Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Reverse (-)

58843114 .. 58848146

Gene Structure 5033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTCTTGGAAGCTGAGAGGAGTAGAGCCAGCTTCAAGGAGTGCAGTGTCTCGAAGATGGACCATTTTGTTTTGTATTGCTTGTTTCTGTGCTGGGATGCTCTTCTCTGATAGAATGTGGTCAGTGCCGGAAATAAAAGGCATATCAAGGACAACAAGGGTTGACGGTGACAATCTGAAGTTAGTATCTGGTTGTGATCCATCCAATGATGTAGAACAGGAACCAACTGATGTTTACGGGGAAGTTTCAAAGACTCATCATGCTATACAAACACTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAAGGCTGCTCAGGAGTCTATACTTAATGGGTCACCGATTGCAGGAGATTTAAAAATCTCTGAGTCCACCAAGAAAAGAAAATATTTGATGGTTGTCGGAATCAATACTGCTTTTAGCAGTAGAAAGCGTAGAGATTCAATTCGTACTACTTGGATGCCTCAAGGCGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGAATTGTAGTTCGCTTTGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTGTTGAGGCTGAGGACAAAAGACATGGTGACATTATGCGCCTGGACCATGTTGAGGGTTACCTCGAATTATCAGCAAAGACCAAGATATTTTTTGCTACTGCTGTTACTTCATGGGATGCAGAGTTCTATGTCAAAGTTGATGATGATGTACATGTAAATATAGGAACACTTGGAGCAACGTTAGCTAGACATCGGTCAAAGCCCAGGGTGTACATTGGATGCATGAAATCCGGTCCCGTCCTTGCTCAAAAGGGAGTGAGGTATCATGAGCCCGAGTACTGGAAGTTTGGCGAGGAAGGGAACAAGTATTTTCGTCATGCCACCGGCCAGCTCTATGCTATCTCAAGAGACTTGGCTACTTACATCTCCATCAACCAGCATGTTCTACACAAGTATGTCAATGAGGATGTTTCTCTGGGTTCATGGTTACTGGGATTGGATGTGGAGCATATTGATGACCGAAGATTATGTTGTGGAACACCGCCTGATTGTGAATGGAAGGCCCAGGCAGGCAATGTCTGTGTTGCTTCATTTGATTGGAGTTGTAGCGGGATTTGCAAGTCTGCCGAGAGGATCAAAGAGGTCCATCGACGCTGTGGAGAAGGCGAGAATGCTTTGTGGAGTGCAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

403

Amino Acids

45.14

Weight (kDa)

