Rh5CG308600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007495
Physical Location & Seq
Reverse (-)
34083561 .. 34084574
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG308600.1

Sequence Viewer

Length: 1014 bp
ATGGAAATTGTGGCAGATAGAATAGAAATGCACAACAACATAAAGGCGCAGAGGGACAACTGGAATGTTCTGCTTCTCAACTCTGTGAATGGAATGACAGCCACAGCTGCAATCATGGCGGGACTTGCATCTGTCTCTGGATTTGGACCGTCCATTTTGTCTCTCAAGATCTCATCAAGTCTCCTATACATGGCTGTGACTGGGATTGTTCTAGTGATGAACAAGATCCAACCTTCACAGCTAGCAGAGGAACAAAGAAATGCTTCAAGGCTGTTCAAGAAGCTTCATGAAGAAATCAAAACCACTTTGGCTCTCAAAAGCCCAGTTACTTCTTATGATGTGAAAGTCACAATGGAAAAGGTTTTGGCTTTGGATAAGGCATACCCACTTCCCTTACTTGGAACCATGATTGAGAAGTTTCCTCAAATTGTGGAGCCAGCTGTGTGGTGGCCTGAGGAAGAACCCAAGTGCCATGATCCAAACATGAGTGACAAGTTTGAGAGGAATGGGTGGAATGAGAATCTTGAAGAGGAACTGAAGGAGGTTTTGGGTGTAATGAAGGGAAGAGACTCCGCAGAATATGCAAGGCTAAGCAATATGGTGTTGAAGGTCAACAAGGTCTTGGCTTTCTGTGGTCCTTTGCTTACTGGGTCTGCTGCAATTGGGTCAGGTCTTATTGGGTTGCCTGGTTTTGGGTCATGGGGTGCTGTTTTGGGTGTGGTTTTGGGGGCTATGGGCACTGTGGTTAACAGTTTGGAGCATGGTGGGCAAGTTGGGATGGTGTTTGAGATGTATAGGAGCTCTGCTGGGTTCTTCAAGCTCATGGAGGAGACCATTGAGTCAACTTTGAAGGAAAGAGAGGTTGGGGATAGAGAAAATGGGGAGCTCTTTGAAGTGAAAGTGGCTCTTCAGCTTGGGAGGAGTTTGTCTGAGCTCAGAGACCTTGCAAGTGCTTCATCTTTGTCTTCAAGAATTCAACAGGCCAAAGAAGAATTTGCAAGCAAGCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

337

Amino Acids

36.93

Weight (kDa)

