MD11G1213500.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
31232215 .. 31235905
3691 bp
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UTR
Exon/CDS
Intron
MD11G1213500.v1.1.491

Sequence Viewer

Length: 1626 bp
ATGGAATCTGCAGCTAGTGATCATTCTATTCACAACTGCAGATCAATTGAAGCACAGCATGTCGTACTTTCTCCCGAGACGGCGGATGATCACGATCATCATGGGAAGCGAGTTGTAGATGAATTAGACTTCTTTGCTCATAAGGGTCGTTTGAAAGAAGCTAAAGATCACACGGCAGAAGTTAAAGAAGAATGCGATCATCACGGGGTTGGTCAAGAAAAGCAACTACCCGACGTAAATACTGGATTGAATCTTCTTACAACATACACCAGTAGCGACAAATCATCCATGGATGTTGGAACTTCGTCGTCCCGTAATATGGAAGACAAGCATAGAACAAATGAGTTGGCAGTTCTTCAAGCTGAACTAGGCCGTATGAATGTAGAAAATCAACGGTTGAGAGGTGTGATTCATCAGGTTAACACTAATTACCAGGCGTTGCAGGTGCACCTTGTGAAACTGAAAAATCAAAAGACTGATCAACAAGCTGCAGAACAACACAAGATGAACTTAAATGGATCAGAGGTACTAAAAGAGAAGCAGTTGATGAACGAGTTCAATAATCTTGCTCCAAGACAATTTATGGATATGGGAAGGGCTGAGAAAGATGAGCTTTCACAGTGTTCTCATGAAGGCTGCAGATCCCAAGATTGTTCTGGGTCGTTCCCTCGAAACAACATAGTCGAGTCAATGGAGTGCTGCAAGGGTACTAGTCATGTTCACAGGGATATTAGTGGAAGAAGTAGTACTACTGGGGCAGAAGACAGCCCTGACCACGAATTTCAAGGGTGGATTCCTAATAAGGTTCCCAAGTTGATGAGCCCTCCTAGGGAAGTGGATCAAGCCTCATCCGAAACCATATCCATGATTAAAAAAGCTCGGGTTTCTGTTCGAGCACGATCTGAAGCTTCCATGATATCTGATGGATGCCAATGGAGAAAGTATGGCCAGAAAATGGCTAAAGGAAATCCATGCCCTCGAGCTTATTATCGTTGCACTATGGCAACTGGTTGCCCAGTTCGCAAACAGGTACAAAGATGTGCGGAAGATCGAACAATACTTATAACAACATACGAAGGTCAACACAACCATCCACTCCCTCCAGCTGCAATGGCCATGGCATCTACTACATCAGCAGCAGCATCAATGCTTCTATCAGGCTCAAATCCTAGTGCCGATGGCCTAATAAGCTCAAACACCTTCCTAGCAAGAACAGGATTGCCTAACTGCCCACCAAGCTTGGCAACACTTTCGGCTACAGCCCCATTTCCTACTGTCACCTTGGACCTCACTCGCACTCCCACTTCCTCAGAGATGCCACTTGGCCAACCAAACCAGCACCCTTCAAATTTTCCCCACAACAATCTTATGTCTGTGCCACAAATTCTAGGTCAAGCCCTTTACAACCAACCCAAATTCTCGGTTCTCAATAGCCTTCAGGGGTTGGATAGTACTACACACTCACTGGCTGACAAAGTCAGTGCAGCAACAGCAGCCATCGCAGCTGACCCTAATTTCACAACGGCTCTGGTAGCAGCCATCACCTCTATCGTTGGCAATGTTCAGTCAAACAATAACACCAACAACAATGTTTCTCCAGGAAACGATAGTGGCAACAATACATGA

Protein Analysis

542

Amino Acids

58.97

Weight (kDa)