8.18

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 108	1.1e-34	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	148 - 345	3.7e-51	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1058, 1125
AclI	AACGTT	1 cut(s)	755
AclWI	GGATC	2 cut(s)	191, 1157
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	4 cut(s)	463, 726, 788, 854
AfiI	CCNNNNNNNGG	3 cut(s)	359, 628, 855
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	4 cut(s)	36, 249, 291, 456
AjnI	CCWGG	3 cut(s)	615, 779, 1080
AloI	GAACNNNNNNTCC	4 cut(s)	507, 539, 683, 715
AluBI	AGCT	7 cut(s)	13, 32, 314, 499, 575, 761, 907
AluI	AGCT	7 cut(s)	13, 32, 314, 499, 575, 761, 907
Alw26I	GTCTC	2 cut(s)	54, 918
AlwI	GGATC	2 cut(s)	191, 1157
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	2 cut(s)	901, 1077
ApeKI	GCWGC	3 cut(s)	311, 314, 323
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	615
AspS9I	GGNCC	5 cut(s)	60, 619, 809, 1078, 1159
AsuHPI	GGTGA	3 cut(s)	179, 342, 614
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	4 cut(s)	60, 619, 809, 1159
BanII	GRGCYC	1 cut(s)	849
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	301, 310, 323
BccI	CCATC	6 cut(s)	51, 208, 295, 400, 953, 1170
BciT130I	CCWGG	3 cut(s)	617, 781, 1082
BciVI	GTATCC	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	54, 918
BfaI	CTAG	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	3 cut(s)	312, 315, 324
BlsI	GCNGC	3 cut(s)	313, 316, 325
BmcAI	AGTACT	1 cut(s)	854
Bme1390I	CCNGG	3 cut(s)	617, 781, 1082
Bme18I	GGWCC	4 cut(s)	60, 619, 809, 1159
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	5 cut(s)	60, 619, 809, 1078, 1159
BmiI	GGNNCC	2 cut(s)	222, 811
BmrFI	CCNGG	3 cut(s)	617, 781, 1082
BmrI	ACTGGG	1 cut(s)	1016
BmsI	GCATC	4 cut(s)	87, 462, 682, 785
BmuI	ACTGGG	1 cut(s)	1016
BoxI	GACNNNNGTC	1 cut(s)	769
Bpu10I	CCTNAGC	2 cut(s)	327, 585
BpuEI	CTTGAG	3 cut(s)	462, 521, 904
BsaJI	CCNNGG	3 cut(s)	779, 780, 1080
BsaWI	WCCGGW	1 cut(s)	806
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 628, 855
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	3 cut(s)	279, 860, 1011
Bse3DI	GCAATG	1 cut(s)	1096
BseBI	CCWGG	3 cut(s)	617, 781, 1082
BseDI	CCNNGG	3 cut(s)	779, 780, 1080
BseGI	GGATG	7 cut(s)	102, 200, 477, 697, 800, 988, 1021
BseLI	CCNNNNNNNGG	3 cut(s)	359, 628, 855
BseMI	GCAATG	1 cut(s)	1096
BseMII	CTCAG	4 cut(s)	5, 341, 369, 576
BseNI	ACTGG	3 cut(s)	279, 860, 1011
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	301, 310, 323
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	903, 1079
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	3 cut(s)	128, 807, 900
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	3 cut(s)	359, 628, 855
BsmAI	GTCTC	2 cut(s)	54, 918
BsmFI	GGGAC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	1192
BsnI	GGCC	2 cut(s)	903, 1079
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	1 cut(s)	849
Bsp1407I	TGTACA	2 cut(s)	724, 786
Bsp143I	GATC	2 cut(s)	196, 1149
BspACI	CCGC	2 cut(s)	1058, 1125
BspANI	GGCC	2 cut(s)	903, 1079
BspCNI	CTCAG	4 cut(s)	6, 340, 370, 577
BspHI	TCATGA	1 cut(s)	841
BspLI	GGNNCC	2 cut(s)	222, 811
BspPI	GGATC	2 cut(s)	191, 1157
BspQI	GCTCTTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	1096
