Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009796

Physical Location & Seq

Genomic Coordinates Reverse (-)

31582108 .. 31587222

Gene Structure 5115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1216400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTCTTTGAAGAGCAGAGGAGGAGGAGGAGGAGGAGAGGCAGCAGCTTCGAAGAGTGCAGTGTCTCGGAAATGGACACTTTTGTTTTGTATTGGTTGCTTTTGTGCTGGAATGCTCTTCTCTGATAGAATGTGGTCAGTGCCTGAAATTAAAGACGTATCGAGGACAACAAGGGTTGACAATGAAACACCCAAGTTAGTTTCTGGTTGTGATCCAACAATTAAGGATGTAGAATATGAACCAAAGGATGTTTATGGGGAAGTTTCAAAGACTCATCACGCTATACACACGCTGGATAAAAAAATTTCAAATTTGGAGATGGAATTAGCTGCTGCAAAGGCTGCACAGGAATCTATACTTAGTGGTTCACCGATTGCAGAAAATTTAAGAATTCCCGCGACAAGAAATAAAAGAAAGTATTTGATGGTCGTAGGAATAAACACTGCTTTTAGCAGTCGAAAGCGCAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGCGGATAAAAGAAAGCAGCTTGAGGAAAAAAAGGGCATTGTAGTTCGCTTCGTAATAGGTCACAGTGCTACATCAGGTGGTATCCTTGATAGAGCTATTGAAGCAGAGGAGAAGAGGCATGGTGACATTATGCGGCTGGATCATGTTGAAGGCTATCTTGAATTGTCAGCAAAGACGAAGATATTCTTTGCCACTGCTGTTGCTTTGTGGGACGCAGATTTCTATGTCAAAGTTGATGATGATGTACATGTAAATATAGGAACACTTGGAGCAACTTTAGCTAGACACCGAACAAAACCCAGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGGGAGTAAGATATCATGAGCCCGAGTACTGGAAATTCGGAGCGGAAGGGAACAAGTATTTCCGTCATGCCACAGGACAGCTCTATGCTATCTCAAAAGACTTGGCTAATTACATATCAAACAACCAGCATGTGCTACACAAATATGCGAATGAGGATGTTTCTTTGGGTTCGTGGTTCATTGGATTGGATGTGGAGCAGATTGATGACCGGAGATTATGTTGTGGAACACCACCTGATTGTGAGTGGAAGGCTCAGGCAGGCAACGTCTGCGTTGCTTCATTTGACTGGAGCTGCAGCGGGATTTGCAAGTCTTCCGAGAGGATCAAGGAGGTCCACAAGCGCTGTGGAGAAGGTGAGAATGCTTTGTGGAATGCAGCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

410

Amino Acids

45.51

Weight (kDa)

