Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8282641.1

Orthogroup ID

OG0007495

Physical Location & Seq

Genomic Coordinates Reverse (-)

360 .. 818

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8282641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgaagggaagggactccgcagaatatgcaaggctaagcaacatggtcttgaaggtcaacaaggtcttggctttctgtggtcctttgcttaccgggtcggctgcaattgggtcaggtcttattgggttgcctggttttgggtcatggggtgctgttttgggtgtggttttgggggctttgggcactgtggttaacagtttggagcatggagggcaagttggaatggtgtttgagatgtataggagctctgctgggttcttcaagctcatggaggagacgattgagtcaactttgaaggaaagagaggttggggatagagaaaatggggagctctttgaagtgaaggtggctcttcagcttggtaggagtttgtctgagctcagagaccttgcaagtgcttcatctttgtcttcaagaattcaacaggccaaagaagaatttgcaagcaagcttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroplast_duf

Protein Analysis

152

Amino Acids

16.21

Weight (kDa)

5.9

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007495)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23080
malus_domestica	MD11G1214100.v1.1
prunus_persica	Prupe.4G217100_v2.0.a1
pyrus_communis	pycom11g18860
rosa_chinensis	RchiOBHm_Chr5g0040591 RchiOBHm_Chr5g0040661
rosa_laevigata	RLG00000033990 RLG00000033992
rosa_multiflora	Rmu_co8282641.1_g000001 Rmu_co8333007.1_g000001 Rmu_sc0003916.1_g000011 Rmu_sc0026887.1_g000001
rosa_roxburghii	Rroxscaffold_1G00040020 Rroxscaffold_1G00040050 Rroxscaffold_1G00040080 Rroxscaffold_1G00040790
rosa_rugosa	Rorug05G0185900 Rorug05G0186100
rosa_samantha	Rh5BG276900 Rh5BG277500 Rh5CG308400 Rh5CG308600 Rh5DG285500
rosa_wichuraiana	Rw5G025530 Rw5G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
AciI	CCGC	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	417, 437
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	6 cut(s)	52, 262, 295, 338, 414, 422
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	6 cut(s)	246, 265, 331, 358, 379, 451
AluI	AGCT	6 cut(s)	246, 265, 331, 358, 379, 451
Alw21I	GWGCWC	3 cut(s)	248, 333, 381
Alw26I	GTCTC	2 cut(s)	269, 378
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	417, 437
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	185
BanII	GRGCYC	3 cut(s)	248, 333, 381
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	3 cut(s)	248, 333, 381
BbvI	GCAGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	269, 378
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	94, 132
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	94, 132
BpiI	GAAGAC	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	366, 394
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	428
BsiHKAI	GWGCWC	3 cut(s)	248, 333, 381
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	269, 378
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	4 cut(s)	185, 248, 333, 381
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	367, 393
BspQI	GCTCTTC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	187, 197
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	445, 449
BstDEI	CTNAG	3 cut(s)	35, 375, 380
BstMAI	GTCTC	2 cut(s)	269, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 211
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	92, 130
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	445, 449
Cfr13I	GGNCC	1 cut(s)	80
CviAII	CATG	4 cut(s)	43, 144, 206, 268
DdeI	CTNAG	3 cut(s)	35, 375, 380
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	3 cut(s)	246, 331, 379
Eco24I	GRGCYC	3 cut(s)	248, 333, 381
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	80
Eco53kI	GAGCTC	3 cut(s)	246, 331, 379
Eco57I	CTGAAG	1 cut(s)	338
EcoICRI	GAGCTC	3 cut(s)	246, 331, 379
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	3 cut(s)	248, 333, 381
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	46, 147, 209, 271
FaiI	YATR	6 cut(s)	27, 44, 145, 207, 240, 269
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	4 cut(s)	42, 143, 205, 267
Fnu4HI	GCNGC	1 cut(s)	102
FriOI	GRGCYC	3 cut(s)	248, 333, 381
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	4 cut(s)	46, 147, 209, 271
HincII	GTYRAC	3 cut(s)	58, 193, 288
HindII	GTYRAC	3 cut(s)	58, 193, 288
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	2 cut(s)	14, 284
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	3 cut(s)	58, 193, 288
Hpy188I	TCNGA	2 cut(s)	376, 383
Hpy188III	TCNNGA	2 cut(s)	49, 414
Hpy8I	GTNNAC	3 cut(s)	58, 193, 288
HpyAV	CCTTC	4 cut(s)	3, 46, 289, 337
HpyCH4III	ACNGT	2 cut(s)	187, 197
HpyCH4V	TGCA	4 cut(s)	29, 104, 392, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 211
HpyF3I	CTNAG	3 cut(s)	35, 375, 380
Hsp92II	CATG	4 cut(s)	46, 147, 209, 271
KspAI	GTTAAC	1 cut(s)	193
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	3 cut(s)	202, 243, 328
LpnPI	CCDG	6 cut(s)	99, 106, 117, 144, 237, 410
Lsp1109I	GCAGC	1 cut(s)	88
MboII	GAAGA	4 cut(s)	250, 344, 402, 446
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	4 cut(s)	185, 248, 333, 381
MluCI	AATT	3 cut(s)	105, 417, 437
MlyI	GAGTC	2 cut(s)	8, 293
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	203, 265, 298
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 132
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	26, 211
NciI	CCSGG	1 cut(s)	94
NlaIII	CATG	4 cut(s)	46, 147, 209, 271
PciSI	GCTCTTC	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	8, 292
PpsI	GAGTC	2 cut(s)	8, 292
Psp124BI	GAGCTC	3 cut(s)	248, 333, 381
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	80
SacI	GAGCTC	3 cut(s)	248, 333, 381
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	8, 293
ScrFI	CCNGG	2 cut(s)	94, 132
SduI	GDGCHC	4 cut(s)	185, 248, 333, 381
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	3 cut(s)	105, 417, 437
SsiI	CCGC	1 cut(s)	18
SstI	GAGCTC	3 cut(s)	248, 333, 381
StyD4I	CCNGG	2 cut(s)	92, 130
TaaI	ACNGT	2 cut(s)	187, 197
TasI	AATT	3 cut(s)	105, 417, 437
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	17, 390
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	2 cut(s)	417, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.