAGCAGAGCCAGCTTCAAGGAGTGCAGTGTCTCGAAGATGGACCATTTTGTTTTGTATTGCTTGTTTCTGTGCTGGGATGCTCTTCTCTGATAGAATGTGGTCAGTGCCGGAAATAAAAGGCATATCAAGGACAACAAGGGTTGACGGTGACAATCTGAAGTTAGTATCTGGTTGTGATCCATCCAATAAGGATGTAGAACAGGAACCAACTGATGTTTATGGGGAAGTTTCAAAGACTCATCATGCTATACAAACACTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAAGGCTGCTCAGGAGTCTATACTTAACGGGTCACCGATTGCAGGAGATTTAAAAATCTCTGAGTCCACCAAGAAAAGAAAATATTTGATGGTTGTCGGAATCAATACTGCTTTTAGCAGTAGAAAGCGTAGAGATTCAATTCGTACTACTTGGATGCCTCAAGGCGATAAAAGGAAAAAGCTTGAGGAAGAGAAGGGAATTGTAGTTCGCTTTGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTGTTGAGGCTGAGGACAAAAGACATGGTGACATTATGCGGCTGGACCATGTTGAGGGTTACCTCGAATTATCAGCAAAGACCAAGATATTTTTTGCTACTGCTGTTACTTCATGGGATGCAGAGTTCTATGTCAAAGTTGATGATGATGTACATGTAAATATAGGAACACTTGGAGCGACTTTAGCTAGACATCGGTCAAAGCCCAGGGTGTACATTGGATGCATGAAATCCGGTCCCGTCCTTGCTCAAAAGGGAGTGAGGTATCATGAGCCCGAGTACTGGAAGTTTGGCGAGGAAGGGAACAAGTATTTTCGTCATGCCACCGGCCAGCTCTATGCTATCTCAAGAGACTTGGCTACTTACATCTCCATCAACCAACATGTTCTACACAAGTATGTCAATGAGGATGTTTCTCTGGGTTCATGGTTACTGGGATTGGATGTGGAGCATATTGATGACCGAAGATTATGTTGTGGAACACCGCCTGATTGTGAATGGAAGGCCCAGGCAGGCAATGTCTGTGTTGCTTCATTTGATTGGAGTTGTAGCGGGATTTGCAAGTCTGCCGAGAGGATCAAAGAGGTCCATCGACGCTGTGGAGAAGGCGAGAATGCTTTGTGGAGTGCAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

408

Amino Acids

45.56

Weight (kDa)

8.35

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	20 - 112	1e-34	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 349	3.8e-51	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	625, 1070, 1137
AclWI	GGATC	2 cut(s)	200, 1169
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	4 cut(s)	475, 738, 800, 866
AfiI	CCNNNNNNNGG	3 cut(s)	371, 640, 867
AflIII	ACRYGT	2 cut(s)	739, 967
AgsI	TTSAA	4 cut(s)	45, 261, 303, 468
AjnI	CCWGG	2 cut(s)	791, 1092
AloI	GAACNNNNNNTCC	4 cut(s)	519, 551, 695, 727
AluBI	AGCT	7 cut(s)	22, 41, 326, 511, 587, 773, 919
AluI	AGCT	7 cut(s)	22, 41, 326, 511, 587, 773, 919
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	63, 930
AlwI	GGATC	2 cut(s)	200, 1169
Ama87I	CYCGRG	1 cut(s)	860
AoxI	GGCC	2 cut(s)	913, 1089
ApeKI	GCWGC	3 cut(s)	323, 326, 335
ApoI	RAATTY	1 cut(s)	304
AspS9I	GGNCC	5 cut(s)	69, 631, 821, 1090, 1171
AsuHPI	GGTGA	3 cut(s)	188, 354, 626
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	4 cut(s)	69, 631, 821, 1171
BanII	GRGCYC	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	313, 322, 335
BccI	CCATC	6 cut(s)	60, 217, 307, 412, 965, 1182
BciT130I	CCWGG	2 cut(s)	793, 1094
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	2 cut(s)	63, 930
BfaI	CTAG	1 cut(s)	774
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	4 cut(s)	324, 327, 336, 626
