Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007495

Physical Location & Seq

Genomic Coordinates Forward (+)

13612772 .. 13614595

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G217100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCTACTCTTCAAGCTTCATTTTGCTCTTCTTCTTTTTCTTCAGCTACATTTAAAAAAACCAAAACCACTCTCCACAACCCAAAATTCCAAAAATCATCCCATCTTTCAGTTCCTAGGCTCCTTGTGGATGAACTGAGTCAACCCAATGGGTTACTAAATCTAACAGCAACTTCAACTCATATAGAAATGAACCCAAATTTTAAAAACACTAGGAGATCAAAGGGTAGTGAAGCAATTTCAGATTCAAAGTTGGTGCAAGAGCTATATGCAATAATGGAAATTGTCTCTGACAGAGTAGAAATGCACAAGAACATTTGTGCCCAGAGGGACAATTGGAATGGCCTGCTTCTCAACTCTCTGAATGGAATGACAGCCACTGCTGCAATCATGGCTGGACTTGCAGCTGTGAGTGGATCTGGAGGAGCACCCATTTTGGCTCTCAAGCTGTCTTCCAGTCTCCTATACATGGCTGTCACTGGGATTTTGCTGGTGATGAATAAGATCCAGCCTTCTCAGCTAGCAGAGGAGCAGAGAAATGCTTCAAGGCTTTTTAAGAGGCTTCATGAAGAGATCAAAACCACTCTGGCTTTAAAAACCCCAACTTCAAATGATGTGAAGGTTGCAATGGAAAAGGTTTTGGCTTTAGATAAGGCCTACCCACTGCCCTTGCTTGGGACCATGATTGAGAAATTTCCTTCCCTTGTGAAGCCTGCTGTGTGGTGGCCAGAAGAATCCAAGCCTCAACATGAAGAGACGAGTGAGACGGTTGAGAGGAATGGGTGGGATGAGAAGCTGGAAGAGGAAATGAAGGAGATTTTGGGTGTGGTGAGAGGAAAAGATGCTGCAGAATATGTGAGGCTAAGCAATGTGGTGTTGAAGGTTAACAAAATACTAGCATTCTGTGGCCCTTTGCTCACTGGTTTTGCTGCAGCTGGGGCAGGGCTTGTTGGGTTGACTGGTTTTGGTTCATGGGGTGCAGTTTTGGCTGTGGTGTTTGGGGCTTTGGCCAGCGTGGTCAATACTTTGGAGCATGGTGGGCAAGTGGGAATGGTGTTTGAGATGTATAGGAGTTCTGCAGGGTTTTTTAAGCTCATGGAGGAGACCATAGAATCAACTCTCAAGGAAGGAGAGGTTGGAGAGAGAGAGAATGGGGAGCTGTTTGAAGTGAAAGTGGCTCTTCAGCTTGGCAGGAGCCTTGCAGAACTCAGAGACCTTGCAAGTTCTTCATCTTTGTCTTCAAGATTTAAACAGGCTAAAGAAGAATTTGCAAGCAAGCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroplast_duf

Protein Analysis

429

Amino Acids

46.63

Weight (kDa)

