Rorug05G0184100

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009796
Physical Location & Seq
Forward (+)
17819022 .. 17820889
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0184100.1

Sequence Viewer

Length: 951 bp
ATGTCGGATGGGGACTCGATGATGGCAGGGCTGCTTAAGTCTATCTGGGTTCAGATCCGATCGGGTGCACCTTGGCTTCTATCTCTAGGAACATCGGCTTGGATCCGGCGGCGGTGGTGCAGTGGCAGTGCTCAGCCAGAAGAAACTGTTGCAAGATGGCAACGATACCTTGGCATGAAGGCCACAAATCATAGGTTGTTTCAGCTCAATGTCTTTGATTGGCGCGACTTTCGTAAAGGAAAGAAACTAGACGGGGCATGGGATGCAATCAGGATTCTTGGTTCATATGTATGTAGAAAAAAAAATGGAGGTGTAAATCCAGACCATTGCACAATGTTTGAGCTTACCTATGTCCACGACTCTGAAAAACCTGATGAACCAAATTCTAAACAAGCTATTGCCTTAATGAAGGACAAGATTAACAAGATGAAGACTACAAAGAGGGCATCCCAACTTCCAGAGGTTCTTAATGATTTTGAAATCAATGAAGTATATGCGTCTGTGCTTGGAAAAGAGACACGTGGAGGGGTACGAGGATTTGGCATTGGAGTCAGACCAGAACAAGTTCCTGGTGTACTAGTGCAGAAAAGAGGTGTTCATTTAGAGGTACAAGCAATGAGAGAACAACATGAGGCTGAGATTGAAACGATTCGGAAGGAGAGCCAAGAAAAGGAAGATAAGCTTAGGGAGGAAATGAACAAACAAACTCTGGCGGCCACAAAAGATAAAATAAAAAATATGGAGATTGCAATGAAAAAACAGGAAGCTCTTATGATGGTGTTACTTGGGGTATATGAGTCAAGTGATATGCTTGCTGTAGCTTTAAGAACGAAGGGTGGTTCTCTCCAACCATCGATGAGCCATTCTCAATCTTCATATGAGCAGAACTTGAACGATGTTTACATACCACAGTGCTCTGAAGAATTGCAGCAGCAAGTTACCACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4094 Galactosyl_T

Protein Analysis

316

Amino Acids

35.92

Weight (kDa)

