Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Reverse (-)

21325232 .. 21329250

Gene Structure 4019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19050.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTCTTGGAGGAGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGCAGCAGCTTCGAAGAGTGCAGTGTCTCGGAAATGGACACTTTTGTTTTGTATTGGTTGCTTTTGTGCTGGAATGCTCTTCTCTGATAGAATGTGGTCAGTGCCTGAAATTAAAGACGTATCGAGGACAACAAGGGTTGACAATGAAACACCCAAGTTAGTTTCTGGTTGTGATCCGACAATTAAGGATGTAGAACATGAACCAAAGGCTGTTTATGGGGAAGTTTCAAAGACTCATCACGCTATACCCACGCTGGATAAAAAAATTTCAAATTTGGAGGTGGAATTAGCTGCTGCAAGGGCTGCACAGGAATCTATACTTAGTGGTTCACCGATTGCAGAAAATTTAAGAATTCCCGAGACAAGAAATAAAAGAAAGTATTTGATGGTCGTAGGAATAAACACTGCTTTTAGCAGTCGAAAGCGCAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGCGGATAAAAGAAATCAGCTTGAGGAAGAAAAGGGCATTGTAGTTCGCTTTGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTATTGAAGCAGAGGAGAAGAGGCATGGTGACATTATGCGGCTGGATCATGTTGAAGGCTATCTTGAATTGTCAGCAAAGACGAAGATATTCTTTGCCACTGCTGTTGCTTCGTGGGATGCAGATTTCTATGTCAAAGTTGATGATGATGTACATGTAAATATAGGAACACTTGGAGCAACTTTAGCTAGACACGGATCAAAACCCAGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCATTGCTCAAAAGGGAGTAAGATATCATGAGCCCGAGTACTGGAAATTCGGAGCAGAAGGGAACAAGTATTTCCGTCATGCCACAGGACAGCTCTATGCTATCTCAAAAGACTTGGCTAATTACATATCAAACAACCAGCATGTGCTACACAAATATGCGAATGAGGATGTTTCTTTGGGGTCGTGGTTCATTGGATTGGATATAGAGCAGATTGATGACCGAAGATTATGTTGTGGAACACCACCTGATTGTGAGTGGAAGGCTCAGGCAGGCAACGTCTGCGTTGCTTCATTTGACTGGAGCTGCAGCGGGATTTGCAAGTCTTCCGAGAGGATCAAGGAGGTCCACAAGCGCTGTGGAGAAGGTGAGAATGCTTTGTGGAATGCAGCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

414

Amino Acids

45.65

Weight (kDa)