7.07

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007495)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23080
malus_domestica	MD11G1214100.v1.1
prunus_persica	Prupe.4G217100_v2.0.a1
pyrus_communis	pycom11g18860
rosa_chinensis	RchiOBHm_Chr5g0040591 RchiOBHm_Chr5g0040661
rosa_laevigata	RLG00000033990 RLG00000033992
rosa_multiflora	Rmu_co8282641.1_g000001 Rmu_co8333007.1_g000001 Rmu_sc0003916.1_g000011 Rmu_sc0026887.1_g000001
rosa_roxburghii	Rroxscaffold_1G00040020 Rroxscaffold_1G00040050 Rroxscaffold_1G00040080 Rroxscaffold_1G00040790
rosa_rugosa	Rorug05G0185900 Rorug05G0186100
rosa_samantha	Rh5BG276900 Rh5BG277500 Rh5CG308400 Rh5CG308600 Rh5DG285500
rosa_wichuraiana	Rw5G025530 Rw5G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	424, 499
AcoI	YGGCCR	2 cut(s)	725, 1008
AcsI	RAATTY	4 cut(s)	86, 199, 692, 1265
AcuI	CTGAAG	2 cut(s)	27, 1166
AfiI	CCNNNNNNNGG	3 cut(s)	469, 674, 675
AgsI	TTSAA	8 cut(s)	14, 177, 249, 546, 609, 880, 1166, 1242
AjuI	GAANNNNNNNTTGG	4 cut(s)	803, 835, 1119, 1151
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	6 cut(s)	292, 464, 749, 758, 1097, 1206
AlwI	GGATC	2 cut(s)	424, 499
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	5 cut(s)	343, 654, 725, 907, 1008
ApeKI	GCWGC	5 cut(s)	383, 404, 845, 929, 932
ApoI	RAATTY	4 cut(s)	86, 199, 692, 1265
Asp700I	GAANNNNTTC	1 cut(s)	541
AspA2I	CCTAGG	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	678, 908
AsuHPI	GGTGA	2 cut(s)	505, 841
AsuNHI	GCTAGC	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	678
AvrII	CCTAGG	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	325
BalI	TGGCCA	2 cut(s)	727, 1010
BbsI	GAAGAC	2 cut(s)	444, 1230
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	5 cut(s)	370, 416, 832, 916, 944
BccI	CCATC	1 cut(s)	111
BcoDI	GTCTC	6 cut(s)	292, 464, 749, 758, 1097, 1206
BfaI	CTAG	4 cut(s)	117, 213, 521, 896
BfmI	CTRYAG	3 cut(s)	846, 930, 1077
BisI	GCNGC	5 cut(s)	384, 405, 846, 930, 933
BlnI	CCTAGG	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	863
BlsI	GCNGC	5 cut(s)	385, 406, 847, 931, 934
Bme18I	GGWCC	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	678, 908
BmiI	GGNNCC	3 cut(s)	122, 679, 1196
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	832
BmtI	GCTAGC	1 cut(s)	524
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	2 cut(s)	444, 1230
BpmI	CTGGAG	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	863
BpuEI	CTTGAG	2 cut(s)	428, 1106
BsaI	GGTCTC	2 cut(s)	1097, 1206
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 674, 675
Bse1I	ACTGG	4 cut(s)	456, 484, 925, 964
Bse3DI	GCAATG	2 cut(s)	633, 874
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	3 cut(s)	98, 136, 793
BseLI	CCNNNNNNNGG	3 cut(s)	469, 674, 675
BseMI	GCAATG	2 cut(s)	633, 874
BseMII	CTCAG	3 cut(s)	128, 530, 1222
BseNI	ACTGG	4 cut(s)	456, 484, 925, 964
BseRI	GAGGAG	3 cut(s)	438, 542, 1115
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	5 cut(s)	370, 416, 832, 916, 944
BseYI	CCCAGC	1 cut(s)	935
BsgI	GTGCAG	1 cut(s)	999
BshFI	GGCC	5 cut(s)	345, 656, 727, 909, 1010
BsiHKAI	GWGCWC	1 cut(s)	430
BslFI	GGGAC	2 cut(s)	344, 691
BslI	CCNNNNNNNGG	3 cut(s)	469, 674, 675
BsmAI	GTCTC	6 cut(s)	292, 464, 749, 758, 1097, 1206
BsmBI	CGTCTC	2 cut(s)	749, 758