5.49

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroplast_duf PF14476 1 - 313 4.5e-144 Petal formation-expressed
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 838
AciI CCGC 2 cut(s) 119, 573
AclWI GGATC 2 cut(s) 220, 470
AcsI RAATTY 2 cut(s) 972, 992
AcuI CTGAAG 2 cut(s) 557, 893
AfiI CCNNNNNNNGG 3 cut(s) 190, 398, 692
AgsI TTSAA 9 cut(s) 267, 277, 527, 607, 817, 850, 893, 969, 977
AjnI CCWGG 1 cut(s) 685
AjuI GAANNNNNNNTTGG 4 cut(s) 530, 562, 846, 878
Alw21I GWGCWC 3 cut(s) 803, 888, 936
Alw26I GTCTC 6 cut(s) 139, 165, 185, 561, 824, 933
AlwI GGATC 2 cut(s) 220, 470
AoxI GGCC 2 cut(s) 449, 981
ApeKI GCWGC 2 cut(s) 107, 656
ApoI RAATTY 2 cut(s) 972, 992
Asp700I GAANNNNTTC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 146, 635
AsuNHI GCTAGC 1 cut(s) 241
AvaII GGWCC 2 cut(s) 146, 635
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 740
BanII GRGCYC 3 cut(s) 803, 888, 936
BbsI GAAGAC 1 cut(s) 957
Bbv12I GWGCWC 3 cut(s) 803, 888, 936
BbvI GCAGC 2 cut(s) 94, 643
BccI CCATC 1 cut(s) 772
BciT130I CCWGG 1 cut(s) 687
BcoDI GTCTC 6 cut(s) 139, 165, 185, 561, 824, 933
BfaI CTAG 2 cut(s) 212, 242
BglII AGATCT 1 cut(s) 168
BisI GCNGC 2 cut(s) 108, 657
BlpI GCTNAGC 1 cut(s) 590
BlsI GCNGC 2 cut(s) 109, 658
Bme1390I CCNGG 1 cut(s) 687
Bme18I GGWCC 2 cut(s) 146, 635
BmgT120I GGNCC 2 cut(s) 146, 635
BmiI GGNNCC 2 cut(s) 403, 435
BmrFI CCNGG 1 cut(s) 687
BmrI ACTGGG 3 cut(s) 210, 317, 657
BmsI GCATC 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 245
BmuI ACTGGG 3 cut(s) 210, 317, 657
BpiI GAAGAC 1 cut(s) 957
Bpu1102I GCTNAGC 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 149
BsaI GGTCTC 2 cut(s) 824, 933
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 398, 692
Bse1I ACTGG 4 cut(s) 65, 205, 323, 652
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 687
BseGI GGATG 1 cut(s) 783
BseLI CCNNNNNNNGG 3 cut(s) 190, 398, 692
BseMII CTCAG 3 cut(s) 444, 921, 949
BseNI ACTGG 4 cut(s) 65, 205, 323, 652
BseRI GAGGAG 2 cut(s) 842, 934
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 2 cut(s) 94, 643
BseYI CCCAGC 1 cut(s) 806
BshFI GGCC 2 cut(s) 451, 983
BsiHKAI GWGCWC 3 cut(s) 803, 888, 936
BslFI GGGAC 2 cut(s) 68, 135
BslI CCNNNNNNNGG 3 cut(s) 190, 398, 692
BsmAI GTCTC 6 cut(s) 139, 165, 185, 561, 824, 933
BsmFI GGGAC 2 cut(s) 68, 135
BsnI GGCC 2 cut(s) 451, 983
Bso31I GGTCTC 2 cut(s) 824, 933
Bsp1286I GDGCHC 4 cut(s) 740, 803, 888, 936
Bsp143I GATC 3 cut(s) 168, 225, 475
Bsp1720I GCTNAGC 1 cut(s) 590
BspACI CCGC 2 cut(s) 119, 573
BspANI GGCC 2 cut(s) 451, 983
BspCNI CTCAG 3 cut(s) 445, 922, 948
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 403, 435
BspOI GCTAGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 220, 470
BspQI GCTCTTC 1 cut(s) 912
BspTNI GGTCTC 2 cut(s) 824, 933
BsrI ACTGG 4 cut(s) 65, 205, 323, 652
BssMI GATC 3 cut(s) 168, 225, 475
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 3 cut(s) 150, 742, 752
Bst6I CTCTTC 3 cut(s) 522, 559, 912
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 4 cut(s) 243, 438, 1000, 1004
BstDEI CTNAG 4 cut(s) 453, 590, 930, 935
BstF5I GGATG 1 cut(s) 783
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 3 cut(s) 171, 228, 478
BstMAI GTCTC 6 cut(s) 139, 165, 185, 561, 824, 933
BstMBI GATC 3 cut(s) 168, 225, 475
BstMWI GCNNNNNNNGC 5 cut(s) 107, 116, 125, 581, 766
BstNI CCWGG 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 685
BstSLI GKGCMC 1 cut(s) 740
BstV1I GCAGC 2 cut(s) 94, 643
BstV2I GAAGAC 1 cut(s) 957
BstX2I RGATCY 2 cut(s) 168, 225
BstXI CCANNNNNNTGG 1 cut(s) 444
BstYI RGATCY 2 cut(s) 168, 225
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 2 cut(s) 451, 983
BtsCI GGATG 1 cut(s) 783
BtsIMutI CAGTG 1 cut(s) 738
Cac8I GCNNGC 4 cut(s) 243, 438, 1000, 1004
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 146, 635
CviAII CATG 9 cut(s) 115, 190, 287, 406, 473, 484, 699, 761, 823
DdeI CTNAG 4 cut(s) 453, 590, 930, 935
DpnI GATC 3 cut(s) 170, 227, 477
DpnII GATC 3 cut(s) 168, 225, 475
DrdI GACNNNNNNGTC 1 cut(s) 838
DseDI GACNNNNNNGTC 1 cut(s) 838
Eam1104I CTCTTC 3 cut(s) 522, 559, 912
EarI CTCTTC 3 cut(s) 522, 559, 912
Ecl136II GAGCTC 3 cut(s) 801, 886, 934
Eco24I GRGCYC 3 cut(s) 803, 888, 936
Eco31I GGTCTC 2 cut(s) 824, 933
