Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007495

Physical Location & Seq

Genomic Coordinates Reverse (-)

18009146 .. 18012807

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCAATTTAATTTCGAACCTACTGTCAGTAACAACACTCCAACTAGTAAGAAGAATAGGACTGGGATGATTGTGGGGATTGTTCTTGGTGGTGGAGTTTTAATTCTGGTGCGGGTAGTTTTCTTCATTGTTCGAAGAAGAAAAAGGCCCGACTTCAATGATGTCGAAGAGCTGTTAGGGATTGATATTGGACCACTCACTTTCAGTTATTCCGCACTGAAGTCGGCTACGAATGACTTTAGTCCGGAAAACAAGCTTGGAGAGGGAGGATTTGGACCTGTCTACAAAAATTTATGCAAAAGAGTCTACATATCATTTGGCTGCCACTGTTCCTTGGTCTACTGTTTAACGTTGTCTGCATCTTTCATTCTTATTCAGAGCTTTGGGACAGTGTGCACTCAGTTATGGCATCGGATATCAGACACAGAAGAGGAAAAAGATTGTTGGAACAAAATGATAGTGAAGATTGTTGGAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroplast_duf

Protein Analysis

160

Amino Acids

17.92

Weight (kDa)

8.94

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007495)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23080
malus_domestica	MD11G1214100.v1.1
prunus_persica	Prupe.4G217100_v2.0.a1
pyrus_communis	pycom11g18860
rosa_chinensis	RchiOBHm_Chr5g0040591 RchiOBHm_Chr5g0040661
rosa_laevigata	RLG00000033990 RLG00000033992
rosa_multiflora	Rmu_co8282641.1_g000001 Rmu_co8333007.1_g000001 Rmu_sc0003916.1_g000011 Rmu_sc0026887.1_g000001
rosa_roxburghii	Rroxscaffold_1G00040020 Rroxscaffold_1G00040050 Rroxscaffold_1G00040080 Rroxscaffold_1G00040790
rosa_rugosa	Rorug05G0185900 Rorug05G0186100
rosa_samantha	Rh5BG276900 Rh5BG277500 Rh5CG308400 Rh5CG308600 Rh5DG285500
rosa_wichuraiana	Rw5G025530 Rw5G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	282, 306, 339
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	2 cut(s)	112, 213
AclI	AACGTT	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	157
AhlI	ACTAGT	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	3 cut(s)	172, 256, 381
AluI	AGCT	3 cut(s)	172, 256, 381
Alw21I	GWGCWC	1 cut(s)	398
Alw44I	GTGCAC	1 cut(s)	394
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	146
ApaLI	GTGCAC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspS9I	GGNCC	3 cut(s)	147, 191, 275
AsuII	TTCGAA	2 cut(s)	15, 133
AvaII	GGWCC	2 cut(s)	191, 275
BaeGI	GKGCMC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	191, 275
BmgT120I	GGNCC	3 cut(s)	147, 191, 275
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	368, 418
BmuI	ACTGGG	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	240
Bpu14I	TTCGAA	2 cut(s)	15, 133
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	67
BseAI	TCCGGA	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	308
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	148
Bsp119I	TTCGAA	2 cut(s)	15, 133
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	244
BspACI	CCGC	2 cut(s)	112, 213
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	162
BspT104I	TTCGAA	2 cut(s)	15, 133
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	4 cut(s)	25, 329, 344, 391
Bst6I	CTCTTC	2 cut(s)	162, 423
BstBI	TTCGAA	2 cut(s)	15, 133
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	72
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	3 cut(s)	215, 325, 396
Cfr13I	GGNCC	3 cut(s)	147, 191, 275
CviJI	RGCY	6 cut(s)	148, 172, 227, 256, 321, 381
CviKI_1	RGCY	6 cut(s)	148, 172, 227, 256, 321, 381
DdeI	CTNAG	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	162, 423
EarI	CTCTTC	2 cut(s)	162, 423
Eco130I	CCWWGG	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	191, 275
Eco57I	CTGAAG	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaiI	YATR	3 cut(s)	295, 311, 406
FaqI	GGGAC	1 cut(s)	400
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	3 cut(s)	282, 306, 339
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	245
Hpy166II	GTNNAC	4 cut(s)	283, 307, 340, 396
Hpy188I	TCNGA	3 cut(s)	378, 414, 421
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	4 cut(s)	283, 307, 340, 396
HpyCH4III	ACNGT	4 cut(s)	25, 329, 344, 391
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	4, 297, 359, 396
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	162
LpnPI	CCDG	4 cut(s)	48, 92, 258, 291
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	368, 418
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	29
MboII	GAAGA	7 cut(s)	64, 115, 147, 150, 179, 440, 475
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	4 cut(s)	5, 10, 102, 289
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	3 cut(s)	65, 425, 451
MnlI	CCTC	3 cut(s)	256, 260, 424
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	3 cut(s)	9, 101, 347
MspI	CCGG	1 cut(s)	245
NspV	TTCGAA	2 cut(s)	15, 133
PciSI	GCTCTTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PshAI	GACNNNNGTC	1 cut(s)	240
Psp1406I	AACGTT	1 cut(s)	350
PspPI	GGNCC	3 cut(s)	147, 191, 275
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	9, 101, 347
SatI	GCNGC	1 cut(s)	322
Sau96I	GGNCC	3 cut(s)	147, 191, 275
SchI	GAGTC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	6 cut(s)	22, 174, 258, 280, 353, 383
SfaNI	GCATC	2 cut(s)	368, 418
SfuI	TTCGAA	2 cut(s)	15, 133
SinI	GGWCC	2 cut(s)	191, 275
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	4 cut(s)	5, 10, 102, 289
SsiI	CCGC	2 cut(s)	112, 213
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	4 cut(s)	25, 329, 344, 391
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	3 cut(s)	15, 133, 165
TasI	AATT	4 cut(s)	5, 10, 102, 289
Tru1I	TTAA	3 cut(s)	9, 101, 347
Tru9I	TTAA	3 cut(s)	9, 101, 347
TscAI	CASTG	3 cut(s)	222, 332, 396
TseI	GCWGC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	115, 355
TspRI	CASTG	3 cut(s)	222, 332, 396
VneI	GTGCAC	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	191, 275
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	3 cut(s)	282, 306, 339
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.