FvH4_3g23150
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
16227991 .. 16231047
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23150.t1

Sequence Viewer

Length: 1644 bp
ATGGACCTTGCTGCTAGTGATCATTCGATCCATAACTCCAGAATTGAGCATGTGTTCTCTCCGGCGACCGCGGACGGGAAGCGGGTGGTTCATGATGAACTGGACTTCTTTGCTGATCATCACAAGGGTAGTCTGAAAGAAACAGATCAAACCCTTGAAGATAAAGAAGACATGGCTCAAGAAAAGCAACTAGATACTGGTTTAAATCTTCTTACAACATATACCAGTACCAGCGATAAATCATCTACGGATGATGGATCAACATCTCATAGTATGGAAGATCACAAACAAACAATAAATGAGCTAGAAGTTGTTCAAGCTGAATTGGGGCGTATGAACGTAGATAATCAACGGCTGAGAGTTATGATTACTCAGGTTAACAACAATTACAAGAGCTTACAGGTGCATCTCCTAGAATTCATGCAACGCCAGCAAAATCAACCAGTAAAACAACACAAGATGGTCATAAATGGAACAGCACCAGAAGAGAAGCAGATAATGAACAATATTGTTCCTAGACAATTTATGGATATGGGCAGGGCTGGAAATATCACTCATCATGAGAAAAATGAGCTTGTTTCACACTCTTCATTGGATATGGCTAGATTATCCAATAACGATTGTTCTGGTTCGCCTCCCATTGTTGAGTCAATGGATCACTTCAAGAGCCCAGTTCAAAGGGGCAGTAAAAGAAAGTCTGGGGGTGCTGAAGATAGCTCATCAGAAGGACAAGAATTTCCAGCTGGGAGTCCTGGTTGGGTTCCTAAGAAAATTCCCAAGTTGAGTTCTGGGGACGTCGACGTAGATCATCAGGCTGCAGCTTCTGAAGAAACCGTGTCCATGATTAAGAAAGCTCGTGTTTCTGTTCGAGCACGATCTGAATCTTCCATGATATCTGATGGATGCCAATGGAGAAAGTATGGTCAGAAGATGGCTAAAGGGAACCCTTGCCCTAGGGCTTATTATCGTTGCACCATGGGAACTGGTTGCCCAGTTCGAAAACAGGTACAAAGATGTGCAGAAGACAAAACCATACTCACAACAACTTATGAAGGGCATCACAACCACCCACTCCCACCTGCTGCTATGACCATGGTATCTACTACATCAGCAGCAGCATCAATGATACTCTCCGGTTCAATGCCCAGTGCTGATCAACATCCTCACCATGCCATAATAAACTCATCATCAAACAATTTTTTACAAGGAACAGCTCTTCATCATCCACAACTGCCAAATTGCCCACCAAGCTTTGCAACTCTTTCAGCTTCAGCCCCGTTTCCCACAGTTACATTGGACCTCACTCGCGCTCCAACTACTGCATCAGAGACTATGGCACTGAACCAATTACCAAATTTTTCTCAAAACTTGCCTTTGCCACATGTTTTAGGCCAAGCCCTATGCAACAGCGAATCAAAACTTACCCTTCTCGATGGTTTACGAGGACTGGACACTACTACAAATCACTCGATCCTAGCTGACAAAGTAAGTGCAGCTACGGCCGCCATCACAGCTGATCCAAATTTCGCAGCAGTTCTAGTGGCAGCCATTACCTCTATCATGGGGAATAATGTTCATTCAAACAATAATACCAACACTTCCAACAATATTACTACAAGAAACAGTAGTGATGACAATACATAA

Protein Analysis

548

Amino Acids

59.56

Weight (kDa)