6.45

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 308 - 365 8.4e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013643)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1064
AarI CACCTGC 1 cut(s) 433
Acc36I ACCTGC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 955
AciI CCGC 2 cut(s) 83, 1043
AclWI GGATC 3 cut(s) 526, 636, 846
AcoI YGGCCR 3 cut(s) 946, 1113, 1324
AcsI RAATTY 4 cut(s) 779, 1348, 1383, 1415
AcuI CTGAAG 2 cut(s) 924, 1421
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 6 cut(s) 66, 528, 709, 748, 1032, 1453
AfiI CCNNNNNNNGG 3 cut(s) 319, 829, 955
AgsI TTSAA 7 cut(s) 50, 154, 250, 359, 559, 785, 1347
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 2 cut(s) 432, 1597
Alw21I GWGCWC 2 cut(s) 450, 898
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 3 cut(s) 526, 636, 846
Ama87I CYCGRG 3 cut(s) 74, 879, 978
AoxI GGCC 5 cut(s) 370, 946, 1113, 1180, 1324
ApaLI GTGCAC 1 cut(s) 446
ApoI RAATTY 4 cut(s) 779, 1348, 1383, 1415
ArsI GACNNNNNNTTYG 2 cut(s) 1375, 1407
Asp700I GAANNNNTTC 1 cut(s) 554
AspA2I CCTAGG 1 cut(s) 827
AspS9I GGNCC 1 cut(s) 1285
AsuHPI GGTGA 2 cut(s) 1270, 1534
AvaI CYCGRG 3 cut(s) 74, 879, 978
AvaII GGWCC 1 cut(s) 1285
AvrII CCTAGG 1 cut(s) 827
BaeGI GKGCMC 1 cut(s) 450
BalI TGGCCA 3 cut(s) 948, 1115, 1326
BanII GRGCYC 1 cut(s) 824
BarI GAAGNNNNNNTAC 4 cut(s) 730, 733, 762, 765
BbsI GAAGAC 2 cut(s) 330, 768
Bbv12I GWGCWC 2 cut(s) 450, 898
BccI CCATC 5 cut(s) 917, 1098, 1172, 1505, 1547
BceAI ACGGC 4 cut(s) 96, 189, 357, 1539
BcgI CGANNNNNNTGC 2 cut(s) 1233, 1267
BciT130I CCWGG 2 cut(s) 434, 1599
BclI TGATCA 3 cut(s) 19, 88, 478
BcoDI GTCTC 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 7 cut(s) 15, 368, 711, 828, 1170, 1205, 1388
BfmI CTRYAG 5 cut(s) 9, 37, 489, 637, 1257
BfuAI ACCTGC 1 cut(s) 433
BlnI CCTAGG 1 cut(s) 827
BmcAI AGTACT 2 cut(s) 748, 1453
Bme1390I CCNGG 2 cut(s) 434, 1599
Bme18I GGWCC 1 cut(s) 1285
BmeT110I CYCGRG 3 cut(s) 74, 879, 978
BmgT120I GGNCC 1 cut(s) 1285
BmiI GGNNCC 1 cut(s) 807
BmrFI CCNGG 2 cut(s) 434, 1599
BmrI ACTGGG 2 cut(s) 762, 1010
BmsI GCATC 4 cut(s) 917, 1130, 1151, 1305
BmuI ACTGGG 2 cut(s) 762, 1010
BpiI GAAGAC 2 cut(s) 330, 768
BpmI CTGGAG 2 cut(s) 1086, 1581
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 288, 827, 1116, 1281
BsaXI ACNNNNNCTCC 2 cut(s) 1282, 1312
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 829, 955
Bse1I ACTGG 6 cut(s) 247, 270, 757, 1012, 1016, 1470
Bse3DI GCAATG 2 cut(s) 1116, 1564
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 434, 1599
BseDI CCNNGG 4 cut(s) 288, 827, 1116, 1281
BseGI GGATG 6 cut(s) 91, 284, 298, 848, 932, 1090
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 3 cut(s) 319, 829, 955
BseMI GCAATG 2 cut(s) 1116, 1564
BseMII CTCAG 2 cut(s) 591, 1323
BseNI ACTGG 6 cut(s) 247, 270, 757, 1012, 1016, 1470
BseSI GKGCMC 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 1503
BshFI GGCC 5 cut(s) 372, 948, 1115, 1182, 1326
BsiHKAI GWGCWC 2 cut(s) 450, 898
BsiHKCI CYCGRG 3 cut(s) 74, 879, 978
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 3 cut(s) 319, 829, 955
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 5 cut(s) 372, 948, 1115, 1182, 1326
BsoBI CYCGRG 3 cut(s) 74, 879, 978
Bsp1286I GDGCHC 3 cut(s) 450, 824, 898
