FvH4_3g23080

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007495
Physical Location & Seq
Forward (+)
16172002 .. 16173888
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23080.t1

Sequence Viewer

Length: 1287 bp
ATGGCCACTATTCAAGCTTCTTTTTGTTCTGCTTCATTTTCTTCAGCTTCCTCTAGAAAAACCAAAGCTACTCTTTATTCCCAAAACTTTGAATCATCCCATCTTTCAGTTCCCAGGCTCCTGGTTAATGAACTGAATCAAAGAAATGGGTTACTCAACCTAACAGCCACTTCATCTGATTTAGACTTGAACCCAAAATCTGATAACAGAAAAGGATCAAATCTTGGTGACTCTATTTCAGATTCAAACTTAGTCCAAGAGCTCTATGCAATAATGGAAATAGTGGTTGATAGAATAGAAATGCACAACAACATTAAGGCTCAGAGGGACAACTGGAATGGTCTGCTTCTCAACTCTGTGAATGGGATGACAGCCACAGCTGCAATCATGGCTGGACTAGCATGTGTCTCTGGATCTGGACCCTCCATTTTGTCTCTCAAGATCTCATCAAGTCTCCTATACATGGCTGTGACTGGGATTGTCCTAGTGATGAACAAGATCCAACCTTCACAGCTGGCAGAGGAACAGAGAAATGCTTCAAGGCTGTTCAAAAAGCTTCATGAAGAAATCAAAACCACTTTGGCTATCAAAAACCCAGTCACTTCTTTTGATGTGAAAGTTGCAATGGAAAAGGTTTTGGCTTTGGATAAAGCATTCCCACTTCCTTTACTGGGAACCATGATTGAGAAGTTTCCTCAAGTAGTGGAGCCAGCAGTGTGGTGGCCTGAGGAAGAACCCAAGTGCCATGATCAAAACATGAGTGACATGTTTGAGAGGAATGGGTGGAATGAGAATCTTGAAGAGGAAATGAAGGAGGTTTTGGGTGTGATGAAGGGAAGAGACTCTGCAGAATATGCAAGGCTAAGCAATATGGTGTTGAAGGTCAACAAGTTCTTGGCTTTCTGTGGTCCTTTGCTAACTGGGTCTGCTGCAATTGGGTCATGTCTAATTGGGTTGCCTGGTTTTGGGTCATGGGGTGCTGCTTTTGGTGTGGTTTTGGGGGCTTTGGGCACTGTGGTTAACAGCCTGGAGCATGGGGGTCAAGTTGGGATGGTGTTTGAGATGTATAGAAGCTCTGCTGGGTTCTTCAAGCTCATGGAGGAGACCATCGAGTCAAATTTGAAGGAAAGAGAGGTTGGGGATAGAGAAAATGGGGAGCTGTTTGAAGTGAAAGTGGCTCTTCAGCTTGGGAGGAGTTTGTCTGAGCTCAGAGACCTTGCAAGAGCTTCATCTTTGTCTTCAAAATTTCAACAGGCCAAAGAAGAATGTGCAAGCAAGCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

429

Amino Acids

46.82

Weight (kDa)