6.22

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 300 - 357 4.7e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013643)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1087
AatII GACGTC 1 cut(s) 798
Acc36I ACCTGC 1 cut(s) 1087
AccI GTMKAC 1 cut(s) 798
AccII CGCG 2 cut(s) 71, 1308
AciI CCGC 4 cut(s) 69, 71, 82, 1503
AclWI GGATC 5 cut(s) 22, 265, 663, 1465, 1511
AcoI YGGCCR 1 cut(s) 1500
AcsI RAATTY 5 cut(s) 416, 734, 771, 1354, 1522
AcuI CTGAAG 3 cut(s) 729, 846, 1254
AcyI GRCGYC 1 cut(s) 795
AfaI GTAC 2 cut(s) 229, 1008
AfiI CCNNNNNNNGG 1 cut(s) 75
AflIII ACRYGT 1 cut(s) 1381
AgsI TTSAA 6 cut(s) 158, 317, 664, 677, 1140, 1581
AjnI CCWGG 1 cut(s) 751
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 1 cut(s) 1322
AlwI GGATC 5 cut(s) 22, 265, 663, 1465, 1511
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 2 cut(s) 1390, 1500
ApeKI GCWGC 9 cut(s) 11, 815, 818, 1082, 1112, 1115, 1493, 1529, 1544
ApoI RAATTY 5 cut(s) 416, 734, 771, 1354, 1522
Asp700I GAANNNNTTC 1 cut(s) 312
AspA2I CCTAGG 1 cut(s) 953
AspLEI GCGC 1 cut(s) 1310
AspS9I GGNCC 2 cut(s) 4, 1297
AsuHPI GGTGA 1 cut(s) 1157
AsuII TTCGAA 1 cut(s) 997
AvaII GGWCC 2 cut(s) 4, 1297
AvrII CCTAGG 1 cut(s) 953
BaeI ACNNNNGTAYC 2 cut(s) 1080, 1113
BanII GRGCYC 1 cut(s) 671
BauI CACGAG 1 cut(s) 855
BbsI GAAGAC 2 cut(s) 174, 1029
Bbv12I GWGCWC 1 cut(s) 874
BbvI GCAGC 8 cut(s) 802, 830, 1069, 1124, 1127, 1505, 1541, 1556
BccI CCATC 6 cut(s) 248, 454, 893, 925, 1427, 1514
BceAI ACGGC 2 cut(s) 368, 1515
BciT130I CCWGG 1 cut(s) 753
BclI TGATCA 3 cut(s) 19, 115, 1153
BcoDI GTCTC 1 cut(s) 1322
BfaI CTAG 9 cut(s) 15, 191, 305, 413, 516, 603, 954, 1475, 1538
BfmI CTRYAG 1 cut(s) 816
BfuAI ACCTGC 1 cut(s) 1087
BlnI CCTAGG 1 cut(s) 953
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 2 cut(s) 4, 1297
BmgT120I GGNCC 2 cut(s) 4, 1297
BmiI GGNNCC 2 cut(s) 762, 944
BmrFI CCNGG 1 cut(s) 753
BmrI ACTGGG 3 cut(s) 665, 986, 1140
BmsI GCATC 5 cut(s) 415, 893, 1066, 1127, 1331
BmuI ACTGGG 3 cut(s) 665, 986, 1140
BpiI GAAGAC 2 cut(s) 174, 1029
BpmI CTGGAG 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 997
BpuEI CTTGAG 1 cut(s) 162
BsaBI GATNNNNATC 3 cut(s) 262, 880, 1158
BsaHI GRCGYC 1 cut(s) 795
BsaJI CCNNGG 4 cut(s) 69, 953, 975, 1092
BsaWI WCCGGW 1 cut(s) 1133
BsaXI ACNNNNNCTCC 4 cut(s) 739, 769, 1294, 1324
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 9 cut(s) 105, 202, 225, 443, 671, 988, 992, 1146, 1452
Bse8I GATNNNNATC 3 cut(s) 262, 880, 1158
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 4 cut(s) 69, 953, 975, 1092