BlsI	GCNGC	4 cut(s)	325, 328, 337, 627
BmcAI	AGTACT	1 cut(s)	866
Bme1390I	CCNGG	2 cut(s)	793, 1094
Bme18I	GGWCC	4 cut(s)	69, 631, 821, 1171
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	5 cut(s)	69, 631, 821, 1090, 1171
BmiI	GGNNCC	2 cut(s)	234, 823
BmrFI	CCNGG	2 cut(s)	793, 1094
BmrI	ACTGGG	1 cut(s)	1028
BmsI	GCATC	4 cut(s)	96, 474, 694, 797
BmuI	ACTGGG	1 cut(s)	1028
BoxI	GACNNNNGTC	1 cut(s)	781
Bpu10I	CCTNAGC	2 cut(s)	339, 597
BpuEI	CTTGAG	3 cut(s)	474, 533, 916
BsaJI	CCNNGG	3 cut(s)	791, 792, 1092
BsaWI	WCCGGW	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 640, 867
Bse118I	RCCGGY	1 cut(s)	911
Bse1I	ACTGG	3 cut(s)	291, 872, 1023
Bse3DI	GCAATG	1 cut(s)	1108
BseBI	CCWGG	2 cut(s)	793, 1094
BseDI	CCNNGG	3 cut(s)	791, 792, 1092
BseGI	GGATG	8 cut(s)	111, 209, 226, 489, 709, 812, 1000, 1033
BseLI	CCNNNNNNNGG	3 cut(s)	371, 640, 867
BseMI	GCAATG	1 cut(s)	1108
BseMII	CTCAG	4 cut(s)	14, 353, 381, 588
BseNI	ACTGG	3 cut(s)	291, 872, 1023
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	313, 322, 335
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	915, 1091
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	3 cut(s)	137, 819, 912
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	3 cut(s)	371, 640, 867
BsmAI	GTCTC	2 cut(s)	63, 930
BsmFI	GGGAC	1 cut(s)	807
BsmI	GAATGC	1 cut(s)	1204
BsnI	GGCC	2 cut(s)	915, 1091
BsoBI	CYCGRG	1 cut(s)	860
Bsp1286I	GDGCHC	2 cut(s)	8, 861
Bsp1407I	TGTACA	2 cut(s)	736, 798
Bsp143I	GATC	2 cut(s)	205, 1161
BspACI	CCGC	3 cut(s)	625, 1070, 1137
BspANI	GGCC	2 cut(s)	915, 1091
BspCNI	CTCAG	4 cut(s)	15, 352, 382, 589
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	2 cut(s)	234, 823
BspPI	GGATC	2 cut(s)	200, 1169
BspQI	GCTCTTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	1108
BsrFI	RCCGGY	1 cut(s)	911
BsrGI	TGTACA	2 cut(s)	736, 798
BsrI	ACTGG	3 cut(s)	291, 872, 1023
BssAI	RCCGGY	1 cut(s)	911
BssECI	CCNNGG	3 cut(s)	791, 792, 1092
BssMI	GATC	2 cut(s)	205, 1161
Bst2UI	CCWGG	2 cut(s)	793, 1094
Bst4CI	ACNGT	2 cut(s)	176, 557
Bst6I	CTCTTC	2 cut(s)	116, 513
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	2 cut(s)	736, 798
BstC8I	GCNNGC	3 cut(s)	39, 917, 1099
BstDEI	CTNAG	4 cut(s)	23, 339, 390, 597
BstEII	GGTNACC	2 cut(s)	360, 644
BstF5I	GGATG	8 cut(s)	111, 209, 226, 489, 709, 812, 1000, 1033
BstKTI	GATC	2 cut(s)	208, 1164
BstMAI	GTCTC	2 cut(s)	63, 930
BstMBI	GATC	2 cut(s)	205, 1161
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 332, 335, 593, 770, 1143
BstNI	CCWGG	2 cut(s)	793, 1094
BstNSI	RCATGY	2 cut(s)	743, 971
BstPAI	GACNNNNGTC	1 cut(s)	781
BstPI	GGTNACC	2 cut(s)	360, 644