5.62

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroplast_duf PF14476 88 - 404 5e-146 Petal formation-expressed
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1111
AclWI GGATC 3 cut(s) 223, 421, 493
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 1117, 1244
AcuI CTGAAG 2 cut(s) 27, 1166
AfiI CCNNNNNNNGG 3 cut(s) 463, 671, 965
AflIII ACRYGT 1 cut(s) 765
AjnI CCWGG 4 cut(s) 113, 120, 958, 1026
AjuI GAANNNNNNNTTGG 4 cut(s) 803, 835, 1119, 1151
Alw21I GWGCWC 2 cut(s) 264, 1209
Alw26I GTCTC 6 cut(s) 412, 438, 458, 834, 1097, 1206
AlwI GGATC 3 cut(s) 223, 421, 493
AoxI GGCC 3 cut(s) 3, 722, 1254
ApeKI GCWGC 3 cut(s) 380, 929, 980
ApoI RAATTY 2 cut(s) 1117, 1244
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
Asp700I GAANNNNTTC 1 cut(s) 535
AspS9I GGNCC 2 cut(s) 419, 908
AsuHPI GGTGA 1 cut(s) 239
AvaII GGWCC 2 cut(s) 419, 908
AxyI CCTNAGG 1 cut(s) 726
BaeGI GKGCMC 1 cut(s) 1013
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 264, 1209
BbsI GAAGAC 1 cut(s) 1230
Bbv12I GWGCWC 2 cut(s) 264, 1209
BbvI GCAGC 3 cut(s) 367, 916, 967
BccI CCATC 3 cut(s) 108, 1045, 1115
BciT130I CCWGG 4 cut(s) 115, 122, 960, 1028
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 6 cut(s) 412, 438, 458, 834, 1097, 1206
BfaI CTAG 3 cut(s) 54, 398, 485
BfmI CTRYAG 1 cut(s) 846
BglII AGATCT 1 cut(s) 441
BisI GCNGC 3 cut(s) 381, 930, 981
BlpI GCTNAGC 1 cut(s) 863
BlsI GCNGC 3 cut(s) 382, 931, 982
Bme1390I CCNGG 4 cut(s) 115, 122, 960, 1028
Bme18I GGWCC 2 cut(s) 419, 908
BmgT120I GGNCC 2 cut(s) 419, 908
BmiI GGNNCC 4 cut(s) 119, 421, 676, 708
BmrFI CCNGG 4 cut(s) 115, 122, 960, 1028
BmrI ACTGGG 4 cut(s) 483, 590, 680, 930
BmuI ACTGGG 4 cut(s) 483, 590, 680, 930
BpiI GAAGAC 1 cut(s) 1230
BpmI CTGGAG 1 cut(s) 1049
Bpu1102I GCTNAGC 1 cut(s) 863
BpuEI CTTGAG 2 cut(s) 422, 681
BsaI GGTCTC 2 cut(s) 1097, 1206
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 671, 965
Bse1I ACTGG 5 cut(s) 338, 478, 596, 675, 925
Bse21I CCTNAGG 1 cut(s) 726
Bse3DI GCAATG 1 cut(s) 630
BseBI CCWGG 4 cut(s) 115, 122, 960, 1028
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 95, 372, 1056
BseLI CCNNNNNNNGG 3 cut(s) 463, 671, 965
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 4 cut(s) 335, 717, 1194, 1222
BseNI ACTGG 5 cut(s) 338, 478, 596, 675, 925
BseRI GAGGAG 2 cut(s) 1115, 1207
BseSI GKGCMC 1 cut(s) 1013
BseXI GCAGC 3 cut(s) 367, 916, 967
BseYI CCCAGC 1 cut(s) 1079
BshFI GGCC 3 cut(s) 5, 724, 1256
BsiHKAI GWGCWC 2 cut(s) 264, 1209
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 3 cut(s) 463, 671, 965
BsmAI GTCTC 6 cut(s) 412, 438, 458, 834, 1097, 1206
BsmFI GGGAC 1 cut(s) 341
BsmI GAATGC 1 cut(s) 653
BsnI GGCC 3 cut(s) 5, 724, 1256
Bso31I GGTCTC 2 cut(s) 1097, 1206
Bsp1286I GDGCHC 3 cut(s) 264, 1013, 1209
Bsp143I GATC 5 cut(s) 215, 413, 441, 498, 748
Bsp1720I GCTNAGC 1 cut(s) 863
BspANI GGCC 3 cut(s) 5, 724, 1256
BspCNI CTCAG 4 cut(s) 334, 718, 1195, 1221
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 4 cut(s) 119, 421, 676, 708
BspMAI CTGCAG 1 cut(s) 850
BspPI GGATC 3 cut(s) 223, 421, 493
BspQI GCTCTTC 1 cut(s) 1185
BspTNI GGTCTC 2 cut(s) 1097, 1206
