Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Forward (+)

34748687 .. 34753914

Gene Structure 5228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG282500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTGGTCAGTGCCGGAAATAAAAGGCATGTCAAGGACAACAAGGGTTGATGGTGACAATCTGAAGTTAGTATCTGGTTGTGATCCATCCAATAAGGATGTAGAACAGGAATCAACTGATGTTTACGGGGAAGTTTCAAAGACTCATCATGCTATACAAACACTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAAGGCTGCTCAGGAATCTATACTTAACGGGTCACCGGTTGCAGGAGATTTAAAAGTCTCTGAGTCCACCAAGAAAAGAAAATATTTGATGGTTGTCGGAATCAATACTGCTTTTAGCAGTAGAAAGCGTAGAGATTCAGTCCGTACTACTTGGATGCCTCAAGGCGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGAATTGTAGTTCGCTTTGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTGTTGAGGCCGAGGACAAAAGACATGGTGACATTATGCGGCTGGACCATGTTGAGGGTTACCTCGAATTATCAGCAAAGACCAAGATATTTTTTGCTACTGCTGTTACTACATGGGATGCAGAGTTCTATGTCAAAGTTGATGATGATGTACATGTAAATATAGGAACACTTGGAGCAACTTTAGCTAGACATCGGTCAAAGCCCAGGGTGTACATTGGATGCATGAAATCCGGTCCCGTCCTTGCTCAAAAGGGAGTGAGGTATCATGAGCCCGAGTACTGGAAGTTCGGCGAGGAAGGGAACAAGTATTTTCGTCATGCCACCGGCCAGCTCTATGCTATCTCAAGAGACTTGGCTACTTACATCTCCATCAACCAGCATGTTCTACACAAGTATGTCAATGAGGATGTTTCTCTGGGTTCATGGTTACTGGGATTGGATGTGGAGCATATTGATGACCGAAGATTATGTTGTGGAACACCGCCTGATTGTGAATGGAAGGCCCAGGCTGGCAATGTCTGTGTTGCTTCATTTGATTGGACTTGTAGCGGGATTTGCAAGTCTGCTGAGAGGATCAAAGAGGTCCATCGACGCTGTGGAGAAGGCGAGAATGCTTTGTGGAGTGCAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

366

Amino Acids

40.93

Weight (kDa)

