Rh5AG273100
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
36553342 .. 36556377
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG273100.1

Sequence Viewer

Length: 1725 bp
ATGGATCCAGCTGCTAGTGACCATTCGATTCATAGCTCCAGAATTGAGCATGTGTTGTCTCCGGCGACCGCGGATGGGAAGCGGGTGGTTCATGATGAACTGGACTTCTTTGCTGATCATCACAAGGGTTGTCTGAAAGAAACAGATCAAACCCTTGAAGTTAAAGAAGACATGGCTCATGAAAACCATCTAGATGTAAATATATGCAAACTAGCTAGTTCAATTTTGATCTGTATGTTTTCTTTAATTATTTCTTACTGTTATTATTGGGTGTTTGTTTTCGTGGTCCAGACTGGTTTAAATCTTCTAACCACATATACGAGTACCAGCGATAAATCATCTACGGATGATGGATCAACATCCCATAGCATGGAAGATCACAAACAAACAATAAGTGAGCTAGAAGTTGTTCAAGCTGAATTGGGCCGTATGAACGTAGAGAATCAACGGTTGAGAGTTATGATTACTCAGGTGAACAACAATTACAAGAGCTTGCAAGTGCATCTCGTGGAATTCATGCAACGCCAGCAAAATCAATCAGTACAACAACACAAGATGGTCATAAATGGATCAGCACCAGAAGAGAAGCAGATAATGAACAATATTGTTCCTAGACAATTTATGGATATGGGCAGGGCTGCAAATATCCCTCATCATGAGAAAAATGAGCTTGTTTCACACTCTTCATTGGATATGGTTAGATCTAATAACGATTGTTCTCTTTCTCCTCCCATCGTTGAGTCAATGGATCACTGCAAGAGTACAGTTCATAGGAGCAGTAAAAGAACTTCTGCGGGTGCTGAAGATAGCCCGGAACGACAAGAATTTCAAGCTGGGAGTCCTGGTTGGGTTCCTAAGAAAATTCCCAAGTTGAATTCCGGAGACGCTGACGTTGATCATCAGGCCTCTGAAGAAACCATGTCCATGATCAAGAAAGCTCGTGTTTCTGTTCGAGCACGATCTGAAGCTTCCATGATATCTGACGGATGCCAATGGAGAAAGTATGGTCAGAAAATGGCTAAAGGGAACCCTTGCCCTAGGGCTTATTATCGTTGTACCATGGGAACTGGTTGCCCAGTTCGAAAACAGGTACAAAGATGTGCAGAAGACAAAACCATACTCATAACTACTTACGAAGGGCAACACAACCACCCGCTCCCACCTACTGCAATGGCTATGGCATCTACTACATCAGCAGCAGCATCAATGCTACTCTCCGGCTCAATGCCCAGTGCTGATCATCATCCTCACCATGCCCTAATAAACTCATCATCAAACACTTTCTTACAGAGAACAGCTATTCATCATCCACAGCTACCAAATTGCCCACCAAGCTTTGCAACTCTTTCAGCTTCAGCCCCGTTTCCCACGGTTACATTGGACCTCACTCGCTCTCCAGCTACTTCATCAGAGACTATGGCACTGAACCAATTACCAAATTTTTCTCAAAACATGCCTCTGCCACATGCTTTAGGCCAAGCCCTTTGCAACAACGAATCAAAACTCTCCCTTCTCGATGGCTTTCGGGGATTGGACGCTACTTCAAATCACTCAATCCTGGCTGACAAAGTGAGTGCAGCTACGGCAGCCATCACAGCTGATCCTAATTTCACAGCAGCTCTAGTGGCAGCCATCACCTCTATCATTGGGAATAATGTTCATTCAAACAACAATACCAACAGTTCCAACATTACTACAAGAAACAGCAGTGATGACAATACATGA

Protein Analysis

574

Amino Acids

63.0

Weight (kDa)

