Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Reverse (-)

16456120 .. 16460501

Gene Structure 4382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15110.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTCTTGGAAGAGCAGAGAAGGAGAGGCATCGAAGAGTGCTTTTGTGTCTCGGAAATGGACCCTTTTGTTTTGCATTGGTTGCTTTTGTGCTGGGATGCTCTTCTCTGATAGAATGTGGTCAGTGCCGGAAATTGAAGACATATCGAGTACAACAAGGGTTGACGATGAAACACCGAAGTTAGGTTCTGGTTGTGATCCAACAATCGATGTAGAAAATGAACCAAAGGATGTTTACGGGGAAGTTTCAAAGACTCATCGTGCTATACACATGCTGGATAAAAAAATTTCAAATTTGGAGATGGAATTAGCTGCTGCAAGGGCTGCGCAGGAATCTATTCTAAGTGGTTCACCAGTTGCAGAAAATTTAAAAATTCGTGAGACAAGAAAGAAAAGAAAATATTTGATGGTTGTAGGAATAAATACTGCTTTTAGCAGTCGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCAAGCCGATAAAAGAAAGAAGCTTGAGGAAGAAAAGGGCATTGTAGTTCGCTTTGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTATTGAAGCAGAGGAGAATAGGCATGGTGACATTATGCGGCTGGATCATGTTGAGGGCTACCTTGAATTGTCAGCGAAGACAAAAATATTTTTTGCCACTGCTGTTGCTTCATGGGATGCAGATTTCTATGTTAAAGTTGACGATGATGTACATGTAAATATAGGAACACTTGGAGCAACTTTAGCTAGGCATCGACCAAAGCCGAGGGTGTATATTGGTTGCATGAAATCTGGTCCCGTCCTTGCTCAAAAGGGAGTAAGGTATCATGAGCCCGAGTATTGGAAATTTGGTGAGGAAGGGAACAAGTATTTCCGTCATGCCACAGGCCAGCTCTATGCTATCTCAAAAGACTTGGCTACTTACATATCAATCAACCAGCATGTGCTACACAAGTATGTGAATGAGGATGTTTCTTTGGGATCGTGGTTCATTGGATTGGATGTGGAGCAGGTTGATGACCGGAGATTATGTTGTGGAACACCACCTGATTGTGAGTGGAAGGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGATTGGAGTTGCAGTGGGATTTGCAAGTCTTCGGAGAGGATCAAGGAGGTCCACAGGCGCTGTGGAGAAGGTGAGAATGCTTTGTGGAATGCAGCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

404

Amino Acids

45.38

Weight (kDa)