BsmFI	GGGAC	2 cut(s)	344, 691
BsmI	GAATGC	1 cut(s)	899
BsnI	GGCC	5 cut(s)	345, 656, 727, 909, 1010
Bso31I	GGTCTC	2 cut(s)	1097, 1206
Bsp1286I	GDGCHC	2 cut(s)	325, 430
Bsp143I	GATC	4 cut(s)	218, 416, 504, 573
Bsp1720I	GCTNAGC	1 cut(s)	863
BspANI	GGCC	5 cut(s)	345, 656, 727, 909, 1010
BspCNI	CTCAG	3 cut(s)	129, 529, 1221
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	3 cut(s)	122, 679, 1196
BspMAI	CTGCAG	3 cut(s)	850, 934, 1081
BspOI	GCTAGC	1 cut(s)	524
BspPI	GGATC	2 cut(s)	424, 499
BspQI	GCTCTTC	2 cut(s)	34, 1185
BspTNI	GGTCTC	2 cut(s)	1097, 1206
BsrDI	GCAATG	2 cut(s)	633, 874
BsrI	ACTGG	4 cut(s)	456, 484, 925, 964
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	4 cut(s)	218, 416, 504, 573
BssT1I	CCWWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	769
Bst6I	CTCTTC	6 cut(s)	15, 34, 564, 747, 795, 1185
BstC8I	GCNNGC	6 cut(s)	347, 522, 714, 1012, 1273, 1277
BstDEI	CTNAG	4 cut(s)	137, 516, 863, 1208
BstF5I	GGATG	3 cut(s)	98, 136, 793
BstKTI	GATC	4 cut(s)	221, 419, 507, 576
BstMAI	GTCTC	6 cut(s)	292, 464, 749, 758, 1097, 1206
BstMBI	GATC	4 cut(s)	218, 416, 504, 573
BstMWI	GCNNNNNNNGC	7 cut(s)	383, 392, 401, 517, 938, 986, 1039
BstSFI	CTRYAG	3 cut(s)	846, 930, 1077
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	5 cut(s)	370, 416, 832, 916, 944
BstV2I	GAAGAC	2 cut(s)	444, 1230
BstX2I	RGATCY	2 cut(s)	416, 504
BstYI	RGATCY	2 cut(s)	416, 504
BsuRI	GGCC	5 cut(s)	345, 656, 727, 909, 1010
BtsCI	GGATG	3 cut(s)	98, 136, 793
BtsI	GCAGTG	2 cut(s)	378, 662
BtsIMutI	CAGTG	4 cut(s)	378, 477, 662, 918
Cac8I	GCNNGC	6 cut(s)	347, 522, 714, 1012, 1273, 1277
CaiI	CAGNNNCTG	1 cut(s)	380
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	678, 908
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	8 cut(s)	391, 469, 566, 682, 749, 972, 1034, 1096
DdeI	CTNAG	4 cut(s)	137, 516, 863, 1208
DpnI	GATC	4 cut(s)	220, 418, 506, 575
DpnII	GATC	4 cut(s)	218, 416, 504, 573
DraI	TTTAAA	4 cut(s)	55, 205, 594, 1249
EaeI	YGGCCR	2 cut(s)	725, 1008
Eam1104I	CTCTTC	6 cut(s)	15, 34, 564, 747, 795, 1185
EarI	CTCTTC	6 cut(s)	15, 34, 564, 747, 795, 1185
Eco130I	CCWWGG	1 cut(s)	116
Eco147I	AGGCCT	1 cut(s)	656
Eco31I	GGTCTC	2 cut(s)	1097, 1206
Eco47I	GGWCC	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	27, 1166
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
Esp3I	CGTCTC	2 cut(s)	749, 758
FaeI	CATG	8 cut(s)	394, 472, 569, 685, 752, 975, 1037, 1099
FalI	AAGNNNNNCTT	2 cut(s)	1164, 1196
FaqI	GGGAC	2 cut(s)	344, 691
FatI	CATG	8 cut(s)	390, 468, 565, 681, 748, 971, 1033, 1095
Fnu4HI	GCNGC	5 cut(s)	384, 405, 846, 930, 933
FokI	GGATG	3 cut(s)	85, 143, 800
Fsp4HI	GCNGC	5 cut(s)	384, 405, 846, 930, 933
FspBI	CTAG	4 cut(s)	117, 213, 521, 896
GluI	GCNGC	5 cut(s)	384, 405, 846, 930, 933
GsaI	CCCAGC	1 cut(s)	939
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	5 cut(s)	345, 656, 727, 909, 1010
Hin1II	CATG	8 cut(s)	394, 472, 569, 685, 752, 975, 1037, 1099
HincII	GTYRAC	3 cut(s)	143, 886, 957
HindII	GTYRAC	3 cut(s)	143, 886, 957
HindIII	AAGCTT	2 cut(s)	15, 1277
HinfI	GANTC	4 cut(s)	139, 245, 734, 1112
HpaI	GTTAAC	1 cut(s)	886
HphI	GGTGA	2 cut(s)	505, 841
Hpy166II	GTNNAC	3 cut(s)	143, 886, 957
Hpy188I	TCNGA	4 cut(s)	244, 292, 363, 1211
Hpy188III	TCNNGA	3 cut(s)	420, 566, 1242