Bsp19I CCATGG 2 cut(s) 288, 1116
BspACI CCGC 2 cut(s) 83, 1043
BspANI GGCC 5 cut(s) 372, 948, 1115, 1182, 1326
BspCNI CTCAG 2 cut(s) 592, 1322
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 807
BspMAI CTGCAG 4 cut(s) 13, 41, 493, 641
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 3 cut(s) 526, 636, 846
BsrDI GCAATG 2 cut(s) 1116, 1564
BsrI ACTGG 6 cut(s) 247, 270, 757, 1012, 1016, 1470
BssECI CCNNGG 4 cut(s) 288, 827, 1116, 1281
BssT1I CCWWGG 4 cut(s) 288, 827, 1116, 1281
Bst2UI CCWGG 2 cut(s) 434, 1599
Bst4CI ACNGT 3 cut(s) 396, 621, 1276
BstDEI CTNAG 2 cut(s) 600, 1309
BstDSI CCRYGG 2 cut(s) 288, 1116
BstF5I GGATG 6 cut(s) 91, 284, 298, 848, 932, 1090
BstMAI GTCTC 1 cut(s) 71
BstMWI GCNNNNNNNGC 9 cut(s) 1020, 1112, 1188, 1236, 1490, 1493, 1499, 1502, 1532
BstNI CCWGG 2 cut(s) 434, 1599
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 432, 1597
BstSFI CTRYAG 5 cut(s) 9, 37, 489, 637, 1257
BstSLI GKGCMC 1 cut(s) 450
BstV2I GAAGAC 2 cut(s) 330, 768
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 5 cut(s) 372, 948, 1115, 1182, 1326
BtgI CCRYGG 2 cut(s) 288, 1116
BtgZI GCGATG 1 cut(s) 1483
BtsCI GGATG 6 cut(s) 91, 284, 298, 848, 932, 1090
BtsIMutI CAGTG 3 cut(s) 626, 1463, 1486
BveI ACCTGC 1 cut(s) 433
CciI TCATGA 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 1285
Csp6I GTAC 6 cut(s) 65, 527, 708, 747, 1031, 1452
CspCI CAANNNNNGTGG 2 cut(s) 1221, 1256
CviQI GTAC 6 cut(s) 65, 527, 708, 747, 1031, 1452
DdeI CTNAG 2 cut(s) 600, 1309
DraIII CACNNNGTG 1 cut(s) 454
EaeI YGGCCR 3 cut(s) 946, 1113, 1324
EciI GGCGGA 1 cut(s) 98
Eco130I CCWWGG 4 cut(s) 288, 827, 1116, 1281
Eco24I GRGCYC 1 cut(s) 824
Eco32I GATATC 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 1285
Eco57I CTGAAG 2 cut(s) 924, 1421
Eco88I CYCGRG 3 cut(s) 74, 879, 978
EcoRII CCWGG 2 cut(s) 432, 1597
EcoRV GATATC 1 cut(s) 918
EcoT14I CCWWGG 4 cut(s) 288, 827, 1116, 1281
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 4 cut(s) 288, 827, 1116, 1281
Esp3I CGTCTC 1 cut(s) 71
FalI AAGNNNNNCTT 4 cut(s) 494, 526, 597, 629
FaqI GGGAC 1 cut(s) 295
FbaI TGATCA 3 cut(s) 19, 88, 478
FokI GGATG 6 cut(s) 98, 271, 305, 835, 939, 1077
FriOI GRGCYC 1 cut(s) 824
FspBI CTAG 7 cut(s) 15, 368, 711, 828, 1170, 1205, 1388
GsuI CTGGAG 2 cut(s) 1086, 1581
HaeIII GGCC 5 cut(s) 372, 948, 1115, 1182, 1326
HincII GTYRAC 2 cut(s) 421, 1082
HindII GTYRAC 2 cut(s) 421, 1082
HindIII AAGCTT 2 cut(s) 906, 1237
HinfI GANTC 5 cut(s) 5, 250, 409, 686, 793
HpaI GTTAAC 1 cut(s) 421
HphI GGTGA 2 cut(s) 1270, 1534
Hpy166II GTNNAC 4 cut(s) 421, 448, 721, 1082
Hpy188I TCNGA 5 cut(s) 523, 853, 904, 922, 1312
Hpy188III TCNNGA 4 cut(s) 74, 92, 215, 629
Hpy8I GTNNAC 4 cut(s) 421, 448, 721, 1082
Hpy99I CGWCG 2 cut(s) 236, 310
HpyAV CCTTC 6 cut(s) 588, 626, 1070, 1210, 1353, 1445
HpyCH4III ACNGT 3 cut(s) 396, 621, 1276
HpyCH4IV ACGT 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 9 cut(s) 1020, 1112, 1188, 1236, 1490, 1493, 1499, 1502, 1532
HpyF3I CTNAG 2 cut(s) 600, 1309
HpySE526I ACGT 1 cut(s) 234
Ksp22I TGATCA 3 cut(s) 19, 88, 478
KspAI GTTAAC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 574
LweI GCATC 4 cut(s) 917, 1130, 1151, 1305
MaeI CTAG 7 cut(s) 15, 368, 711, 828, 1170, 1205, 1388
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 1276