BseGI GGATG 4 cut(s) 256, 908, 1159, 1222
BseJI GATNNNNATC 3 cut(s) 262, 880, 1158
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 347, 386
BseNI ACTGG 9 cut(s) 105, 202, 225, 443, 671, 988, 992, 1146, 1452
BseX3I CGGCCG 1 cut(s) 1500
BseXI GCAGC 8 cut(s) 802, 830, 1069, 1124, 1127, 1505, 1541, 1556
BseYI CCCAGC 1 cut(s) 743
BsgI GTGCAG 2 cut(s) 1038, 1512
Bsh1236I CGCG 2 cut(s) 71, 1308
Bsh1285I CGRYCG 2 cut(s) 69, 1503
BshFI GGCC 2 cut(s) 1392, 1502
BsiEI CGRYCG 2 cut(s) 69, 1503
BsiHKAI GWGCWC 1 cut(s) 874
BsiSI CCGG 2 cut(s) 62, 1134
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 1322
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 2 cut(s) 1392, 1502
Bsp119I TTCGAA 1 cut(s) 997
Bsp1286I GDGCHC 2 cut(s) 671, 874
Bsp19I CCATGG 2 cut(s) 975, 1092
BspACI CCGC 4 cut(s) 69, 71, 82, 1503
BspANI GGCC 2 cut(s) 1392, 1502
BspCNI CTCAG 2 cut(s) 348, 385
BspFNI CGCG 2 cut(s) 71, 1308
BspHI TCATGA 2 cut(s) 91, 559
BspLI GGNNCC 2 cut(s) 762, 944
BspMAI CTGCAG 1 cut(s) 820
BspMI ACCTGC 1 cut(s) 1087
BspPI GGATC 5 cut(s) 22, 265, 663, 1465, 1511
BspQI GCTCTTC 1 cut(s) 1221
BspT104I TTCGAA 1 cut(s) 997
BsrI ACTGG 9 cut(s) 105, 202, 225, 443, 671, 988, 992, 1146, 1452
BssECI CCNNGG 4 cut(s) 69, 953, 975, 1092
BssNI GRCGYC 1 cut(s) 795
BssSI CACGAG 1 cut(s) 855
BssT1I CCWWGG 3 cut(s) 953, 975, 1092
Bst2BI CACGAG 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 3 cut(s) 835, 1288, 1625
Bst6I CTCTTC 3 cut(s) 480, 592, 1221
BstACI GRCGYC 1 cut(s) 795
BstBI TTCGAA 1 cut(s) 997
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 3 cut(s) 356, 372, 765
BstDSI CCRYGG 3 cut(s) 69, 975, 1092
BstF5I GGATG 4 cut(s) 256, 908, 1159, 1222
BstFNI CGCG 2 cut(s) 71, 1308
BstHHI GCGC 1 cut(s) 1310
BstMAI GTCTC 1 cut(s) 1322
BstMCI CGRYCG 2 cut(s) 69, 1503
BstMWI GCNNNNNNNGC 5 cut(s) 430, 1248, 1499, 1502, 1511
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 2 cut(s) 53, 1385
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 816
BstUI CGCG 2 cut(s) 71, 1308
BstV1I GCAGC 8 cut(s) 802, 830, 1069, 1124, 1127, 1505, 1541, 1556
BstV2I GAAGAC 2 cut(s) 174, 1029
BstZI CGGCCG 1 cut(s) 1500
BsuRI GGCC 2 cut(s) 1392, 1502
BtgI CCRYGG 3 cut(s) 69, 975, 1092
BtsCI GGATG 4 cut(s) 256, 908, 1159, 1222
BtsIMutI CAGTG 2 cut(s) 1153, 1337
BveI ACCTGC 1 cut(s) 1087
Cac8I GCNNGC 1 cut(s) 431
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 2 cut(s) 91, 559
CfoI GCGC 1 cut(s) 1310
Cfr13I GGNCC 2 cut(s) 4, 1297