8.78

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	22 - 114	1.7e-34	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	154 - 350	3.1e-50	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26940 AT4G26940
fragaria_vesca	FvH4_3g22900 FvH4_3g22900 FvH4_3g22900
malus_domestica	MD03G1199500.v1.1 MD11G1216400.v1.1
prunus_persica	Prupe.4G215100_v2.0.a1
pyrus_communis	pycom03g15110 pycom11g19050
rosa_chinensis	RchiOBHm_Chr5g0040251
rosa_laevigata	RLG00000033965
rosa_multiflora	Rmu_sc0002908.1_g000013 Rmu_sc0010162.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041080
rosa_rugosa	Rorug05G0184100
rosa_samantha	Rh5AG271000 Rh5BG274300 Rh5CG307200 Rh5DG282500
rosa_wichuraiana	Rw5G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	887
AccII	CGCG	1 cut(s)	398
AciI	CCGC	5 cut(s)	396, 500, 631, 887, 1143
AclWI	GGATC	3 cut(s)	206, 645, 1175
AcsI	RAATTY	5 cut(s)	303, 310, 382, 390, 878
AfaI	GTAC	2 cut(s)	744, 872
AfeI	AGCGCT	1 cut(s)	1187
AfiI	CCNNNNNNNGG	1 cut(s)	873
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	6 cut(s)	10, 267, 309, 599, 647, 659
AjnI	CCWGG	1 cut(s)	797
AluBI	AGCT	8 cut(s)	47, 329, 517, 593, 779, 925, 1137, 1223
AluI	AGCT	8 cut(s)	47, 329, 517, 593, 779, 925, 1137, 1223
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	3 cut(s)	206, 645, 1175
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	866
Aor51HI	AGCGCT	1 cut(s)	1187
ApeKI	GCWGC	9 cut(s)	41, 44, 329, 332, 341, 514, 1137, 1140, 1220
ApoI	RAATTY	5 cut(s)	303, 310, 382, 390, 878
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	2 cut(s)	465, 1188
AspS9I	GGNCC	2 cut(s)	827, 1177
AsuHPI	GGTGA	3 cut(s)	360, 632, 1211
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	866
AvaII	GGWCC	2 cut(s)	827, 1177
BanII	GRGCYC	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	1149
BbvI	GCAGC	8 cut(s)	53, 56, 316, 319, 328, 526, 1124, 1152
BccI	CCATC	2 cut(s)	313, 418
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	1 cut(s)	799
BciVI	GTATCC	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	1138
BfoI	RGCGCY	1 cut(s)	1189
BfuI	GTATCC	1 cut(s)	590
BmcAI	AGTACT	1 cut(s)	872
Bme1390I	CCNGG	1 cut(s)	799
Bme18I	GGWCC	2 cut(s)	827, 1177
BmeT110I	CYCGRG	1 cut(s)	866
BmgT120I	GGNCC	2 cut(s)	827, 1177
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	2 cut(s)	480, 803
BpiI	GAAGAC	1 cut(s)	1149
BpmI	CTGGAG	1 cut(s)	1153
Bpu10I	CCTNAGC	1 cut(s)	1098
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	480, 539
BsaJI	CCNNGG	2 cut(s)	797, 798
BsaWI	WCCGGW	1 cut(s)	1053
BsaXI	ACNNNNNCTCC	2 cut(s)	1048, 1078
Bsc4I	CCNNNNNNNGG	1 cut(s)	873
Bse1I	ACTGG	3 cut(s)	830, 878, 1136
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	2 cut(s)	797, 798
BseGI	GGATG	6 cut(s)	232, 253, 495, 818, 1006, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	873
BseMII	CTCAG	1 cut(s)	1112
BseNI	ACTGG	3 cut(s)	830, 878, 1136
BseRI	GAGGAG	7 cut(s)	33, 36, 39, 42, 45, 48, 620
BseXI	GCAGC	8 cut(s)	53, 56, 316, 319, 328, 526, 1124, 1152
BsgI	GTGCAG	2 cut(s)	78, 327
Bsh1236I	CGCG	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	1 cut(s)	1054
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	1 cut(s)	873
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	722
BsmI	GAATGC	3 cut(s)	117, 1210, 1222
BsoBI	CYCGRG	1 cut(s)	866
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp1407I	TGTACA	1 cut(s)	742