BsrFI	RCCGGY	1 cut(s)	899
BsrGI	TGTACA	2 cut(s)	724, 786
BsrI	ACTGG	3 cut(s)	279, 860, 1011
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	3 cut(s)	779, 780, 1080
BssMI	GATC	2 cut(s)	196, 1149
Bst2UI	CCWGG	3 cut(s)	617, 781, 1082
Bst4CI	ACNGT	2 cut(s)	167, 545
Bst6I	CTCTTC	2 cut(s)	107, 501
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	2 cut(s)	724, 786
BstC8I	GCNNGC	3 cut(s)	30, 905, 1087
BstDEI	CTNAG	4 cut(s)	14, 327, 378, 585
BstEII	GGTNACC	2 cut(s)	348, 632
BstF5I	GGATG	7 cut(s)	102, 200, 477, 697, 800, 988, 1021
BstHHI	GCGC	1 cut(s)	615
BstKTI	GATC	2 cut(s)	199, 1152
BstMAI	GTCTC	2 cut(s)	54, 918
BstMBI	GATC	2 cut(s)	196, 1149
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 323, 581, 758, 1131
BstNI	CCWGG	3 cut(s)	617, 781, 1082
BstNSI	RCATGY	2 cut(s)	731, 959
BstPAI	GACNNNNGTC	1 cut(s)	769
BstPI	GGTNACC	2 cut(s)	348, 632
BstSCI	CCNGG	3 cut(s)	615, 779, 1080
BstV1I	GCAGC	3 cut(s)	301, 310, 323
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	903, 1079
BtsCI	GGATG	7 cut(s)	102, 200, 477, 697, 800, 988, 1021
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	4 cut(s)	51, 129, 272, 550
Cac8I	GCNNGC	3 cut(s)	30, 905, 1087
CciI	TCATGA	1 cut(s)	841
CfoI	GCGC	1 cut(s)	615
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	5 cut(s)	60, 619, 809, 1078, 1159
CseI	GACGC	1 cut(s)	1176
Csp6I	GTAC	4 cut(s)	462, 725, 787, 853
CviQI	GTAC	4 cut(s)	462, 725, 787, 853
DdeI	CTNAG	4 cut(s)	14, 327, 378, 585
DpnI	GATC	2 cut(s)	198, 1151
DpnII	GATC	2 cut(s)	196, 1149
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	2 cut(s)	107, 501
EarI	CTCTTC	2 cut(s)	107, 501
Eco24I	GRGCYC	1 cut(s)	849
Eco47I	GGWCC	4 cut(s)	60, 619, 809, 1159
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	848
Eco91I	GGTNACC	2 cut(s)	348, 632
EcoO65I	GGTNACC	2 cut(s)	348, 632
EcoRII	CCWGG	3 cut(s)	615, 779, 1080
EcoT22I	ATGCAT	1 cut(s)	800
EcoT38I	GRGCYC	1 cut(s)	849
FaqI	GGGAC	1 cut(s)	795
FauI	CCCGC	1 cut(s)	1118
Fnu4HI	GCNGC	3 cut(s)	312, 315, 324
FokI	GGATG	7 cut(s)	109, 187, 484, 704, 807, 995, 1028
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	3 cut(s)	312, 315, 324
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	1 cut(s)	614
GluI	GCNGC	3 cut(s)	312, 315, 324
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	903, 1079
HapII	CCGG	3 cut(s)	128, 807, 900
HgaI	GACGC	1 cut(s)	1176
HhaI	GCGC	1 cut(s)	615
Hin6I	GCGC	1 cut(s)	613
HinP1I	GCGC	1 cut(s)	613
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	5 cut(s)	253, 332, 380, 417, 452
HpaII	CCGG	3 cut(s)	128, 807, 900
HphI	GGTGA	3 cut(s)	179, 342, 614
Hpy166II	GTNNAC	4 cut(s)	163, 235, 384, 787
Hpy188I	TCNGA	4 cut(s)	109, 177, 379, 416
Hpy188III	TCNNGA	4 cut(s)	51, 329, 842, 921
Hpy8I	GTNNAC	4 cut(s)	163, 235, 384, 787
Hpy99I	CGWCG	1 cut(s)	1170
HpyAV	CCTTC	4 cut(s)	505, 866, 1069, 1172
HpyCH4III	ACNGT	2 cut(s)	167, 545
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	7 cut(s)	44, 317, 359, 695, 798, 1134, 1202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 323, 581, 758, 1131
HpyF3I	CTNAG	4 cut(s)	14, 327, 378, 585
HpySE526I	ACGT	1 cut(s)	755
HspAI	GCGC	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	196, 1149