8.35

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	512, 643, 1155
AclWI	GGATC	4 cut(s)	218, 657, 808, 1187
AcsI	RAATTY	5 cut(s)	315, 322, 394, 402, 890
AfaI	GTAC	2 cut(s)	756, 884
AfeI	AGCGCT	1 cut(s)	1199
AfiI	CCNNNNNNNGG	1 cut(s)	885
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	5 cut(s)	279, 321, 611, 659, 671
AjnI	CCWGG	1 cut(s)	809
AluBI	AGCT	8 cut(s)	59, 341, 529, 605, 791, 937, 1149, 1235
AluI	AGCT	8 cut(s)	59, 341, 529, 605, 791, 937, 1149, 1235
Alw26I	GTCTC	2 cut(s)	81, 404
AlwI	GGATC	4 cut(s)	218, 657, 808, 1187
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	2 cut(s)	407, 878
Aor51HI	AGCGCT	1 cut(s)	1199
ApeKI	GCWGC	8 cut(s)	53, 56, 341, 344, 353, 1149, 1152, 1232
ApoI	RAATTY	5 cut(s)	315, 322, 394, 402, 890
Asp700I	GAANNNNTTC	1 cut(s)	692
AspLEI	GCGC	2 cut(s)	477, 1200
AspS9I	GGNCC	2 cut(s)	839, 1189
AsuHPI	GGTGA	3 cut(s)	372, 644, 1223
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	2 cut(s)	407, 878
AvaII	GGWCC	2 cut(s)	839, 1189
BanII	GRGCYC	1 cut(s)	879
BbsI	GAAGAC	1 cut(s)	1161
BbvI	GCAGC	7 cut(s)	65, 68, 328, 331, 340, 1136, 1164
BccI	CCATC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BciT130I	CCWGG	1 cut(s)	811
BciVI	GTATCC	1 cut(s)	602
BcoDI	GTCTC	2 cut(s)	81, 404
BfaI	CTAG	1 cut(s)	792
BfmI	CTRYAG	1 cut(s)	1150
BfoI	RGCGCY	1 cut(s)	1201
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	9 cut(s)	54, 57, 342, 345, 354, 644, 1150, 1153, 1233
BlsI	GCNGC	9 cut(s)	55, 58, 343, 346, 355, 645, 1151, 1154, 1234
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	1 cut(s)	811
Bme18I	GGWCC	2 cut(s)	839, 1189
BmeT110I	CYCGRG	2 cut(s)	407, 878
BmgT120I	GGNCC	2 cut(s)	839, 1189
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	3 cut(s)	492, 712, 815
BpiI	GAAGAC	1 cut(s)	1161
BpmI	CTGGAG	1 cut(s)	1165
Bpu10I	CCTNAGC	1 cut(s)	1110
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	492, 551
BsaJI	CCNNGG	2 cut(s)	809, 810
Bsc4I	CCNNNNNNNGG	1 cut(s)	885
Bse1I	ACTGG	3 cut(s)	842, 890, 1148
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	2 cut(s)	809, 810
BseGI	GGATG	5 cut(s)	244, 507, 727, 830, 1018
BseLI	CCNNNNNNNGG	1 cut(s)	885
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	1 cut(s)	1124
BseNI	ACTGG	3 cut(s)	842, 890, 1148
BseXI	GCAGC	7 cut(s)	65, 68, 328, 331, 340, 1136, 1164
BsgI	GTGCAG	2 cut(s)	90, 339
BsiHKCI	CYCGRG	2 cut(s)	407, 878
BslI	CCNNNNNNNGG	1 cut(s)	885
BsmAI	GTCTC	2 cut(s)	81, 404
BsmI	GAATGC	3 cut(s)	129, 1222, 1234
BsoBI	CYCGRG	2 cut(s)	407, 878
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp1407I	TGTACA	1 cut(s)	754
Bsp143I	GATC	4 cut(s)	223, 649, 800, 1179
BspACI	CCGC	3 cut(s)	512, 643, 1155
BspCNI	CTCAG	1 cut(s)	1123
BspHI	TCATGA	1 cut(s)	871
BspMAI	CTGCAG	1 cut(s)	1154
BspPI	GGATC	4 cut(s)	218, 657, 808, 1187
BspQI	GCTCTTC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	846
BsrGI	TGTACA	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	842, 890, 1148
BssECI	CCNNGG	2 cut(s)	809, 810
BssMI	GATC	4 cut(s)	223, 649, 800, 1179
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	3 cut(s)	59, 134, 617