Bsp143I	GATC	3 cut(s)	211, 637, 1167
BspACI	CCGC	5 cut(s)	396, 500, 631, 887, 1143
BspCNI	CTCAG	1 cut(s)	1111
BspFNI	CGCG	1 cut(s)	398
BspHI	TCATGA	1 cut(s)	859
BspMAI	CTGCAG	1 cut(s)	1142
BspPI	GGATC	3 cut(s)	206, 645, 1175
BspQI	GCTCTTC	2 cut(s)	5, 122
BspT104I	TTCGAA	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	887
BsrGI	TGTACA	1 cut(s)	742
BsrI	ACTGG	3 cut(s)	830, 878, 1136
BssECI	CCNNGG	2 cut(s)	797, 798
BssMI	GATC	3 cut(s)	211, 637, 1167
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	4 cut(s)	5, 47, 122, 605
BstAPI	GCANNNNNTGC	2 cut(s)	341, 1113
BstAUI	TGTACA	1 cut(s)	742
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	1105
BstDEI	CTNAG	2 cut(s)	359, 1098
BstF5I	GGATG	6 cut(s)	232, 253, 495, 818, 1006, 1039
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	1189
BstHHI	GCGC	2 cut(s)	465, 1188
BstKTI	GATC	3 cut(s)	214, 640, 1170
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	211, 637, 1167
BstMWI	GCNNNNNNNGC	6 cut(s)	338, 341, 599, 776, 1113, 1149
BstNI	CCWGG	1 cut(s)	799
BstNSI	RCATGY	2 cut(s)	749, 977
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	1 cut(s)	1138
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	8 cut(s)	53, 56, 316, 319, 328, 526, 1124, 1152
BstV2I	GAAGAC	1 cut(s)	1149
BsuI	GTATCC	1 cut(s)	590
BtsCI	GGATG	6 cut(s)	232, 253, 495, 818, 1006, 1039
BtsI	GCAGTG	3 cut(s)	66, 441, 690
BtsIMutI	CAGTG	5 cut(s)	66, 144, 441, 568, 690
Cac8I	GCNNGC	1 cut(s)	1105
CaiI	CAGNNNCTG	1 cut(s)	143
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	2 cut(s)	465, 1188
Cfr13I	GGNCC	2 cut(s)	827, 1177
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	2 cut(s)	743, 871
CspCI	CAANNNNNGTGG	4 cut(s)	679, 714, 1171, 1206
CviAII	CATG	7 cut(s)	617, 641, 746, 817, 860, 911, 974
CviQI	GTAC	2 cut(s)	743, 871
DdeI	CTNAG	2 cut(s)	359, 1098
DpnI	GATC	3 cut(s)	213, 639, 1169
DpnII	GATC	3 cut(s)	211, 637, 1167
Eam1104I	CTCTTC	4 cut(s)	5, 47, 122, 605
EarI	CTCTTC	4 cut(s)	5, 47, 122, 605
Eco24I	GRGCYC	1 cut(s)	867
Eco32I	GATATC	1 cut(s)	857
Eco47I	GGWCC	2 cut(s)	827, 1177
Eco47III	AGCGCT	1 cut(s)	1187
Eco88I	CYCGRG	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	797
EcoRV	GATATC	1 cut(s)	857
EcoT22I	ATGCAT	1 cut(s)	818
EcoT38I	GRGCYC	1 cut(s)	867
FaeI	CATG	7 cut(s)	620, 644, 749, 820, 863, 914, 977
FalI	AAGNNNNNCTT	4 cut(s)	639, 671, 668, 700
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	7 cut(s)	616, 640, 745, 816, 859, 910, 973
FauI	CCCGC	2 cut(s)	403, 1136
FokI	GGATG	6 cut(s)	239, 260, 502, 825, 1013, 1046
FriOI	GRGCYC	1 cut(s)	867
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	2 cut(s)	464, 1187
GsuI	CTGGAG	1 cut(s)	1153
HaeII	RGCGCY	1 cut(s)	1189
HapII	CCGG	1 cut(s)	1054
HgaI	GACGC	1 cut(s)	719
HhaI	GCGC	2 cut(s)	465, 1188
Hin1II	CATG	7 cut(s)	620, 644, 749, 820, 863, 914, 977
Hin6I	GCGC	2 cut(s)	463, 1186
HinP1I	GCGC	2 cut(s)	463, 1186
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	271, 350, 470
HpaII	CCGG	1 cut(s)	1054
HphI	GGTGA	3 cut(s)	360, 632, 1211
Hpy166II	GTNNAC	3 cut(s)	178, 368, 1180
Hpy188I	TCNGA	4 cut(s)	69, 124, 884, 1162
Hpy188III	TCNNGA	2 cut(s)	656, 860
Hpy8I	GTNNAC	3 cut(s)	178, 368, 1180
HpyAV	CCTTC	4 cut(s)	641, 884, 1087, 1190
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4IV	ACGT	2 cut(s)	156, 1110
HpyCH4V	TGCA	8 cut(s)	59, 335, 344, 377, 816, 1140, 1152, 1220