Hpy8I	GTNNAC	3 cut(s)	143, 886, 957
HpyAV	CCTTC	6 cut(s)	522, 613, 708, 805, 874, 1121
HpyCH4III	ACNGT	1 cut(s)	769
HpyF10VI	GCNNNNNNNGC	7 cut(s)	383, 392, 401, 517, 938, 986, 1039
HpyF3I	CTNAG	4 cut(s)	137, 516, 863, 1208
Hsp92II	CATG	8 cut(s)	394, 472, 569, 685, 752, 975, 1037, 1099
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	4 cut(s)	218, 416, 504, 573
LguI	GCTCTTC	2 cut(s)	34, 1185
LmnI	GCTCC	6 cut(s)	126, 425, 529, 1030, 1156, 1194
Lsp1109I	GCAGC	5 cut(s)	370, 416, 832, 916, 944
LweI	GCATC	1 cut(s)	832
MaeI	CTAG	4 cut(s)	117, 213, 521, 896
MaeIII	GTNAC	2 cut(s)	153, 475
MalI	GATC	4 cut(s)	220, 418, 506, 575
MboI	GATC	4 cut(s)	218, 416, 504, 573
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	2 cut(s)	416, 504
MhlI	GDGCHC	2 cut(s)	325, 430
MlsI	TGGCCA	2 cut(s)	727, 1010
MluCI	AATT	7 cut(s)	86, 199, 237, 282, 334, 692, 1265
MluNI	TGGCCA	2 cut(s)	727, 1010
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	1117
Mox20I	TGGCCA	2 cut(s)	727, 1010
MroXI	GAANNNNTTC	1 cut(s)	541
MscI	TGGCCA	2 cut(s)	727, 1010
MseI	TTAA	7 cut(s)	54, 204, 555, 593, 885, 1089, 1248
Msp20I	TGGCCA	2 cut(s)	727, 1010
MspA1I	CMGCKG	2 cut(s)	407, 935
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	899
MwoI	GCNNNNNNNGC	7 cut(s)	383, 392, 401, 517, 938, 986, 1039
NdeII	GATC	4 cut(s)	218, 416, 504, 573
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	8 cut(s)	394, 472, 569, 685, 752, 975, 1037, 1099
NlaIV	GGNNCC	3 cut(s)	122, 679, 1196
NmuCI	GTSAC	1 cut(s)	475
PagI	TCATGA	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	656
PciSI	GCTCTTC	2 cut(s)	34, 1185
PctI	GAATGC	1 cut(s)	899
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	245, 734, 1112
PkrI	GCNGC	5 cut(s)	385, 406, 847, 931, 934
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	935
PspN4I	GGNNCC	3 cut(s)	122, 679, 1196
PspPI	GGNCC	2 cut(s)	678, 908
PstI	CTGCAG	3 cut(s)	850, 934, 1081
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	416, 504
PvuII	CAGCTG	2 cut(s)	407, 935
SapI	GCTCTTC	2 cut(s)	34, 1185
SaqAI	TTAA	7 cut(s)	54, 204, 555, 593, 885, 1089, 1248
SatI	GCNGC	5 cut(s)	384, 405, 846, 930, 933
Sau3AI	GATC	4 cut(s)	218, 416, 504, 573
Sau96I	GGNCC	2 cut(s)	678, 908
SchI	GAGTC	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	325, 430
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	3 cut(s)	846, 930, 1077
SinI	GGWCC	1 cut(s)	678
SmlI	CTYRAG	2 cut(s)	443, 1121
SmoI	CTYRAG	2 cut(s)	443, 1121
Sse9I	AATT	7 cut(s)	86, 199, 237, 282, 334, 692, 1265
SseBI	AGGCCT	1 cut(s)	656
SspMI	CTAG	4 cut(s)	117, 213, 521, 896
StuI	AGGCCT	1 cut(s)	656
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	769
TasI	AATT	7 cut(s)	86, 199, 237, 282, 334, 692, 1265
TfiI	GAWTC	3 cut(s)	245, 734, 1112
Tru1I	TTAA	7 cut(s)	54, 204, 555, 593, 885, 1089, 1248
Tru9I	TTAA	7 cut(s)	54, 204, 555, 593, 885, 1089, 1248
TscAI	CASTG	4 cut(s)	385, 484, 669, 925
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	5 cut(s)	383, 404, 845, 929, 932
Tsp45I	GTSAC	1 cut(s)	475
TspRI	CASTG	4 cut(s)	385, 484, 669, 925
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	4 cut(s)	86, 199, 692, 1265
XmaJI	CCTAGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	4 cut(s)	117, 213, 521, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.