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 5 cut(s) 338, 478, 596, 675, 925
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 5 cut(s) 215, 413, 441, 498, 748
Bst2UI CCWGG 4 cut(s) 115, 122, 960, 1028
Bst4CI ACNGT 1 cut(s) 1015
Bst6I CTCTTC 3 cut(s) 795, 832, 1185
BstAPI GCANNNNNTGC 1 cut(s) 854
BstC8I GCNNGC 4 cut(s) 516, 711, 1273, 1277
BstDEI CTNAG 6 cut(s) 250, 321, 726, 863, 1203, 1208
BstF5I GGATG 3 cut(s) 95, 372, 1056
BstKTI GATC 5 cut(s) 218, 416, 444, 501, 751
BstMAI GTCTC 6 cut(s) 412, 438, 458, 834, 1097, 1206
BstMBI GATC 5 cut(s) 215, 413, 441, 498, 748
BstMWI GCNNNNNNNGC 4 cut(s) 380, 389, 398, 854
BstNI CCWGG 4 cut(s) 115, 122, 960, 1028
BstNSI RCATGY 2 cut(s) 405, 769
BstSCI CCNGG 4 cut(s) 113, 120, 958, 1026
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 1013
BstV1I GCAGC 3 cut(s) 367, 916, 967
BstV2I GAAGAC 1 cut(s) 1230
BstX2I RGATCY 3 cut(s) 413, 441, 498
BstXI CCANNNNNNTGG 2 cut(s) 121, 717
BstYI RGATCY 3 cut(s) 413, 441, 498
Bsu36I CCTNAGG 1 cut(s) 726
BsuRI GGCC 3 cut(s) 5, 724, 1256
BtsCI GGATG 3 cut(s) 95, 372, 1056
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 2 cut(s) 720, 1011
Cac8I GCNNGC 4 cut(s) 516, 711, 1273, 1277
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 2 cut(s) 419, 908
DdeI CTNAG 6 cut(s) 250, 321, 726, 863, 1203, 1208
DpnI GATC 5 cut(s) 217, 415, 443, 500, 750
DpnII GATC 5 cut(s) 215, 413, 441, 498, 748
DrdI GACNNNNNNGTC 1 cut(s) 1111
DseDI GACNNNNNNGTC 1 cut(s) 1111
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 795, 832, 1185
EarI CTCTTC 3 cut(s) 795, 832, 1185
Ecl136II GAGCTC 2 cut(s) 262, 1207
Eco24I GRGCYC 2 cut(s) 264, 1209
Eco31I GGTCTC 2 cut(s) 1097, 1206
Eco47I GGWCC 2 cut(s) 419, 908
Eco53kI GAGCTC 2 cut(s) 262, 1207
Eco57I CTGAAG 2 cut(s) 27, 1166
Eco81I CCTNAGG 1 cut(s) 726
EcoICRI GAGCTC 2 cut(s) 262, 1207
EcoRII CCWGG 4 cut(s) 113, 120, 958, 1026
EcoT38I GRGCYC 2 cut(s) 264, 1209
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 1164, 1196
FaqI GGGAC 1 cut(s) 341
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 3 cut(s) 381, 930, 981
FokI GGATG 3 cut(s) 82, 379, 1063
FriOI GRGCYC 2 cut(s) 264, 1209
Fsp4HI GCNGC 3 cut(s) 381, 930, 981
FspBI CTAG 3 cut(s) 54, 398, 485
GluI GCNGC 3 cut(s) 381, 930, 981
GsaI CCCAGC 1 cut(s) 1083
GsuI CTGGAG 1 cut(s) 1049
HaeIII GGCC 3 cut(s) 5, 724, 1256
HincII GTYRAC 2 cut(s) 886, 1021
HindII GTYRAC 2 cut(s) 886, 1021
HindIII AAGCTT 2 cut(s) 15, 554
HinfI GANTC 7 cut(s) 92, 136, 230, 242, 793, 842, 1112
HpaI GTTAAC 1 cut(s) 1021
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 886, 1021
Hpy188I TCNGA 6 cut(s) 178, 202, 241, 324, 1204, 1211
Hpy188III TCNNGA 6 cut(s) 54, 411, 417, 439, 560, 797
Hpy8I GTNNAC 2 cut(s) 886, 1021
HpyAV CCTTC 5 cut(s) 516, 805, 826, 874, 1117
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4V TGCA 9 cut(s) 269, 304, 383, 623, 848, 857, 932, 1220, 1271
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 389, 398, 854
HpyF3I CTNAG 6 cut(s) 250, 321, 726, 863, 1203, 1208
Ksp22I TGATCA 1 cut(s) 748
KspAI GTTAAC 1 cut(s) 1021
Kzo9I GATC 5 cut(s) 215, 413, 441, 498, 748
LguI GCTCTTC 1 cut(s) 1185