7.2

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	1 - 71	1.5e-20	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	111 - 308	1e-50	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	502, 947, 1014
AclWI	GGATC	2 cut(s)	77, 1046
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	352, 615, 677, 743
AfiI	CCNNNNNNNGG	3 cut(s)	248, 517, 744
AflIII	ACRYGT	1 cut(s)	616
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	138, 180
AjnI	CCWGG	2 cut(s)	668, 969
AloI	GAACNNNNNNTCC	4 cut(s)	396, 428, 572, 604
AluBI	AGCT	5 cut(s)	203, 388, 464, 650, 796
AluI	AGCT	5 cut(s)	203, 388, 464, 650, 796
Alw26I	GTCTC	2 cut(s)	268, 807
AlwI	GGATC	2 cut(s)	77, 1046
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	3 cut(s)	471, 790, 966
ApeKI	GCWGC	3 cut(s)	200, 203, 212
ApoI	RAATTY	1 cut(s)	181
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	4 cut(s)	508, 698, 967, 1048
AsuHPI	GGTGA	3 cut(s)	65, 231, 503
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	3 cut(s)	508, 698, 1048
BanII	GRGCYC	1 cut(s)	738
BbvI	GCAGC	3 cut(s)	190, 199, 212
BccI	CCATC	6 cut(s)	44, 94, 184, 289, 842, 1059
BciT130I	CCWGG	2 cut(s)	670, 971
BciVI	GTATCC	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	268, 807
BfaI	CTAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	4 cut(s)	201, 204, 213, 503
BlsI	GCNGC	4 cut(s)	202, 205, 214, 504
BmcAI	AGTACT	1 cut(s)	743
Bme1390I	CCNGG	2 cut(s)	670, 971
Bme18I	GGWCC	3 cut(s)	508, 698, 1048
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	4 cut(s)	508, 698, 967, 1048
BmiI	GGNNCC	1 cut(s)	700
BmrFI	CCNGG	2 cut(s)	670, 971
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	3 cut(s)	351, 571, 674
BmuI	ACTGGG	1 cut(s)	905
BoxI	GACNNNNGTC	1 cut(s)	658
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	3 cut(s)	351, 410, 793
BsaJI	CCNNGG	4 cut(s)	474, 668, 669, 969
BsaWI	WCCGGW	2 cut(s)	241, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 517, 744
Bse118I	RCCGGY	2 cut(s)	241, 788
Bse1I	ACTGG	3 cut(s)	168, 749, 900
Bse3DI	GCAATG	1 cut(s)	985
BseBI	CCWGG	2 cut(s)	670, 971
BseDI	CCNNGG	4 cut(s)	474, 668, 669, 969
BseGI	GGATG	7 cut(s)	86, 103, 366, 586, 689, 877, 910
BseLI	CCNNNNNNNGG	3 cut(s)	248, 517, 744
BseMI	GCAATG	1 cut(s)	985
BseMII	CTCAG	3 cut(s)	230, 258, 1023
BseNI	ACTGG	3 cut(s)	168, 749, 900
BseXI	GCAGC	3 cut(s)	190, 199, 212
BshFI	GGCC	3 cut(s)	473, 792, 968
BshTI	ACCGGT	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	4 cut(s)	14, 242, 696, 789
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	3 cut(s)	248, 517, 744
BsmAI	GTCTC	2 cut(s)	268, 807
BsmFI	GGGAC	1 cut(s)	684
BsmI	GAATGC	1 cut(s)	1081
BsnI	GGCC	3 cut(s)	473, 792, 968
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp1407I	TGTACA	2 cut(s)	613, 675
Bsp143I	GATC	2 cut(s)	82, 1038
BspACI	CCGC	3 cut(s)	502, 947, 1014
BspANI	GGCC	3 cut(s)	473, 792, 968
BspCNI	CTCAG	3 cut(s)	229, 259, 1024
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	1 cut(s)	700
BspPI	GGATC	2 cut(s)	77, 1046
BsrDI	GCAATG	1 cut(s)	985
BsrFI	RCCGGY	2 cut(s)	241, 788
BsrGI	TGTACA	2 cut(s)	613, 675
BsrI	ACTGG	3 cut(s)	168, 749, 900
BssAI	RCCGGY	2 cut(s)	241, 788
BssECI	CCNNGG	4 cut(s)	474, 668, 669, 969
BssMI	GATC	2 cut(s)	82, 1038
Bst2UI	CCWGG	2 cut(s)	670, 971
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstAUI	TGTACA	2 cut(s)	613, 675
BstC8I	GCNNGC	2 cut(s)	794, 976
BstDEI	CTNAG	3 cut(s)	216, 267, 1032
BstEII	GGTNACC	2 cut(s)	237, 521
BstF5I	GGATG	7 cut(s)	86, 103, 366, 586, 689, 877, 910
BstKTI	GATC	2 cut(s)	85, 1041
BstMAI	GTCTC	2 cut(s)	268, 807
BstMBI	GATC	2 cut(s)	82, 1038
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 212, 470, 647, 1020
BstNI	CCWGG	2 cut(s)	670, 971
BstNSI	RCATGY	3 cut(s)	31, 620, 848
BstPAI	GACNNNNGTC	1 cut(s)	658
BstPI	GGTNACC	2 cut(s)	237, 521
BstSCI	CCNGG	2 cut(s)	668, 969
BstV1I	GCAGC	3 cut(s)	190, 199, 212
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	3 cut(s)	473, 792, 968
BtsCI	GGATG	7 cut(s)	86, 103, 366, 586, 689, 877, 910
BtsIMutI	CAGTG	3 cut(s)	15, 161, 439
Cac8I	GCNNGC	2 cut(s)	794, 976
CciI	TCATGA	1 cut(s)	730
Cfr10I	RCCGGY	2 cut(s)	241, 788
Cfr13I	GGNCC	4 cut(s)	508, 698, 967, 1048
CseI	GACGC	1 cut(s)	1065
Csp6I	GTAC	4 cut(s)	351, 614, 676, 742
CspAI	ACCGGT	1 cut(s)	241
CviQI	GTAC	4 cut(s)	351, 614, 676, 742
DdeI	CTNAG	3 cut(s)	216, 267, 1032
DpnI	GATC	2 cut(s)	84, 1040
DpnII	GATC	2 cut(s)	82, 1038
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	738