HpyF10VI	GCNNNNNNNGC	6 cut(s)	338, 341, 599, 776, 1113, 1149
HpyF3I	CTNAG	2 cut(s)	359, 1098
HpySE526I	ACGT	2 cut(s)	156, 1110
Hsp92II	CATG	7 cut(s)	620, 644, 749, 820, 863, 914, 977
HspAI	GCGC	2 cut(s)	463, 1186
Kzo9I	GATC	3 cut(s)	211, 637, 1167
LguI	GCTCTTC	2 cut(s)	5, 122
LmnI	GCTCC	4 cut(s)	767, 884, 1039, 1134
Lsp1109I	GCAGC	8 cut(s)	53, 56, 316, 319, 328, 526, 1124, 1152
LweI	GCATC	2 cut(s)	480, 803
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	2 cut(s)	156, 1110
MaeIII	GTNAC	2 cut(s)	557, 620
MalI	GATC	3 cut(s)	213, 639, 1169
MbiI	CCGCTC	1 cut(s)	887
MboI	GATC	3 cut(s)	211, 637, 1167
MboII	GAAGA	6 cut(s)	22, 64, 109, 622, 688, 1149
MhlI	GDGCHC	1 cut(s)	867
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	239
Mph1103I	ATGCAT	1 cut(s)	818
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	3 cut(s)	150, 222, 386
MslI	CAYNNNNRTG	1 cut(s)	987
MspA1I	CMGCKG	1 cut(s)	1143
MspI	CCGG	1 cut(s)	1054
MspR9I	CCNGG	1 cut(s)	799
Mva1269I	GAATGC	3 cut(s)	117, 1210, 1222
MvaI	CCWGG	1 cut(s)	799
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	6 cut(s)	338, 341, 599, 776, 1113, 1149
NdeII	GATC	3 cut(s)	211, 637, 1167
NlaIII	CATG	7 cut(s)	620, 644, 749, 820, 863, 914, 977
NmuCI	GTSAC	2 cut(s)	557, 620
NsiI	ATGCAT	1 cut(s)	818
NspI	RCATGY	2 cut(s)	749, 977
NspV	TTCGAA	1 cut(s)	50
PagI	TCATGA	1 cut(s)	859
PasI	CCCWGGG	1 cut(s)	798
PciI	ACATGT	1 cut(s)	745
PciSI	GCTCTTC	2 cut(s)	5, 122
PctI	GAATGC	3 cut(s)	117, 1210, 1222
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	2 cut(s)	350, 470
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	745
Psp6I	CCWGG	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	797
PspPI	GGNCC	2 cut(s)	827, 1177
PstI	CTGCAG	1 cut(s)	1142
PstNI	CAGNNNCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	744, 872
RsaNI	GTAC	2 cut(s)	743, 871
RseI	CAYNNNNRTG	1 cut(s)	987
SapI	GCTCTTC	2 cut(s)	5, 122
SaqAI	TTAA	3 cut(s)	150, 222, 386
Sau3AI	GATC	3 cut(s)	211, 637, 1167
Sau96I	GGNCC	2 cut(s)	827, 1177
ScaI	AGTACT	1 cut(s)	872
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	799
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	2 cut(s)	480, 803
SfcI	CTRYAG	1 cut(s)	1138
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	2 cut(s)	827, 1177
SmiMI	CAYNNNNRTG	1 cut(s)	987
SmlI	CTYRAG	2 cut(s)	495, 518
SmoI	CTYRAG	2 cut(s)	495, 518
SsiI	CCGC	5 cut(s)	396, 500, 631, 887, 1143
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	1 cut(s)	797
TaaI	ACNGT	1 cut(s)	563
TaiI	ACGT	2 cut(s)	159, 1113
TaqI	TCGA	3 cut(s)	50, 161, 457
TatI	WGTACW	2 cut(s)	742, 870
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	2 cut(s)	350, 470
Tru1I	TTAA	3 cut(s)	150, 222, 386
Tru9I	TTAA	3 cut(s)	150, 222, 386
TscAI	CASTG	5 cut(s)	66, 144, 448, 568, 697
TseFI	GTSAC	2 cut(s)	557, 620
TseI	GCWGC	9 cut(s)	41, 44, 329, 332, 341, 514, 1137, 1140, 1220
Tsp45I	GTSAC	2 cut(s)	557, 620
TspDTI	ATGAA	5 cut(s)	198, 252, 833, 1012, 1113
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	5 cut(s)	66, 144, 448, 568, 697
VpaK11BI	GGWCC	2 cut(s)	827, 1177
XapI	RAATTY	5 cut(s)	303, 310, 382, 390, 878
XceI	RCATGY	2 cut(s)	749, 977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1187
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	1 cut(s)	780
ZrmI	AGTACT	1 cut(s)	872
Zsp2I	ATGCAT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.