LmnI GCTCC 4 cut(s) 123, 706, 1030, 1156
Lsp1109I GCAGC 3 cut(s) 367, 916, 967
MaeI CTAG 3 cut(s) 54, 398, 485
MaeIII GTNAC 5 cut(s) 150, 227, 469, 598, 761
MalI GATC 5 cut(s) 217, 415, 443, 500, 750
MboI GATC 5 cut(s) 215, 413, 441, 498, 748
MboII GAAGA 9 cut(s) 33, 575, 743, 812, 849, 1078, 1172, 1230, 1274
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 3 cut(s) 413, 441, 498
MhlI GDGCHC 3 cut(s) 264, 1013, 1209
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 933, 948, 1117, 1244
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 224, 836, 1121
MmeI TCCRAC 1 cut(s) 526
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 535
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 126, 315, 1020
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 380, 514
MspR9I CCNGG 4 cut(s) 115, 122, 960, 1028
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 653
MvaI CCWGG 4 cut(s) 115, 122, 960, 1028
MwoI GCNNNNNNNGC 4 cut(s) 380, 389, 398, 854
NdeII GATC 5 cut(s) 215, 413, 441, 498, 748
NlaIV GGNNCC 4 cut(s) 119, 421, 676, 708
NmuCI GTSAC 4 cut(s) 227, 469, 598, 761
NspI RCATGY 2 cut(s) 405, 769
PagI TCATGA 1 cut(s) 559
PciI ACATGT 1 cut(s) 765
PciSI GCTCTTC 1 cut(s) 1185
PctI GAATGC 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 4 cut(s) 92, 136, 242, 793
PkrI GCNGC 3 cut(s) 382, 931, 982
PleI GAGTC 3 cut(s) 224, 836, 1120
PpsI GAGTC 3 cut(s) 224, 836, 1120
PscI ACATGT 1 cut(s) 765
Psp124BI GAGCTC 2 cut(s) 264, 1209
Psp6I CCWGG 4 cut(s) 113, 120, 958, 1026
PspFI CCCAGC 1 cut(s) 1079
PspGI CCWGG 4 cut(s) 113, 120, 958, 1026
PspN4I GGNNCC 4 cut(s) 119, 421, 676, 708
PspPI GGNCC 2 cut(s) 419, 908
PstI CTGCAG 1 cut(s) 850
PsuI RGATCY 3 cut(s) 413, 441, 498
PvuII CAGCTG 2 cut(s) 380, 514
RseI CAYNNNNRTG 1 cut(s) 467
SacI GAGCTC 2 cut(s) 264, 1209
SapI GCTCTTC 1 cut(s) 1185
SaqAI TTAA 3 cut(s) 126, 315, 1020
SatI GCNGC 3 cut(s) 381, 930, 981
Sau3AI GATC 5 cut(s) 215, 413, 441, 498, 748
Sau96I GGNCC 2 cut(s) 419, 908
SchI GAGTC 3 cut(s) 224, 836, 1121
ScrFI CCNGG 4 cut(s) 115, 122, 960, 1028
SduI GDGCHC 3 cut(s) 264, 1013, 1209
SfcI CTRYAG 1 cut(s) 846
SinI GGWCC 2 cut(s) 419, 908
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 437, 696
SmoI CTYRAG 2 cut(s) 437, 696
Sse9I AATT 4 cut(s) 933, 948, 1117, 1244
SspMI CTAG 3 cut(s) 54, 398, 485
SstI GAGCTC 2 cut(s) 264, 1209
StyD4I CCNGG 4 cut(s) 113, 120, 958, 1026
TaaI ACNGT 1 cut(s) 1015
TaqI TCGA 1 cut(s) 1110
TasI AATT 4 cut(s) 933, 948, 1117, 1244
TfiI GAWTC 4 cut(s) 92, 136, 242, 793
Tru1I TTAA 3 cut(s) 126, 315, 1020
Tru9I TTAA 3 cut(s) 126, 315, 1020
TscAI CASTG 2 cut(s) 720, 1018
TseFI GTSAC 4 cut(s) 227, 469, 598, 761
TseI GCWGC 3 cut(s) 380, 929, 980
Tsp45I GTSAC 4 cut(s) 227, 469, 598, 761
TspDTI ATGAA 9 cut(s) 24, 144, 162, 506, 548, 576, 824, 845, 1218
TspRI CASTG 2 cut(s) 720, 1018
VpaK11BI GGWCC 2 cut(s) 419, 908
XapI RAATTY 2 cut(s) 1117, 1244
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 2 cut(s) 405, 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 717
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 3 cut(s) 54, 398, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.