BstAPI	GCANNNNNTGC	2 cut(s)	353, 1125
BstAUI	TGTACA	1 cut(s)	754
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	1117
BstDEI	CTNAG	2 cut(s)	371, 1110
BstF5I	GGATG	5 cut(s)	244, 507, 727, 830, 1018
BstH2I	RGCGCY	1 cut(s)	1201
BstHHI	GCGC	2 cut(s)	477, 1200
BstKTI	GATC	4 cut(s)	226, 652, 803, 1182
BstMAI	GTCTC	2 cut(s)	81, 404
BstMBI	GATC	4 cut(s)	223, 649, 800, 1179
BstMWI	GCNNNNNNNGC	6 cut(s)	350, 353, 611, 788, 1125, 1161
BstNI	CCWGG	1 cut(s)	811
BstNSI	RCATGY	2 cut(s)	761, 989
BstSCI	CCNGG	1 cut(s)	809
BstSFI	CTRYAG	1 cut(s)	1150
BstV1I	GCAGC	7 cut(s)	65, 68, 328, 331, 340, 1136, 1164
BstV2I	GAAGAC	1 cut(s)	1161
BsuI	GTATCC	1 cut(s)	602
BtsCI	GGATG	5 cut(s)	244, 507, 727, 830, 1018
BtsI	GCAGTG	3 cut(s)	78, 453, 702
BtsIMutI	CAGTG	5 cut(s)	78, 156, 453, 580, 702
Cac8I	GCNNGC	1 cut(s)	1117
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	2 cut(s)	477, 1200
Cfr13I	GGNCC	2 cut(s)	839, 1189
Csp6I	GTAC	2 cut(s)	755, 883
CspCI	CAANNNNNGTGG	4 cut(s)	691, 726, 1183, 1218
CviAII	CATG	8 cut(s)	248, 629, 653, 758, 829, 872, 923, 986
CviQI	GTAC	2 cut(s)	755, 883
DdeI	CTNAG	2 cut(s)	371, 1110
DpnI	GATC	4 cut(s)	225, 651, 802, 1181
DpnII	GATC	4 cut(s)	223, 649, 800, 1179
Eam1104I	CTCTTC	3 cut(s)	59, 134, 617
EarI	CTCTTC	3 cut(s)	59, 134, 617
Eco24I	GRGCYC	1 cut(s)	879
Eco32I	GATATC	1 cut(s)	869
Eco47I	GGWCC	2 cut(s)	839, 1189
Eco47III	AGCGCT	1 cut(s)	1199
Eco88I	CYCGRG	2 cut(s)	407, 878
EcoRI	GAATTC	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	809
EcoRV	GATATC	1 cut(s)	869
EcoT22I	ATGCAT	1 cut(s)	830
EcoT38I	GRGCYC	1 cut(s)	879
FaeI	CATG	8 cut(s)	251, 632, 656, 761, 832, 875, 926, 989
FalI	AAGNNNNNCTT	4 cut(s)	651, 683, 680, 712
FatI	CATG	8 cut(s)	247, 628, 652, 757, 828, 871, 922, 985
FauI	CCCGC	1 cut(s)	1148
Fnu4HI	GCNGC	9 cut(s)	54, 57, 342, 345, 354, 644, 1150, 1153, 1233
FokI	GGATG	5 cut(s)	251, 514, 734, 837, 1025
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	9 cut(s)	54, 57, 342, 345, 354, 644, 1150, 1153, 1233
FspBI	CTAG	1 cut(s)	792
GlaI	GCGC	2 cut(s)	476, 1199
GluI	GCNGC	9 cut(s)	54, 57, 342, 345, 354, 644, 1150, 1153, 1233
GsuI	CTGGAG	1 cut(s)	1165
HaeII	RGCGCY	1 cut(s)	1201
HhaI	GCGC	2 cut(s)	477, 1200
Hin1II	CATG	8 cut(s)	251, 632, 656, 761, 832, 875, 926, 989
Hin6I	GCGC	2 cut(s)	475, 1198
HinP1I	GCGC	2 cut(s)	475, 1198
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	283, 362, 482
HphI	GGTGA	3 cut(s)	372, 644, 1223
Hpy166II	GTNNAC	3 cut(s)	190, 380, 1192
Hpy188I	TCNGA	5 cut(s)	81, 136, 228, 896, 1174
Hpy188III	TCNNGA	3 cut(s)	407, 668, 872
Hpy8I	GTNNAC	3 cut(s)	190, 380, 1192
HpyAV	CCTTC	4 cut(s)	653, 896, 1099, 1202
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	2 cut(s)	168, 1122
HpyCH4V	TGCA	9 cut(s)	71, 347, 356, 389, 725, 828, 1152, 1164, 1232
HpyF10VI	GCNNNNNNNGC	6 cut(s)	350, 353, 611, 788, 1125, 1161
HpyF3I	CTNAG	2 cut(s)	371, 1110
HpySE526I	ACGT	2 cut(s)	168, 1122
Hsp92II	CATG	8 cut(s)	251, 632, 656, 761, 832, 875, 926, 989
HspAI	GCGC	2 cut(s)	475, 1198
Kzo9I	GATC	4 cut(s)	223, 649, 800, 1179