MboII GAAGA 7 cut(s) 200, 245, 335, 347, 750, 773, 1058
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 3 cut(s) 450, 824, 898
MlsI TGGCCA 3 cut(s) 948, 1115, 1326
MluCI AATT 9 cut(s) 45, 122, 427, 578, 779, 1348, 1383, 1415, 1513
MluNI TGGCCA 3 cut(s) 948, 1115, 1326
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 2 cut(s) 277, 1425
Mox20I TGGCCA 3 cut(s) 948, 1115, 1326
MroXI GAANNNNTTC 1 cut(s) 554
MscI TGGCCA 3 cut(s) 948, 1115, 1326
MseI TTAA 4 cut(s) 183, 420, 512, 870
MslI CAYNNNNRTG 1 cut(s) 863
Msp20I TGGCCA 3 cut(s) 948, 1115, 1326
MspA1I CMGCKG 2 cut(s) 1106, 1505
MspR9I CCNGG 2 cut(s) 434, 1599
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 2 cut(s) 434, 1599
MwoI GCNNNNNNNGC 9 cut(s) 1020, 1112, 1188, 1236, 1490, 1493, 1499, 1502, 1532
NcoI CCATGG 2 cut(s) 288, 1116
NlaIV GGNNCC 1 cut(s) 807
NmuCI GTSAC 1 cut(s) 1276
NspI RCATGY 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 1 cut(s) 628
PaqCI CACCTGC 1 cut(s) 433
PctI GAATGC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 4 cut(s) 5, 250, 409, 793
PflFI GACNNNGTC 1 cut(s) 1475
PflMI CCANNNNNTGG 1 cut(s) 955
PfoI TCCNGGA 1 cut(s) 1597
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PsiI TTATAA 1 cut(s) 1064
Psp6I CCWGG 2 cut(s) 432, 1597
PspGI CCWGG 2 cut(s) 432, 1597
PspN4I GGNNCC 1 cut(s) 807
PspPI GGNCC 1 cut(s) 1285
PspXI VCTCGAGB 1 cut(s) 978
PstI CTGCAG 4 cut(s) 13, 41, 493, 641
PsuI RGATCY 1 cut(s) 641
PsyI GACNNNGTC 1 cut(s) 1475
PvuII CAGCTG 2 cut(s) 1106, 1505
RsaI GTAC 6 cut(s) 66, 528, 709, 748, 1032, 1453
RsaNI GTAC 6 cut(s) 65, 527, 708, 747, 1031, 1452
RseI CAYNNNNRTG 1 cut(s) 863
SaqAI TTAA 4 cut(s) 183, 420, 512, 870
Sau96I GGNCC 1 cut(s) 1285
ScaI AGTACT 2 cut(s) 748, 1453
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 2 cut(s) 434, 1599
SduI GDGCHC 3 cut(s) 450, 824, 898
SfaNI GCATC 4 cut(s) 917, 1130, 1151, 1305
SfcI CTRYAG 5 cut(s) 9, 37, 489, 637, 1257
Sfr274I CTCGAG 1 cut(s) 978
SinI GGWCC 1 cut(s) 1285
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 978
SmoI CTYRAG 1 cut(s) 978
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 9 cut(s) 45, 122, 427, 578, 779, 1348, 1383, 1415, 1513
SsiI CCGC 2 cut(s) 83, 1043
SspMI CTAG 7 cut(s) 15, 368, 711, 828, 1170, 1205, 1388
StyD4I CCNGG 2 cut(s) 432, 1597
StyI CCWWGG 4 cut(s) 288, 827, 1116, 1281
TaaI ACNGT 3 cut(s) 396, 621, 1276
TaiI ACGT 1 cut(s) 237
TaqI TCGA 5 cut(s) 670, 684, 892, 979, 1051
TasI AATT 9 cut(s) 45, 122, 427, 578, 779, 1348, 1383, 1415, 1513
TatI WGTACW 2 cut(s) 746, 1451
TfiI GAWTC 4 cut(s) 5, 250, 409, 793
Tru1I TTAA 4 cut(s) 183, 420, 512, 870
Tru9I TTAA 4 cut(s) 183, 420, 512, 870
TscAI CASTG 3 cut(s) 626, 1470, 1486
TseFI GTSAC 1 cut(s) 1276
Tsp45I GTSAC 1 cut(s) 1276
TspDTI ATGAA 6 cut(s) 135, 392, 401, 521, 563, 645
TspRI CASTG 3 cut(s) 626, 1470, 1486
Tth111I GACNNNGTC 1 cut(s) 1475
Van91I CCANNNNNTGG 1 cut(s) 955
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 1285
XapI RAATTY 4 cut(s) 779, 1348, 1383, 1415
XceI RCATGY 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XhoI CTCGAG 1 cut(s) 978
XmaJI CCTAGG 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 7 cut(s) 15, 368, 711, 828, 1170, 1205, 1388
ZrmI AGTACT 2 cut(s) 748, 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.