7.55

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	1015
AciI	CCGC	1 cut(s)	613
AclWI	GGATC	4 cut(s)	191, 627, 1003, 1157
AcsI	RAATTY	5 cut(s)	285, 292, 364, 372, 860
AfaI	GTAC	2 cut(s)	151, 726
AfiI	CCNNNNNNNGG	2 cut(s)	182, 855
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	5 cut(s)	137, 249, 291, 581, 641
AluBI	AGCT	6 cut(s)	311, 499, 575, 761, 907, 1205
AluI	AGCT	6 cut(s)	311, 499, 575, 761, 907, 1205
Alw26I	GTCTC	2 cut(s)	54, 374
AlwI	GGATC	4 cut(s)	191, 627, 1003, 1157
AlwNI	CAGNNNCTG	1 cut(s)	1170
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	4 cut(s)	311, 314, 323, 1202
ApoI	RAATTY	5 cut(s)	285, 292, 364, 372, 860
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	3 cut(s)	328, 447, 1170
AspS9I	GGNCC	3 cut(s)	60, 809, 1159
AsuHPI	GGTGA	4 cut(s)	342, 614, 878, 1193
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	3 cut(s)	60, 809, 1159
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	3 cut(s)	144, 659, 1131
BbvI	GCAGC	3 cut(s)	298, 301, 310
BccI	CCATC	2 cut(s)	295, 400
BciVI	GTATCC	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	54, 374
BfaI	CTAG	1 cut(s)	762
BfoI	RGCGCY	1 cut(s)	1171
BfuAI	ACCTGC	1 cut(s)	1015
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	5 cut(s)	312, 315, 324, 614, 1203
BlsI	GCNGC	5 cut(s)	313, 316, 325, 615, 1204
Bme18I	GGWCC	3 cut(s)	60, 809, 1159
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	3 cut(s)	60, 809, 1159
BmiI	GGNNCC	2 cut(s)	62, 811
BmsI	GCATC	5 cut(s)	38, 87, 462, 682, 775
BpiI	GAAGAC	3 cut(s)	144, 659, 1131
Bpu10I	CCTNAGC	1 cut(s)	1080
BpuEI	CTTGAG	2 cut(s)	462, 521
Bsa29I	ATCGAT	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	779
BsaWI	WCCGGW	1 cut(s)	1035
BsaXI	ACNNNNNCTCC	4 cut(s)	1030, 1060, 1108, 1138
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 855
Bse1I	ACTGG	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	779
BseGI	GGATG	6 cut(s)	102, 235, 477, 697, 988, 1021
BseLI	CCNNNNNNNGG	2 cut(s)	182, 855
BseMII	CTCAG	1 cut(s)	1094
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	3 cut(s)	298, 301, 310
BseYI	CCCAGC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	903
BshVI	ATCGAT	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	2 cut(s)	128, 1036
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	2 cut(s)	182, 855
BsmAI	GTCTC	2 cut(s)	54, 374
BsmFI	GGGAC	1 cut(s)	795
BsmI	GAATGC	2 cut(s)	1192, 1204
BsnI	GGCC	1 cut(s)	903
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	1 cut(s)	849
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	4 cut(s)	196, 619, 995, 1149
BspACI	CCGC	1 cut(s)	613
BspANI	GGCC	1 cut(s)	903
BspCNI	CTCAG	1 cut(s)	1093
BspDI	ATCGAT	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	841
BspLI	GGNNCC	2 cut(s)	62, 811
BspMI	ACCTGC	1 cut(s)	1015
BspPI	GGATC	4 cut(s)	191, 627, 1003, 1157
BspQI	GCTCTTC	2 cut(s)	5, 107
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	779
BssMI	GATC	4 cut(s)	196, 619, 995, 1149
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	3 cut(s)	5, 29, 107
BstAPI	GCANNNNNTGC	2 cut(s)	81, 323
BstAUI	TGTACA	1 cut(s)	724
BstC8I	GCNNGC	2 cut(s)	905, 1087
BstDEI	CTNAG	2 cut(s)	341, 1080
BstF5I	GGATG	6 cut(s)	102, 235, 477, 697, 988, 1021
BstH2I	RGCGCY	1 cut(s)	1171
BstHHI	GCGC	3 cut(s)	328, 447, 1170
BstKTI	GATC	4 cut(s)	199, 622, 998, 1152
BstMAI	GTCTC	2 cut(s)	54, 374
BstMBI	GATC	4 cut(s)	196, 619, 995, 1149
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 320, 323, 581, 758
BstNSI	RCATGY	3 cut(s)	274, 731, 959
BstV1I	GCAGC	3 cut(s)	298, 301, 310
BstV2I	GAAGAC	3 cut(s)	144, 659, 1131
Bsu15I	ATCGAT	1 cut(s)	207
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	1 cut(s)	903
BsuTUI	ATCGAT	1 cut(s)	207
BtsCI	GGATG	6 cut(s)	102, 235, 477, 697, 988, 1021
BtsI	GCAGTG	2 cut(s)	672, 1129
BtsIMutI	CAGTG	4 cut(s)	129, 550, 672, 1129
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	2 cut(s)	905, 1087
CaiI	CAGNNNCTG	1 cut(s)	1170
CciI	TCATGA	1 cut(s)	841
CfoI	GCGC	3 cut(s)	328, 447, 1170
Cfr13I	GGNCC	3 cut(s)	60, 809, 1159
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	150, 725
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	9 cut(s)	271, 599, 623, 687, 728, 799, 842, 893, 956
CviQI	GTAC	2 cut(s)	150, 725
DdeI	CTNAG	2 cut(s)	341, 1080
DpnI	GATC	4 cut(s)	198, 621, 997, 1151
DpnII	GATC	4 cut(s)	196, 619, 995, 1149
DraI	TTTAAA	1 cut(s)	369
Eam1104I	CTCTTC	3 cut(s)	5, 29, 107