Eco47I GGWCC 2 cut(s) 146, 635
Eco53kI GAGCTC 3 cut(s) 801, 886, 934
Eco57I CTGAAG 2 cut(s) 557, 893
Eco81I CCTNAGG 1 cut(s) 453
EcoICRI GAGCTC 3 cut(s) 801, 886, 934
EcoRI GAATTC 1 cut(s) 972
EcoRII CCWGG 1 cut(s) 685
EcoT38I GRGCYC 3 cut(s) 803, 888, 936
FaeI CATG 9 cut(s) 118, 193, 290, 409, 476, 487, 702, 764, 826
FalI AAGNNNNNCTT 4 cut(s) 247, 279, 891, 923
FaqI GGGAC 2 cut(s) 68, 135
FatI CATG 9 cut(s) 114, 189, 286, 405, 472, 483, 698, 760, 822
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 108, 657
FokI GGATG 1 cut(s) 790
FriOI GRGCYC 3 cut(s) 803, 888, 936
Fsp4HI GCNGC 2 cut(s) 108, 657
FspBI CTAG 2 cut(s) 212, 242
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 108, 657
GsaI CCCAGC 1 cut(s) 810
HaeIII GGCC 2 cut(s) 451, 983
HhaI GCGC 1 cut(s) 49
Hin1II CATG 9 cut(s) 118, 193, 290, 409, 476, 487, 702, 764, 826
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 3 cut(s) 613, 748, 843
HindII GTYRAC 3 cut(s) 613, 748, 843
HindIII AAGCTT 2 cut(s) 281, 1004
HinfI GANTC 3 cut(s) 520, 569, 839
HpaI GTTAAC 1 cut(s) 748
Hpy166II GTNNAC 3 cut(s) 613, 748, 843
Hpy188I TCNGA 2 cut(s) 931, 938
Hpy188III TCNNGA 6 cut(s) 138, 166, 277, 287, 524, 969
Hpy8I GTNNAC 3 cut(s) 613, 748, 843
HpyAV CCTTC 5 cut(s) 243, 532, 553, 601, 844
HpyCH4III ACNGT 3 cut(s) 150, 742, 752
HpyCH4V TGCA 7 cut(s) 31, 110, 128, 584, 659, 947, 998
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 116, 125, 581, 766
HpyF3I CTNAG 4 cut(s) 453, 590, 930, 935
Hsp92II CATG 9 cut(s) 118, 193, 290, 409, 476, 487, 702, 764, 826
HspAI GCGC 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 748
Kzo9I GATC 3 cut(s) 168, 225, 475
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 4 cut(s) 433, 757, 798, 883
Lsp1109I GCAGC 2 cut(s) 94, 643
LweI GCATC 1 cut(s) 137
MaeI CTAG 2 cut(s) 212, 242
MaeIII GTNAC 4 cut(s) 196, 325, 346, 488
MalI GATC 3 cut(s) 170, 227, 477
MboI GATC 3 cut(s) 168, 225, 475
MboII GAAGA 8 cut(s) 302, 470, 539, 576, 805, 899, 957, 1001
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 2 cut(s) 168, 225
MhlI GDGCHC 4 cut(s) 740, 803, 888, 936
MluCI AATT 5 cut(s) 6, 426, 660, 972, 992
MlyI GAGTC 2 cut(s) 563, 848
MmeI TCCRAC 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 262
MseI TTAA 1 cut(s) 747
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 2 cut(s) 107, 440
MspR9I CCNGG 1 cut(s) 687
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 5 cut(s) 107, 116, 125, 581, 766
NdeII GATC 3 cut(s) 168, 225, 475
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 9 cut(s) 118, 193, 290, 409, 476, 487, 702, 764, 826
NlaIV GGNNCC 2 cut(s) 403, 435
NmuCI GTSAC 3 cut(s) 196, 346, 488
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 912
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 2 cut(s) 109, 658
PleI GAGTC 2 cut(s) 563, 847
PpsI GAGTC 2 cut(s) 563, 847
Psp124BI GAGCTC 3 cut(s) 803, 888, 936
Psp6I CCWGG 1 cut(s) 685
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 2 cut(s) 403, 435
PspPI GGNCC 2 cut(s) 146, 635
PsuI RGATCY 2 cut(s) 168, 225
PvuII CAGCTG 2 cut(s) 107, 440
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 3 cut(s) 803, 888, 936
SapI GCTCTTC 1 cut(s) 912
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 2 cut(s) 108, 657
Sau3AI GATC 3 cut(s) 168, 225, 475
Sau96I GGNCC 2 cut(s) 146, 635
SchI GAGTC 2 cut(s) 563, 848
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 4 cut(s) 740, 803, 888, 936
SfaNI GCATC 1 cut(s) 137
SinI GGWCC 2 cut(s) 146, 635
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 5 cut(s) 6, 426, 660, 972, 992
SsiI CCGC 2 cut(s) 119, 573
SspMI CTAG 2 cut(s) 212, 242
SstI GAGCTC 3 cut(s) 803, 888, 936
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 3 cut(s) 150, 742, 752
TasI AATT 5 cut(s) 6, 426, 660, 972, 992
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TscAI CASTG 1 cut(s) 745
TseFI GTSAC 3 cut(s) 196, 346, 488
TseI GCWGC 2 cut(s) 107, 656
Tsp45I GTSAC 3 cut(s) 196, 346, 488
TspDTI ATGAA 5 cut(s) 233, 275, 303, 572, 945
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 2 cut(s) 146, 635
XapI RAATTY 2 cut(s) 972, 992
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 2 cut(s) 212, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.