8.87

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 100 - 186 9.3e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 3 cut(s) 109, 112, 713
AclWI GGATC 3 cut(s) 49, 97, 110
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 939
AcvI CACGTG 1 cut(s) 521
AfaI GTAC 3 cut(s) 531, 576, 609
AfiI CCNNNNNNNGG 1 cut(s) 670
AflII CTTAAG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 518
AgsI TTSAA 3 cut(s) 479, 644, 892
AhlI ACTAGT 1 cut(s) 577
AjnI CCWGG 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 82, 114
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 6 cut(s) 205, 343, 395, 682, 767, 821
AluI AGCT 6 cut(s) 205, 343, 395, 682, 767, 821
Alw21I GWGCWC 3 cut(s) 70, 133, 917
Alw26I GTCTC 1 cut(s) 509
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 3 cut(s) 49, 97, 110
AoxI GGCC 2 cut(s) 180, 714
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 3 cut(s) 31, 928, 931
ApoI RAATTY 1 cut(s) 382
Asp700I GAANNNNTTC 2 cut(s) 564, 648
AspLEI GCGC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 102
BbrPI CACGTG 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 437
Bbv12I GWGCWC 3 cut(s) 70, 133, 917
BbvI GCAGC 3 cut(s) 18, 940, 943
BccI CCATC 5 cut(s) 2, 16, 150, 769, 859
BciT130I CCWGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 509
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 3 cut(s) 86, 248, 578
BfmI CTRYAG 1 cut(s) 816
BfrI CTTAAG 1 cut(s) 35
BisI GCNGC 5 cut(s) 32, 110, 714, 929, 932
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 5 cut(s) 33, 111, 715, 930, 933
Bme1390I CCNGG 1 cut(s) 570
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 2 cut(s) 253, 455
BpiI GAAGAC 1 cut(s) 437
BplI GAGNNNNNCTC 2 cut(s) 850, 882
Bpu10I CCTNAGC 1 cut(s) 683
Bpu1102I GCTNAGC 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 854
BsaAI YACGTR 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 71, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse3DI GCAATG 3 cut(s) 325, 621, 756
BseBI CCWGG 1 cut(s) 570
BseCI ATCGAT 1 cut(s) 854
BseDI CCNNGG 2 cut(s) 71, 169
BseGI GGATG 3 cut(s) 13, 268, 446
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 3 cut(s) 325, 621, 756
BseMII CTCAG 2 cut(s) 146, 627
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 3 cut(s) 18, 940, 943
BsgI GTGCAG 2 cut(s) 139, 602
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 182, 716
BshVI ATCGAT 1 cut(s) 854
BsiEI CGRYCG 1 cut(s) 62
BsiHKAI GWGCWC 3 cut(s) 70, 133, 917
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 182, 716
Bsp1286I GDGCHC 3 cut(s) 70, 133, 917
Bsp143I GATC 3 cut(s) 54, 59, 102
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 3 cut(s) 109, 112, 713
BspANI GGCC 2 cut(s) 182, 716
BspCNI CTCAG 2 cut(s) 145, 628
BspDI ATCGAT 1 cut(s) 854
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 3 cut(s) 49, 97, 110
BspTI CTTAAG 1 cut(s) 35
BsrDI GCAATG 3 cut(s) 325, 621, 756
BssECI CCNNGG 2 cut(s) 71, 169
BssMI GATC 3 cut(s) 54, 59, 102
BssT1I CCWWGG 2 cut(s) 71, 169
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 148, 912
BstAFI CTTAAG 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 3 cut(s) 132, 636, 683
BstF5I GGATG 3 cut(s) 13, 268, 446
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 57, 62, 105
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 54, 59, 102
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 570
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 3 cut(s) 18, 940, 943
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 2 cut(s) 54, 102
BstYI RGATCY 2 cut(s) 54, 102
Bsu15I ATCGAT 1 cut(s) 854
BsuRI GGCC 2 cut(s) 182, 716
BsuTUI ATCGAT 1 cut(s) 854
BtsCI GGATG 3 cut(s) 13, 268, 446
BtsI GCAGTG 2 cut(s) 127, 133
BtsIMutI CAGTG 3 cut(s) 127, 133, 917
Cac8I GCNNGC 1 cut(s) 813
CfoI GCGC 1 cut(s) 225
ClaI ATCGAT 1 cut(s) 854
CseI GACGC 1 cut(s) 486
Csp6I GTAC 3 cut(s) 530, 575, 608
CviAII CATG 3 cut(s) 175, 258, 629
CviQI GTAC 3 cut(s) 530, 575, 608