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 2 cut(s) 228, 1007
CviQI GTAC 2 cut(s) 228, 1007
DdeI CTNAG 3 cut(s) 356, 372, 765
DraI TTTAAA 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 1500
EagI CGGCCG 1 cut(s) 1500
Eam1104I CTCTTC 3 cut(s) 480, 592, 1221
EarI CTCTTC 3 cut(s) 480, 592, 1221
EclXI CGGCCG 1 cut(s) 1500
Eco130I CCWWGG 3 cut(s) 953, 975, 1092
Eco24I GRGCYC 1 cut(s) 671
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 4, 1297
Eco52I CGGCCG 1 cut(s) 1500
Eco57I CTGAAG 3 cut(s) 729, 846, 1254
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 751
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 3 cut(s) 953, 975, 1092
EcoT38I GRGCYC 1 cut(s) 671
ErhI CCWWGG 3 cut(s) 953, 975, 1092
FaqI GGGAC 1 cut(s) 806
FauI CCCGC 1 cut(s) 75
FbaI TGATCA 3 cut(s) 19, 115, 1153
FblI GTMKAC 1 cut(s) 798
FokI GGATG 4 cut(s) 263, 915, 1146, 1209
FriOI GRGCYC 1 cut(s) 671
FspBI CTAG 9 cut(s) 15, 191, 305, 413, 516, 603, 954, 1475, 1538
GlaI GCGC 1 cut(s) 1309
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 1 cut(s) 22
HaeIII GGCC 2 cut(s) 1392, 1502
HapII CCGG 2 cut(s) 62, 1134
HhaI GCGC 1 cut(s) 1310
Hin1I GRCGYC 1 cut(s) 795
Hin6I GCGC 1 cut(s) 1308
HinP1I GCGC 1 cut(s) 1308
HincII GTYRAC 2 cut(s) 379, 799
HindII GTYRAC 2 cut(s) 379, 799
HindIII AAGCTT 1 cut(s) 1249
HinfI GANTC 4 cut(s) 647, 748, 881, 1412
HpaI GTTAAC 1 cut(s) 379
HpaII CCGG 2 cut(s) 62, 1134
HphI GGTGA 1 cut(s) 1157
Hpy166II GTNNAC 3 cut(s) 379, 799, 1439
Hpy188I TCNGA 7 cut(s) 135, 724, 826, 880, 898, 927, 1327
Hpy188III TCNNGA 6 cut(s) 39, 92, 179, 560, 664, 1430
Hpy8I GTNNAC 3 cut(s) 379, 799, 1439
Hpy99I CGWCG 2 cut(s) 800, 803
HpyAV CCTTC 3 cut(s) 719, 1046, 1436
HpyCH4III ACNGT 3 cut(s) 835, 1288, 1625
HpyCH4IV ACGT 3 cut(s) 339, 795, 801
HpyCH4V TGCA 9 cut(s) 406, 424, 818, 972, 1019, 1256, 1322, 1404, 1493
HpyF10VI GCNNNNNNNGC 5 cut(s) 430, 1248, 1499, 1502, 1511
HpyF3I CTNAG 3 cut(s) 356, 372, 765
HpySE526I ACGT 3 cut(s) 339, 795, 801
Hsp92I GRCGYC 1 cut(s) 795
HspAI GCGC 1 cut(s) 1308
Ksp22I TGATCA 3 cut(s) 19, 115, 1153
KspAI GTTAAC 1 cut(s) 379
KspI CCGCGG 1 cut(s) 72
LguI GCTCTTC 1 cut(s) 1221
LmnI GCTCC 1 cut(s) 1315
Lsp1109I GCAGC 8 cut(s) 802, 830, 1069, 1124, 1127, 1505, 1541, 1556
LweI GCATC 5 cut(s) 415, 893, 1066, 1127, 1331
MaeI CTAG 9 cut(s) 15, 191, 305, 413, 516, 603, 954, 1475, 1538
MaeII ACGT 3 cut(s) 339, 795, 801
MaeIII GTNAC 1 cut(s) 1288
MhlI GDGCHC 2 cut(s) 671, 874
MlyI GAGTC 2 cut(s) 656, 757
MmeI TCCRAC 2 cut(s) 1337, 1626
MnlI CCTC 5 cut(s) 645, 1173, 1310, 1436, 1564