BstSCI	CCNGG	2 cut(s)	791, 1092
BstV1I	GCAGC	3 cut(s)	313, 322, 335
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	915, 1091
BtsCI	GGATG	8 cut(s)	111, 209, 226, 489, 709, 812, 1000, 1033
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	4 cut(s)	60, 138, 284, 562
Cac8I	GCNNGC	3 cut(s)	39, 917, 1099
CciI	TCATGA	1 cut(s)	853
Cfr10I	RCCGGY	1 cut(s)	911
Cfr13I	GGNCC	5 cut(s)	69, 631, 821, 1090, 1171
CseI	GACGC	1 cut(s)	1188
Csp6I	GTAC	4 cut(s)	474, 737, 799, 865
CviQI	GTAC	4 cut(s)	474, 737, 799, 865
DdeI	CTNAG	4 cut(s)	23, 339, 390, 597
DpnI	GATC	2 cut(s)	207, 1163
DpnII	GATC	2 cut(s)	205, 1161
DraI	TTTAAA	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	2 cut(s)	116, 513
EarI	CTCTTC	2 cut(s)	116, 513
Eco24I	GRGCYC	1 cut(s)	861
Eco47I	GGWCC	4 cut(s)	69, 631, 821, 1171
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	860
Eco91I	GGTNACC	2 cut(s)	360, 644
EcoO65I	GGTNACC	2 cut(s)	360, 644
EcoRII	CCWGG	2 cut(s)	791, 1092
EcoT22I	ATGCAT	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	861
FaqI	GGGAC	1 cut(s)	807
FauI	CCCGC	1 cut(s)	1130
Fnu4HI	GCNGC	4 cut(s)	324, 327, 336, 626
FokI	GGATG	8 cut(s)	118, 196, 233, 496, 716, 819, 1007, 1040
FriOI	GRGCYC	1 cut(s)	861
Fsp4HI	GCNGC	4 cut(s)	324, 327, 336, 626
FspBI	CTAG	1 cut(s)	774
GluI	GCNGC	4 cut(s)	324, 327, 336, 626
GsaI	CCCAGC	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	915, 1091
HapII	CCGG	3 cut(s)	137, 819, 912
HgaI	GACGC	1 cut(s)	1188
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	5 cut(s)	265, 344, 392, 429, 464
HpaII	CCGG	3 cut(s)	137, 819, 912
HphI	GGTGA	3 cut(s)	188, 354, 626
Hpy166II	GTNNAC	3 cut(s)	172, 396, 799
Hpy188I	TCNGA	4 cut(s)	118, 186, 391, 428
Hpy188III	TCNNGA	4 cut(s)	60, 341, 854, 933
Hpy8I	GTNNAC	3 cut(s)	172, 396, 799
Hpy99I	CGWCG	1 cut(s)	1182
HpyAV	CCTTC	4 cut(s)	517, 878, 1081, 1184
HpyCH4III	ACNGT	2 cut(s)	176, 557
HpyCH4V	TGCA	7 cut(s)	53, 329, 371, 707, 810, 1146, 1214
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 332, 335, 593, 770, 1143
HpyF3I	CTNAG	4 cut(s)	23, 339, 390, 597
Kzo9I	GATC	2 cut(s)	205, 1161
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	29, 761, 1033
Lsp1109I	GCAGC	3 cut(s)	313, 322, 335
LweI	GCATC	4 cut(s)	96, 474, 694, 797
MaeI	CTAG	1 cut(s)	774
MaeIII	GTNAC	7 cut(s)	176, 360, 551, 614, 644, 691, 1014
MalI	GATC	2 cut(s)	207, 1163
MboI	GATC	2 cut(s)	205, 1161
MboII	GAAGA	4 cut(s)	75, 103, 530, 1062
MhlI	GDGCHC	2 cut(s)	8, 861
MluCI	AATT	6 cut(s)	297, 304, 317, 468, 528, 653
MlyI	GAGTC	3 cut(s)	259, 353, 401
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	812
MseI	TTAA	2 cut(s)	354, 380