DdeI CTNAG 3 cut(s) 132, 636, 683
DpnI GATC 3 cut(s) 56, 61, 104
DpnII GATC 3 cut(s) 54, 59, 102
EaeI YGGCCR 1 cut(s) 714
Eco130I CCWWGG 2 cut(s) 71, 169
Eco57I CTGAAG 1 cut(s) 939
Eco72I CACGTG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 71, 169
ErhI CCWWGG 2 cut(s) 71, 169
FaeI CATG 3 cut(s) 178, 261, 632
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 174, 257, 628
FauNDI CATATG 2 cut(s) 286, 877
Fnu4HI GCNGC 5 cut(s) 32, 110, 714, 929, 932
FokI GGATG 3 cut(s) 20, 275, 433
Fsp4HI GCNGC 5 cut(s) 32, 110, 714, 929, 932
FspBI CTAG 3 cut(s) 86, 248, 578
GlaI GCGC 1 cut(s) 224
GluI GCNGC 5 cut(s) 32, 110, 714, 929, 932
HaeIII GGCC 2 cut(s) 182, 716
HapII CCGG 1 cut(s) 106
HgaI GACGC 1 cut(s) 486
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 178, 261, 632
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 6 cut(s) 14, 274, 359, 549, 649, 797
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 4 cut(s) 68, 355, 575, 901
Hpy188I TCNGA 7 cut(s) 7, 54, 59, 364, 554, 654, 919
Hpy188III TCNNGA 3 cut(s) 271, 320, 458
Hpy8I GTNNAC 4 cut(s) 68, 355, 575, 901
HpyAV CCTTC 4 cut(s) 172, 403, 649, 826
HpyCH4III ACNGT 2 cut(s) 148, 912
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 8 cut(s) 68, 120, 152, 266, 330, 583, 749, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 132, 636, 683
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 3 cut(s) 178, 261, 632
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 54, 59, 102
Lsp1109I GCAGC 3 cut(s) 18, 940, 943
LweI GCATC 2 cut(s) 253, 455
MaeI CTAG 3 cut(s) 86, 248, 578
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 2 cut(s) 780, 937
MalI GATC 3 cut(s) 56, 61, 104
MboI GATC 3 cut(s) 54, 59, 102
MboII GAAGA 5 cut(s) 152, 442, 686, 864, 932
MflI RGATCY 2 cut(s) 54, 102
MhlI GDGCHC 3 cut(s) 70, 133, 917
MluCI AATT 3 cut(s) 382, 923, 946
MlyI GAGTC 4 cut(s) 8, 353, 558, 806
MmeI TCCRAC 1 cut(s) 871
MnlI CCTC 9 cut(s) 302, 435, 454, 518, 527, 584, 598, 625, 682
MroXI GAANNNNTTC 2 cut(s) 564, 648
MseI TTAA 5 cut(s) 36, 404, 420, 468, 824
MslI CAYNNNNRTG 1 cut(s) 289
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeI CATATG 2 cut(s) 286, 877
NdeII GATC 3 cut(s) 54, 59, 102
NlaIII CATG 3 cut(s) 178, 261, 632
NlaIV GGNNCC 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 564, 648
PfeI GAWTC 2 cut(s) 274, 649
PkrI GCNGC 5 cut(s) 33, 111, 715, 930, 933
Ple19I CGATCG 1 cut(s) 62
PleI GAGTC 4 cut(s) 8, 353, 557, 805
PmaCI CACGTG 1 cut(s) 521
PmlI CACGTG 1 cut(s) 521
PpsI GAGTC 4 cut(s) 8, 353, 557, 805
Ppu21I YACGTR 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 568
PspCI CACGTG 1 cut(s) 521
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 104
PsrI GAACNNNNNNTAC 2 cut(s) 884, 916
PsuI RGATCY 2 cut(s) 54, 102
PvuI CGATCG 1 cut(s) 62
RsaI GTAC 3 cut(s) 531, 576, 609
RsaNI GTAC 3 cut(s) 530, 575, 608
RseI CAYNNNNRTG 1 cut(s) 289
SaqAI TTAA 5 cut(s) 36, 404, 420, 468, 824
SatI GCNGC 5 cut(s) 32, 110, 714, 929, 932
Sau3AI GATC 3 cut(s) 54, 59, 102
SchI GAGTC 4 cut(s) 8, 353, 558, 806
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 3 cut(s) 70, 133, 917
SfaNI GCATC 2 cut(s) 253, 455
SfcI CTRYAG 1 cut(s) 816
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 3 cut(s) 382, 923, 946
SsiI CCGC 3 cut(s) 109, 112, 713
SspMI CTAG 3 cut(s) 86, 248, 578
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 71, 169
TaaI ACNGT 2 cut(s) 148, 912
TaiI ACGT 1 cut(s) 523
TaqI TCGA 2 cut(s) 17, 854
TasI AATT 3 cut(s) 382, 923, 946
TatI WGTACW 1 cut(s) 574
TauI GCSGC 2 cut(s) 112, 716
TfiI GAWTC 2 cut(s) 274, 649
Tru1I TTAA 5 cut(s) 36, 404, 420, 468, 824
Tru9I TTAA 5 cut(s) 36, 404, 420, 468, 824
TscAI CASTG 3 cut(s) 127, 133, 917
TseI GCWGC 3 cut(s) 31, 928, 931
TspRI CASTG 3 cut(s) 127, 133, 917
Vha464I CTTAAG 1 cut(s) 35
VneI GTGCAC 1 cut(s) 66
XapI RAATTY 1 cut(s) 382
XmnI GAANNNNTTC 2 cut(s) 564, 648
XspI CTAG 3 cut(s) 86, 248, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.