EarI	CTCTTC	3 cut(s)	5, 29, 107
Eco24I	GRGCYC	1 cut(s)	849
Eco47I	GGWCC	3 cut(s)	60, 809, 1159
Eco88I	CYCGRG	1 cut(s)	848
EcoT38I	GRGCYC	1 cut(s)	849
FaeI	CATG	9 cut(s)	274, 602, 626, 690, 731, 802, 845, 896, 959
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	9 cut(s)	270, 598, 622, 686, 727, 798, 841, 892, 955
Fnu4HI	GCNGC	5 cut(s)	312, 315, 324, 614, 1203
FokI	GGATG	6 cut(s)	109, 242, 484, 704, 995, 1028
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	5 cut(s)	312, 315, 324, 614, 1203
FspBI	CTAG	1 cut(s)	762
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	3 cut(s)	327, 446, 1169
GluI	GCNGC	5 cut(s)	312, 315, 324, 614, 1203
GsaI	CCCAGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	1171
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	2 cut(s)	128, 1036
HhaI	GCGC	3 cut(s)	328, 447, 1170
Hin1II	CATG	9 cut(s)	274, 602, 626, 690, 731, 802, 845, 896, 959
Hin6I	GCGC	3 cut(s)	326, 445, 1168
HinP1I	GCGC	3 cut(s)	326, 445, 1168
HincII	GTYRAC	2 cut(s)	163, 715
HindII	GTYRAC	2 cut(s)	163, 715
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	253, 332, 452
HpaII	CCGG	2 cut(s)	128, 1036
HphI	GGTGA	4 cut(s)	342, 614, 878, 1193
Hpy166II	GTNNAC	5 cut(s)	163, 235, 350, 715, 1162
Hpy188I	TCNGA	3 cut(s)	54, 109, 1144
Hpy188III	TCNNGA	2 cut(s)	377, 842
Hpy8I	GTNNAC	5 cut(s)	163, 235, 350, 715, 1162
HpyAV	CCTTC	4 cut(s)	14, 866, 1069, 1172
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4V	TGCA	8 cut(s)	75, 317, 359, 695, 798, 1122, 1134, 1202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 320, 323, 581, 758
HpyF3I	CTNAG	2 cut(s)	341, 1080
Hsp92II	CATG	9 cut(s)	274, 602, 626, 690, 731, 802, 845, 896, 959
HspAI	GCGC	3 cut(s)	326, 445, 1168
Kzo9I	GATC	4 cut(s)	196, 619, 995, 1149
LguI	GCTCTTC	2 cut(s)	5, 107
LmnI	GCTCC	2 cut(s)	749, 1021
Lsp1109I	GCAGC	3 cut(s)	298, 301, 310
LweI	GCATC	5 cut(s)	38, 87, 462, 682, 775
MaeI	CTAG	1 cut(s)	762
MaeIII	GTNAC	2 cut(s)	539, 602
MalI	GATC	4 cut(s)	198, 621, 997, 1151
MboI	GATC	4 cut(s)	196, 619, 995, 1149
MboII	GAAGA	7 cut(s)	22, 46, 94, 149, 518, 664, 1131
MhlI	GDGCHC	1 cut(s)	849
MluCI	AATT	8 cut(s)	132, 285, 292, 305, 364, 372, 641, 860
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	368, 708
MslI	CAYNNNNRTG	1 cut(s)	969
MspI	CCGG	2 cut(s)	128, 1036
Mva1269I	GAATGC	2 cut(s)	1192, 1204
MwoI	GCNNNNNNNGC	5 cut(s)	81, 320, 323, 581, 758
NdeII	GATC	4 cut(s)	196, 619, 995, 1149
NlaIII	CATG	9 cut(s)	274, 602, 626, 690, 731, 802, 845, 896, 959
NlaIV	GGNNCC	2 cut(s)	62, 811
NmeAIII	GCCGAG	1 cut(s)	804
NmuCI	GTSAC	2 cut(s)	539, 602
NsbI	TGCGCA	1 cut(s)	327
NspI	RCATGY	3 cut(s)	274, 731, 959
PagI	TCATGA	1 cut(s)	841
PciI	ACATGT	1 cut(s)	727
PciSI	GCTCTTC	2 cut(s)	5, 107
PctI	GAATGC	2 cut(s)	1192, 1204
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	332, 452
PkrI	GCNGC	5 cut(s)	313, 316, 325, 615, 1204
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	62, 811
PspPI	GGNCC	3 cut(s)	60, 809, 1159
PstNI	CAGNNNCTG	1 cut(s)	1170
RsaI	GTAC	2 cut(s)	151, 726
RsaNI	GTAC	2 cut(s)	150, 725
RseI	CAYNNNNRTG	1 cut(s)	969
SapI	GCTCTTC	2 cut(s)	5, 107
SaqAI	TTAA	2 cut(s)	368, 708
SatI	GCNGC	5 cut(s)	312, 315, 324, 614, 1203
Sau3AI	GATC	4 cut(s)	196, 619, 995, 1149
Sau96I	GGNCC	3 cut(s)	60, 809, 1159
SchI	GAGTC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	849
SfaNI	GCATC	5 cut(s)	38, 87, 462, 682, 775
SinI	GGWCC	3 cut(s)	60, 809, 1159
SmiMI	CAYNNNNRTG	1 cut(s)	969
SmlI	CTYRAG	2 cut(s)	477, 500
SmoI	CTYRAG	2 cut(s)	477, 500
Sse9I	AATT	8 cut(s)	132, 285, 292, 305, 364, 372, 641, 860
SsiI	CCGC	1 cut(s)	613
SspI	AATATT	2 cut(s)	401, 663
SspMI	CTAG	1 cut(s)	762
TaaI	ACNGT	1 cut(s)	545
TaqI	TCGA	5 cut(s)	32, 146, 207, 439, 769
TasI	AATT	8 cut(s)	132, 285, 292, 305, 364, 372, 641, 860
TatI	WGTACW	2 cut(s)	149, 724
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	332, 452
Tru1I	TTAA	2 cut(s)	368, 708
Tru9I	TTAA	2 cut(s)	368, 708
TscAI	CASTG	4 cut(s)	129, 550, 679, 1129
TseFI	GTSAC	2 cut(s)	539, 602
TseI	GCWGC	4 cut(s)	311, 314, 323, 1202
Tsp45I	GTSAC	2 cut(s)	539, 602
TspDTI	ATGAA	6 cut(s)	183, 234, 675, 815, 994, 1095
TspGWI	ACGGA	2 cut(s)	449, 878
TspRI	CASTG	4 cut(s)	129, 550, 679, 1129
VpaK11BI	GGWCC	3 cut(s)	60, 809, 1159
XapI	RAATTY	5 cut(s)	285, 292, 364, 372, 860
XceI	RCATGY	3 cut(s)	274, 731, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1169
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.