MslI	CAYNNNNRTG	2 cut(s)	981, 1041
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	137, 819, 912
MspR9I	CCNGG	2 cut(s)	793, 1094
Mva1269I	GAATGC	1 cut(s)	1204
MvaI	CCWGG	2 cut(s)	793, 1094
MwoI	GCNNNNNNNGC	6 cut(s)	38, 332, 335, 593, 770, 1143
NdeII	GATC	2 cut(s)	205, 1161
NlaIV	GGNNCC	2 cut(s)	234, 823
NmeAIII	GCCGAG	1 cut(s)	1180
NmuCI	GTSAC	4 cut(s)	176, 360, 551, 614
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	2 cut(s)	743, 971
PagI	TCATGA	1 cut(s)	853
PasI	CCCWGGG	1 cut(s)	792
PciI	ACATGT	2 cut(s)	739, 967
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	1204
PfeI	GAWTC	2 cut(s)	429, 464
PkrI	GCNGC	4 cut(s)	325, 328, 337, 627
PleI	GAGTC	3 cut(s)	259, 352, 400
PpsI	GAGTC	3 cut(s)	259, 352, 400
PscI	ACATGT	2 cut(s)	739, 967
PshAI	GACNNNNGTC	1 cut(s)	781
Psp6I	CCWGG	2 cut(s)	791, 1092
PspEI	GGTNACC	2 cut(s)	360, 644
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	791, 1092
PspN4I	GGNNCC	2 cut(s)	234, 823
PspPI	GGNCC	5 cut(s)	69, 631, 821, 1090, 1171
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	475, 738, 800, 866
RsaNI	GTAC	4 cut(s)	474, 737, 799, 865
RseI	CAYNNNNRTG	2 cut(s)	981, 1041
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	354, 380
SatI	GCNGC	4 cut(s)	324, 327, 336, 626
Sau3AI	GATC	2 cut(s)	205, 1161
Sau96I	GGNCC	5 cut(s)	69, 631, 821, 1090, 1171
ScaI	AGTACT	1 cut(s)	866
SchI	GAGTC	3 cut(s)	259, 353, 401
ScrFI	CCNGG	2 cut(s)	793, 1094
SduI	GDGCHC	2 cut(s)	8, 861
SfaNI	GCATC	4 cut(s)	96, 474, 694, 797
SinI	GGWCC	4 cut(s)	69, 631, 821, 1171
SmiMI	CAYNNNNRTG	2 cut(s)	981, 1041
SmlI	CTYRAG	3 cut(s)	489, 512, 931
SmoI	CTYRAG	3 cut(s)	489, 512, 931
Sse9I	AATT	6 cut(s)	297, 304, 317, 468, 528, 653
SsiI	CCGC	3 cut(s)	625, 1070, 1137
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	1 cut(s)	774
StyD4I	CCNGG	2 cut(s)	791, 1092
TaaI	ACNGT	2 cut(s)	176, 557
TaqI	TCGA	3 cut(s)	61, 651, 1177
TaqII	GACCGA	2 cut(s)	771, 1062
TasI	AATT	6 cut(s)	297, 304, 317, 468, 528, 653
TatI	WGTACW	3 cut(s)	736, 798, 864
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	2 cut(s)	429, 464
Tru1I	TTAA	2 cut(s)	354, 380
Tru9I	TTAA	2 cut(s)	354, 380
TscAI	CASTG	4 cut(s)	60, 138, 291, 562
TseFI	GTSAC	4 cut(s)	176, 360, 551, 614
TseI	GCWGC	3 cut(s)	323, 326, 335
Tsp45I	GTSAC	4 cut(s)	176, 360, 551, 614
TspDTI	ATGAA	4 cut(s)	687, 827, 999, 1107
TspRI	CASTG	4 cut(s)	60, 138, 291, 562
VpaK11BI	GGWCC	4 cut(s)	69, 631, 821, 1171
XapI	RAATTY	1 cut(s)	304
XceI	RCATGY	2 cut(s)	743, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1181
XspI	CTAG	1 cut(s)	774
ZrmI	AGTACT	1 cut(s)	866
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.