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	4 cut(s)	12, 779, 896, 1146
Lsp1109I	GCAGC	7 cut(s)	65, 68, 328, 331, 340, 1136, 1164
LweI	GCATC	3 cut(s)	492, 712, 815
MaeI	CTAG	1 cut(s)	792
MaeII	ACGT	2 cut(s)	168, 1122
MaeIII	GTNAC	2 cut(s)	569, 632
MalI	GATC	4 cut(s)	225, 651, 802, 1181
MboI	GATC	4 cut(s)	223, 649, 800, 1179
MboII	GAAGA	7 cut(s)	76, 121, 548, 634, 700, 1080, 1161
MhlI	GDGCHC	1 cut(s)	879
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	830
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	3 cut(s)	162, 234, 398
MslI	CAYNNNNRTG	1 cut(s)	999
MspA1I	CMGCKG	1 cut(s)	1155
MspR9I	CCNGG	1 cut(s)	811
Mva1269I	GAATGC	3 cut(s)	129, 1222, 1234
MvaI	CCWGG	1 cut(s)	811
MwoI	GCNNNNNNNGC	6 cut(s)	350, 353, 611, 788, 1125, 1161
NdeII	GATC	4 cut(s)	223, 649, 800, 1179
NlaIII	CATG	8 cut(s)	251, 632, 656, 761, 832, 875, 926, 989
NmuCI	GTSAC	2 cut(s)	569, 632
NsiI	ATGCAT	1 cut(s)	830
NspI	RCATGY	2 cut(s)	761, 989
NspV	TTCGAA	1 cut(s)	62
PagI	TCATGA	1 cut(s)	871
PasI	CCCWGGG	1 cut(s)	810
PciI	ACATGT	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	134
PctI	GAATGC	3 cut(s)	129, 1222, 1234
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	362, 482
PkrI	GCNGC	9 cut(s)	55, 58, 343, 346, 355, 645, 1151, 1154, 1234
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PscI	ACATGT	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	809
PspPI	GGNCC	2 cut(s)	839, 1189
PstI	CTGCAG	1 cut(s)	1154
PstNI	CAGNNNCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	756, 884
RsaNI	GTAC	2 cut(s)	755, 883
RseI	CAYNNNNRTG	1 cut(s)	999
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	162, 234, 398
SatI	GCNGC	9 cut(s)	54, 57, 342, 345, 354, 644, 1150, 1153, 1233
Sau3AI	GATC	4 cut(s)	223, 649, 800, 1179
Sau96I	GGNCC	2 cut(s)	839, 1189
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	3 cut(s)	492, 712, 815
SfcI	CTRYAG	1 cut(s)	1150
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	2 cut(s)	839, 1189
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	2 cut(s)	507, 530
SmoI	CTYRAG	2 cut(s)	507, 530
SsiI	CCGC	3 cut(s)	512, 643, 1155
SspMI	CTAG	1 cut(s)	792
StyD4I	CCNGG	1 cut(s)	809
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	2 cut(s)	171, 1125
TaqI	TCGA	3 cut(s)	62, 173, 469
TaqII	GACCGA	1 cut(s)	1080
TatI	WGTACW	2 cut(s)	754, 882
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	362, 482
Tru1I	TTAA	3 cut(s)	162, 234, 398
Tru9I	TTAA	3 cut(s)	162, 234, 398
TscAI	CASTG	5 cut(s)	78, 156, 460, 580, 709
TseFI	GTSAC	2 cut(s)	569, 632
TseI	GCWGC	8 cut(s)	53, 56, 341, 344, 353, 1149, 1152, 1232
Tsp45I	GTSAC	2 cut(s)	569, 632
TspDTI	ATGAA	5 cut(s)	210, 264, 845, 1024, 1125
TspGWI	ACGGA	2 cut(s)	813, 908
TspRI	CASTG	5 cut(s)	78, 156, 460, 580, 709
VpaK11BI	GGWCC	2 cut(s)	839, 1189
XapI	RAATTY	5 cut(s)	315, 322, 394, 402, 890
XceI	RCATGY	2 cut(s)	761, 989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1199
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	1 cut(s)	792
ZrmI	AGTACT	1 cut(s)	884
Zsp2I	ATGCAT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.