Eco47I	GGWCC	3 cut(s)	508, 698, 1048
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	737
Eco91I	GGTNACC	2 cut(s)	237, 521
EcoO65I	GGTNACC	2 cut(s)	237, 521
EcoRII	CCWGG	2 cut(s)	668, 969
EcoT22I	ATGCAT	1 cut(s)	689
EcoT38I	GRGCYC	1 cut(s)	738
FaqI	GGGAC	1 cut(s)	684
FauI	CCCGC	1 cut(s)	1007
Fnu4HI	GCNGC	4 cut(s)	201, 204, 213, 503
FokI	GGATG	7 cut(s)	73, 110, 373, 593, 696, 884, 917
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	4 cut(s)	201, 204, 213, 503
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	4 cut(s)	201, 204, 213, 503
HaeIII	GGCC	3 cut(s)	473, 792, 968
HapII	CCGG	4 cut(s)	14, 242, 696, 789
HgaI	GACGC	1 cut(s)	1065
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	6 cut(s)	110, 142, 221, 269, 306, 341
HpaII	CCGG	4 cut(s)	14, 242, 696, 789
HphI	GGTGA	3 cut(s)	65, 231, 503
Hpy166II	GTNNAC	3 cut(s)	124, 273, 676
Hpy188I	TCNGA	3 cut(s)	63, 268, 305
Hpy188III	TCNNGA	3 cut(s)	218, 731, 810
Hpy8I	GTNNAC	3 cut(s)	124, 273, 676
Hpy99I	CGWCG	1 cut(s)	1059
HpyAV	CCTTC	4 cut(s)	394, 755, 958, 1061
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	6 cut(s)	206, 248, 584, 687, 1023, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 212, 470, 647, 1020
HpyF3I	CTNAG	3 cut(s)	216, 267, 1032
Kzo9I	GATC	2 cut(s)	82, 1038
LmnI	GCTCC	2 cut(s)	638, 910
Lsp1109I	GCAGC	3 cut(s)	190, 199, 212
LweI	GCATC	3 cut(s)	351, 571, 674
MaeI	CTAG	1 cut(s)	651
MaeIII	GTNAC	7 cut(s)	53, 237, 428, 491, 521, 568, 891
MalI	GATC	2 cut(s)	84, 1040
MboI	GATC	2 cut(s)	82, 1038
MboII	GAAGA	2 cut(s)	407, 939
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	5 cut(s)	174, 181, 194, 405, 530
MlyI	GAGTC	2 cut(s)	136, 278
MmeI	TCCRAC	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	689
MseI	TTAA	2 cut(s)	231, 257
MslI	CAYNNNNRTG	2 cut(s)	858, 918
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	4 cut(s)	14, 242, 696, 789
MspR9I	CCNGG	2 cut(s)	670, 971
Mva1269I	GAATGC	1 cut(s)	1081
MvaI	CCWGG	2 cut(s)	670, 971
MwoI	GCNNNNNNNGC	5 cut(s)	209, 212, 470, 647, 1020
NdeII	GATC	2 cut(s)	82, 1038
NlaIV	GGNNCC	1 cut(s)	700
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	4 cut(s)	53, 237, 428, 491
NsiI	ATGCAT	1 cut(s)	689
NspI	RCATGY	3 cut(s)	31, 620, 848
PagI	TCATGA	1 cut(s)	730
PasI	CCCWGGG	1 cut(s)	669
PciI	ACATGT	1 cut(s)	616
PctI	GAATGC	1 cut(s)	1081
PfeI	GAWTC	4 cut(s)	110, 221, 306, 341
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	4 cut(s)	202, 205, 214, 504
PleI	GAGTC	2 cut(s)	136, 277
PpsI	GAGTC	2 cut(s)	136, 277
PscI	ACATGT	1 cut(s)	616
PshAI	GACNNNNGTC	1 cut(s)	658
Psp6I	CCWGG	2 cut(s)	668, 969
PspEI	GGTNACC	2 cut(s)	237, 521
PspGI	CCWGG	2 cut(s)	668, 969
PspN4I	GGNNCC	1 cut(s)	700
PspPI	GGNCC	4 cut(s)	508, 698, 967, 1048
PsrI	GAACNNNNNNTAC	2 cut(s)	734, 766
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	4 cut(s)	352, 615, 677, 743
RsaNI	GTAC	4 cut(s)	351, 614, 676, 742
RseI	CAYNNNNRTG	2 cut(s)	858, 918
SaqAI	TTAA	2 cut(s)	231, 257
SatI	GCNGC	4 cut(s)	201, 204, 213, 503
Sau3AI	GATC	2 cut(s)	82, 1038
Sau96I	GGNCC	4 cut(s)	508, 698, 967, 1048
ScaI	AGTACT	1 cut(s)	743
SchI	GAGTC	2 cut(s)	136, 278
ScrFI	CCNGG	2 cut(s)	670, 971
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	3 cut(s)	351, 571, 674
SinI	GGWCC	3 cut(s)	508, 698, 1048
SmiMI	CAYNNNNRTG	2 cut(s)	858, 918
SmlI	CTYRAG	3 cut(s)	366, 389, 808
SmoI	CTYRAG	3 cut(s)	366, 389, 808
Sse9I	AATT	5 cut(s)	174, 181, 194, 405, 530
SsiI	CCGC	3 cut(s)	502, 947, 1014
SspI	AATATT	1 cut(s)	290
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	668, 969
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	2 cut(s)	528, 1054
TaqII	GACCGA	2 cut(s)	648, 939
TasI	AATT	5 cut(s)	174, 181, 194, 405, 530
TatI	WGTACW	3 cut(s)	613, 675, 741
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	4 cut(s)	110, 221, 306, 341
Tru1I	TTAA	2 cut(s)	231, 257
Tru9I	TTAA	2 cut(s)	231, 257
TscAI	CASTG	3 cut(s)	15, 168, 439
TseFI	GTSAC	4 cut(s)	53, 237, 428, 491
TseI	GCWGC	3 cut(s)	200, 203, 212
Tsp45I	GTSAC	4 cut(s)	53, 237, 428, 491
TspDTI	ATGAA	3 cut(s)	704, 876, 984
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	15, 168, 439
VpaK11BI	GGWCC	3 cut(s)	508, 698, 1048
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	3 cut(s)	31, 620, 848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XspI	CTAG	1 cut(s)	651
ZrmI	AGTACT	1 cut(s)	743
Zsp2I	ATGCAT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.