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 3 cut(s) 203, 378, 846
MspA1I CMGCKG 3 cut(s) 71, 743, 1514
MspI CCGG 2 cut(s) 62, 1134
MspR9I CCNGG 1 cut(s) 753
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 2 cut(s) 71, 1308
MwoI GCNNNNNNNGC 5 cut(s) 430, 1248, 1499, 1502, 1511
NcoI CCATGG 2 cut(s) 975, 1092
NlaIV GGNNCC 2 cut(s) 762, 944
NspI RCATGY 2 cut(s) 53, 1385
NspV TTCGAA 1 cut(s) 997
PagI TCATGA 2 cut(s) 91, 559
PaqCI CACCTGC 1 cut(s) 1087
PciI ACATGT 1 cut(s) 1381
PciSI GCTCTTC 1 cut(s) 1221
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 881, 1412
PleI GAGTC 2 cut(s) 655, 756
PpsI GAGTC 2 cut(s) 655, 756
PscI ACATGT 1 cut(s) 1381
Psp6I CCWGG 1 cut(s) 751
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 762, 944
PspPI GGNCC 2 cut(s) 4, 1297
PstI CTGCAG 1 cut(s) 820
PstNI CAGNNNCTG 1 cut(s) 824
PvuII CAGCTG 2 cut(s) 743, 1514
RsaI GTAC 2 cut(s) 229, 1008
RsaNI GTAC 2 cut(s) 228, 1007
SacII CCGCGG 1 cut(s) 72
SalI GTCGAC 1 cut(s) 797
SapI GCTCTTC 1 cut(s) 1221
SaqAI TTAA 3 cut(s) 203, 378, 846
Sau96I GGNCC 2 cut(s) 4, 1297
SchI GAGTC 2 cut(s) 656, 757
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 2 cut(s) 671, 874
SfaNI GCATC 5 cut(s) 415, 893, 1066, 1127, 1331
SfcI CTRYAG 1 cut(s) 816
Sfr303I CCGCGG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 997
SgrBI CCGCGG 1 cut(s) 72
SgrDI CGTCGACG 1 cut(s) 797
SinI GGWCC 2 cut(s) 4, 1297
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
SsiI CCGC 4 cut(s) 69, 71, 82, 1503
SspI AATATT 2 cut(s) 508, 1609
SspMI CTAG 9 cut(s) 15, 191, 305, 413, 516, 603, 954, 1475, 1538
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 3 cut(s) 953, 975, 1092
TaaI ACNGT 3 cut(s) 835, 1288, 1625
TaiI ACGT 3 cut(s) 342, 798, 804
TaqI TCGA 6 cut(s) 26, 798, 868, 997, 1431, 1469
TauI GCSGC 1 cut(s) 1505
TfiI GAWTC 2 cut(s) 881, 1412
Tru1I TTAA 3 cut(s) 203, 378, 846
Tru9I TTAA 3 cut(s) 203, 378, 846
TscAI CASTG 2 cut(s) 1153, 1344
TseI GCWGC 9 cut(s) 11, 815, 818, 1082, 1112, 1115, 1493, 1529, 1544
TspDTI ATGAA 9 cut(s) 80, 111, 350, 409, 515, 579, 1065, 1208, 1565
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 2 cut(s) 1153, 1344
VpaK11BI GGWCC 2 cut(s) 4, 1297
XapI RAATTY 5 cut(s) 416, 734, 771, 1354, 1522
XceI RCATGY 2 cut(s) 53, 1385
XcmI CCANNNNNNNNNTGG 1 cut(s) 1291
XmaJI CCTAGG 1 cut(s) 953
XmiI GTMKAC 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 9 cut(s) 15, 191, 305, 413, 516, 603, 954, 1475, 1538
ZraI GACGTC 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.