Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013643

Physical Location & Seq

Genomic Coordinates Reverse (-)

18220238 .. 18221284

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0187500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTATTGCCCCCCAATAGACAGATTTCTATTCGCAGTATTCTCTACACTTTTCACCACAATCCTCTGTTTAATATTACTTGTTTGGCTTATACTACACCCCACCAAGCCTCAGTTCTCTCTCAAAGAAGCTGATATCTACCAGCTCAACCTCTCAGGAACCAATAACCTCCTCAACTCCTCCGTCCAACTCACCTTGCTTTCCAAGAATCCCAATCAAAAAGTTGGCATATACTACGACGAGCTTCAAATCTATGCTCAATACAAAGGCCAACAGATCACAGTTTACACATCTCTGCCTCCTTTCTACCAAGGACACGAAGACAGCAATGTCTTGACGGCTTCTTTGATTGGAAATGGTTTGCCGGTGGCTCCCTCTTTCGACGGCTGGGAGATTGGTTTTGAATCTCTAAGTGCTCGGACGACTAAGGTGGAAGGTAGGAACTTGGGTGTCCGGGAGATACAGAGTGAACGTGGATTGCGTTGTTGCAAACTCGTCTCCGGCGCCGCCAACAACGACGCCGCCCCCAACTCCAAGGTCCTCACCTTCGCCAATCCTTTCTGGATCGAAATCTGTCACCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010036 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042493 GO:0042594 GO:0044212 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071496 GO:0080029 GO:0080090 GO:0080169 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

195

Amino Acids

21.78

Weight (kDa)

6.28

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	65 - 116	3.4e-08	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23150
malus_domestica	MD03G1197600.v1.1 MD11G1213500.v1.1
prunus_persica	Prupe.4G217900_v2.0.a1
pyrus_communis	pycom03g14910 pycom11g18810 pycom12g06880
rosa_chinensis	RchiOBHm_Chr5g0040801
rosa_laevigata	RLG00000034002
rosa_multiflora	Rmu_sc0001579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039900
rosa_rugosa	Rorug05G0187400 Rorug05G0187500
rosa_samantha	Rh5AG273100 Rh5BG278200 Rh5CG310200 Rh5DG286100
rosa_wichuraiana	Rw5G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	503
AciI	CCGC	2 cut(s)	507, 522
AclWI	GGATC	1 cut(s)	572
AcyI	GRCGYC	2 cut(s)	504, 519
AgsI	TTSAA	2 cut(s)	248, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	3 cut(s)	131, 145, 244
AluI	AGCT	3 cut(s)	131, 145, 244
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	4 cut(s)	46, 184, 535, 569
AvaII	GGWCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	418
BceAI	ACGGC	2 cut(s)	354, 400
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	502
BfoI	RGCGCY	1 cut(s)	507
BisI	GCNGC	2 cut(s)	507, 522
BlsI	GCNGC	2 cut(s)	508, 523
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	3 cut(s)	160, 372, 505
BmrFI	CCNGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	569
BsaHI	GRCGYC	2 cut(s)	504, 519
BsaJI	CCNNGG	2 cut(s)	310, 534
Bse118I	RCCGGY	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	310, 534
BseJI	GATNNNNATC	1 cut(s)	569
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	125, 168
BseRI	GAGGAG	2 cut(s)	161, 169
BseYI	CCCAGC	1 cut(s)	387
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	3 cut(s)	365, 454, 501
BsmAI	GTCTC	1 cut(s)	502
BsmBI	CGTCTC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	276, 564
BspACI	CCGC	2 cut(s)	507, 522
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	2 cut(s)	124, 167
BspLI	GGNNCC	3 cut(s)	160, 372, 505
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	310, 534
BssMI	GATC	2 cut(s)	276, 564
BssNI	GRCGYC	2 cut(s)	504, 519
BssT1I	CCWWGG	2 cut(s)	310, 534
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	2 cut(s)	504, 519
BstDEI	CTNAG	4 cut(s)	111, 154, 410, 426
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	2 cut(s)	279, 567
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	276, 564
BstSCI	CCNGG	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	506
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	538
CseI	GACGC	1 cut(s)	527
CviJI	RGCY	9 cut(s)	88, 109, 131, 145, 244, 270, 341, 371, 387
CviKI_1	RGCY	9 cut(s)	88, 109, 131, 145, 244, 270, 341, 371, 387
DdeI	CTNAG	4 cut(s)	111, 154, 410, 426
DinI	GGCGCC	1 cut(s)	505
DpnI	GATC	2 cut(s)	278, 566
DpnII	GATC	2 cut(s)	276, 564
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco130I	CCWWGG	2 cut(s)	310, 534
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	310, 534
EgeI	GGCGCC	1 cut(s)	505
EheI	GGCGCC	1 cut(s)	505
ErhI	CCWWGG	2 cut(s)	310, 534
Esp3I	CGTCTC	1 cut(s)	502
FaiI	YATR	4 cut(s)	92, 230, 232, 255
Fnu4HI	GCNGC	2 cut(s)	507, 522
Fsp4HI	GCNGC	2 cut(s)	507, 522
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	2 cut(s)	507, 522
GsaI	CCCAGC	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	3 cut(s)	365, 454, 501
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	506
Hin1I	GRCGYC	2 cut(s)	504, 519
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HinfI	GANTC	2 cut(s)	208, 404
HpaII	CCGG	3 cut(s)	365, 454, 501
HphI	GGTGA	4 cut(s)	46, 184, 535, 569
Hpy166II	GTNNAC	2 cut(s)	286, 470
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	3 cut(s)	156, 334, 562
Hpy8I	GTNNAC	2 cut(s)	286, 470
Hpy99I	CGWCG	3 cut(s)	242, 386, 521
HpyAV	CCTTC	2 cut(s)	428, 556
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	1 cut(s)	489
HpyF3I	CTNAG	4 cut(s)	111, 154, 410, 426
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	2 cut(s)	504, 519
HspAI	GCGC	1 cut(s)	504
KasI	GGCGCC	1 cut(s)	503
Kzo9I	GATC	2 cut(s)	276, 564
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	7 cut(s)	141, 155, 373, 378, 467, 514, 547
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	2 cut(s)	278, 566
MboI	GATC	2 cut(s)	276, 564
MboII	GAAGA	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	418
Mly113I	GGCGCC	1 cut(s)	504
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	9 cut(s)	74, 120, 161, 179, 182, 190, 309, 385, 551
MseI	TTAA	1 cut(s)	71
MspI	CCGG	3 cut(s)	365, 454, 501
MspR9I	CCNGG	1 cut(s)	455
NarI	GGCGCC	1 cut(s)	504
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	2 cut(s)	276, 564
NlaIV	GGNNCC	3 cut(s)	160, 372, 505
NmuCI	GTSAC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	208, 404
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	508, 523
PluTI	GGCGCC	1 cut(s)	507
PpuMI	RGGWCCY	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	160, 372, 505
PspPI	GGNCC	1 cut(s)	538
PspPPI	RGGWCCY	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	507, 522
Sau3AI	GATC	2 cut(s)	276, 564
Sau96I	GGNCC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	505
SinI	GGWCC	1 cut(s)	538
SsiI	CCGC	2 cut(s)	507, 522
SspDI	GGCGCC	1 cut(s)	503
SspI	AATATT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	2 cut(s)	310, 534
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	381, 567
TauI	GCSGC	2 cut(s)	509, 524
TfiI	GAWTC	2 cut(s)	208, 404
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.