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	749, 1021
Lsp1109I	GCAGC	3 cut(s)	301, 310, 323
LweI	GCATC	4 cut(s)	87, 462, 682, 785
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	7 cut(s)	167, 348, 539, 602, 632, 679, 1002
MalI	GATC	2 cut(s)	198, 1151
MboI	GATC	2 cut(s)	196, 1149
MboII	GAAGA	4 cut(s)	66, 94, 518, 1050
MhlI	GDGCHC	1 cut(s)	849
MluCI	AATT	6 cut(s)	285, 292, 305, 456, 516, 641
MlyI	GAGTC	3 cut(s)	247, 341, 389
MmeI	TCCRAC	1 cut(s)	394
Mph1103I	ATGCAT	1 cut(s)	800
MseI	TTAA	2 cut(s)	342, 368
MslI	CAYNNNNRTG	2 cut(s)	969, 1029
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	128, 807, 900
MspR9I	CCNGG	3 cut(s)	617, 781, 1082
Mva1269I	GAATGC	1 cut(s)	1192
MvaI	CCWGG	3 cut(s)	617, 781, 1082
MwoI	GCNNNNNNNGC	5 cut(s)	320, 323, 581, 758, 1131
NdeII	GATC	2 cut(s)	196, 1149
NlaIV	GGNNCC	2 cut(s)	222, 811
NmeAIII	GCCGAG	1 cut(s)	1168
NmuCI	GTSAC	4 cut(s)	167, 348, 539, 602
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	2 cut(s)	731, 959
PagI	TCATGA	1 cut(s)	841
PasI	CCCWGGG	1 cut(s)	780
PciI	ACATGT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1192
PfeI	GAWTC	2 cut(s)	417, 452
PkrI	GCNGC	3 cut(s)	313, 316, 325
PleI	GAGTC	3 cut(s)	247, 340, 388
PpsI	GAGTC	3 cut(s)	247, 340, 388
PscI	ACATGT	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	769
Psp1406I	AACGTT	1 cut(s)	755
Psp6I	CCWGG	3 cut(s)	615, 779, 1080
PspEI	GGTNACC	2 cut(s)	348, 632
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	3 cut(s)	615, 779, 1080
PspN4I	GGNNCC	2 cut(s)	222, 811
PspPI	GGNCC	5 cut(s)	60, 619, 809, 1078, 1159
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	4 cut(s)	463, 726, 788, 854
RsaNI	GTAC	4 cut(s)	462, 725, 787, 853
RseI	CAYNNNNRTG	2 cut(s)	969, 1029
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	342, 368
SatI	GCNGC	3 cut(s)	312, 315, 324
Sau3AI	GATC	2 cut(s)	196, 1149
Sau96I	GGNCC	5 cut(s)	60, 619, 809, 1078, 1159
ScaI	AGTACT	1 cut(s)	854
SchI	GAGTC	3 cut(s)	247, 341, 389
ScrFI	CCNGG	3 cut(s)	617, 781, 1082
SduI	GDGCHC	1 cut(s)	849
SfaNI	GCATC	4 cut(s)	87, 462, 682, 785
SinI	GGWCC	4 cut(s)	60, 619, 809, 1159
SmiMI	CAYNNNNRTG	2 cut(s)	969, 1029
SmlI	CTYRAG	3 cut(s)	477, 500, 919
SmoI	CTYRAG	3 cut(s)	477, 500, 919
Sse9I	AATT	6 cut(s)	285, 292, 305, 456, 516, 641
SsiI	CCGC	2 cut(s)	1058, 1125
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	3 cut(s)	615, 779, 1080
TaaI	ACNGT	2 cut(s)	167, 545
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	3 cut(s)	52, 639, 1165
TaqII	GACCGA	2 cut(s)	759, 1050
TasI	AATT	6 cut(s)	285, 292, 305, 456, 516, 641
TatI	WGTACW	3 cut(s)	724, 786, 852
TfiI	GAWTC	2 cut(s)	417, 452
Tru1I	TTAA	2 cut(s)	342, 368
Tru9I	TTAA	2 cut(s)	342, 368
TscAI	CASTG	4 cut(s)	51, 129, 279, 550
TseFI	GTSAC	4 cut(s)	167, 348, 539, 602
TseI	GCWGC	3 cut(s)	311, 314, 323
Tsp45I	GTSAC	4 cut(s)	167, 348, 539, 602
TspDTI	ATGAA	4 cut(s)	675, 815, 987, 1095
TspRI	CASTG	4 cut(s)	51, 129, 279, 550
VpaK11BI	GGWCC	4 cut(s)	60, 619, 809, 1159
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	2 cut(s)	731, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1169
XspI	CTAG	1 cut(s)	762
ZrmI	AGTACT	1 cut(s)	854
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.