6.35

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 328 - 385 1.9e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013643)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 370
AccBSI CCGCTC 1 cut(s) 1156
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 878
AciI CCGC 5 cut(s) 69, 71, 82, 794, 1154
AclWI GGATC 5 cut(s) 12, 361, 577, 756, 1595
AcsI RAATTY 5 cut(s) 512, 824, 861, 874, 1438
AcuI CTGAAG 4 cut(s) 822, 930, 984, 1338
AfaI GTAC 5 cut(s) 325, 543, 763, 1057, 1092
AfiI CCNNNNNNNGG 2 cut(s) 75, 370
AgsI TTSAA 7 cut(s) 158, 222, 413, 830, 874, 1545, 1665
AjnI CCWGG 2 cut(s) 841, 1557
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 3 cut(s) 63, 876, 1406
AlwI GGATC 5 cut(s) 12, 361, 577, 756, 1595
Aor13HI TCCGGA 1 cut(s) 878
AoxI GGCC 3 cut(s) 424, 903, 1474
ApeKI GCWGC 8 cut(s) 11, 638, 1196, 1199, 1577, 1586, 1616, 1628
ApoI RAATTY 5 cut(s) 512, 824, 861, 874, 1438
Asp700I GAANNNNTTC 1 cut(s) 408
AspA2I CCTAGG 1 cut(s) 1037
AspS9I GGNCC 3 cut(s) 286, 424, 1381
AsuC2I CCSGG 1 cut(s) 812
AsuHPI GGTGA 3 cut(s) 484, 1241, 1627
AsuII TTCGAA 1 cut(s) 1081
AvaII GGWCC 2 cut(s) 286, 1381
AvrII CCTAGG 1 cut(s) 1037
BamHI GGATCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 772, 804
BauI CACGAG 2 cut(s) 506, 939
BbsI GAAGAC 2 cut(s) 174, 1113
Bbv12I GWGCWC 1 cut(s) 958
BbvI GCAGC 7 cut(s) 625, 1208, 1211, 1589, 1598, 1628, 1640
BccI CCATC 8 cut(s) 68, 195, 344, 550, 740, 1511, 1598, 1640
BceAI ACGGC 2 cut(s) 411, 1599
BciT130I CCWGG 2 cut(s) 843, 1559
BclI TGATCA 4 cut(s) 115, 895, 927, 1237
BcnI CCSGG 1 cut(s) 812
BcoDI GTCTC 3 cut(s) 63, 876, 1406
BfaI CTAG 8 cut(s) 15, 191, 212, 216, 401, 612, 1038, 1622
BglII AGATCT 1 cut(s) 701
BisI GCNGC 8 cut(s) 12, 639, 1197, 1200, 1578, 1587, 1617, 1629
BlnI CCTAGG 1 cut(s) 1037
BlsI GCNGC 8 cut(s) 13, 640, 1198, 1201, 1579, 1588, 1618, 1630
Bme1390I CCNGG 3 cut(s) 812, 843, 1559
Bme18I GGWCC 2 cut(s) 286, 1381
BmgT120I GGNCC 3 cut(s) 286, 424, 1381
BmiI GGNNCC 3 cut(s) 6, 852, 1028
BmrFI CCNGG 3 cut(s) 812, 843, 1559
BmrI ACTGGG 2 cut(s) 1070, 1224
BmsI GCATC 4 cut(s) 511, 977, 1190, 1211
BmuI ACTGGG 2 cut(s) 1070, 1224
BpiI GAAGAC 2 cut(s) 174, 1113
BpmI CTGGAG 2 cut(s) 22, 1380
Bpu14I TTCGAA 1 cut(s) 1081
BpuMI CCSGG 1 cut(s) 812
BsaBI GATNNNNATC 2 cut(s) 358, 1242
BsaJI CCNNGG 4 cut(s) 69, 1037, 1059, 1368
BsaWI WCCGGW 1 cut(s) 878
BsaXI ACNNNNNCTCC 4 cut(s) 829, 859, 1378, 1408
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 370
Bse1I ACTGG 5 cut(s) 105, 298, 1072, 1076, 1230
Bse3DI GCAATG 1 cut(s) 1176
Bse8I GATNNNNATC 2 cut(s) 358, 1242
BseAI TCCGGA 1 cut(s) 878
BseBI CCWGG 2 cut(s) 843, 1559
BseDI CCNNGG 4 cut(s) 69, 1037, 1059, 1368
BseGI GGATG 6 cut(s) 79, 352, 359, 992, 1243, 1306
BseJI GATNNNNATC 2 cut(s) 358, 1242
BseLI CCNNNNNNNGG 2 cut(s) 75, 370
BseMI GCAATG 1 cut(s) 1176
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 5 cut(s) 105, 298, 1072, 1076, 1230
BseRI GAGGAG 1 cut(s) 717
BseXI GCAGC 7 cut(s) 625, 1208, 1211, 1589, 1598, 1628, 1640
BseYI CCCAGC 1 cut(s) 833
BsgI GTGCAG 2 cut(s) 1122, 1596
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 426, 905, 1476
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 958
BsiSI CCGG 4 cut(s) 62, 812, 879, 1218
BslI CCNNNNNNNGG 2 cut(s) 75, 370
BsmAI GTCTC 3 cut(s) 63, 876, 1406
BsmBI CGTCTC 1 cut(s) 876
BsnI GGCC 3 cut(s) 426, 905, 1476
Bsp119I TTCGAA 1 cut(s) 1081
Bsp1286I GDGCHC 1 cut(s) 958
Bsp13I TCCGGA 1 cut(s) 878
Bsp19I CCATGG 1 cut(s) 1059
BspACI CCGC 5 cut(s) 69, 71, 82, 794, 1154
BspANI GGCC 3 cut(s) 426, 905, 1476
BspCNI CTCAG 1 cut(s) 481
BspEI TCCGGA 1 cut(s) 878
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 3 cut(s) 91, 178, 655
BspLI GGNNCC 3 cut(s) 6, 852, 1028
BspPI GGATC 5 cut(s) 12, 361, 577, 756, 1595
BspT104I TTCGAA 1 cut(s) 1081
BsrBI CCGCTC 1 cut(s) 1156
BsrDI GCAATG 1 cut(s) 1176
BsrI ACTGG 5 cut(s) 105, 298, 1072, 1076, 1230
BssECI CCNNGG 4 cut(s) 69, 1037, 1059, 1368
BssSI CACGAG 2 cut(s) 506, 939
BssT1I CCWWGG 2 cut(s) 1037, 1059
Bst2BI CACGAG 2 cut(s) 506, 939
Bst2UI CCWGG 2 cut(s) 843, 1559
Bst4CI ACNGT 5 cut(s) 260, 450, 766, 1372, 1682
Bst6I CTCTTC 2 cut(s) 576, 688
BstBI TTCGAA 1 cut(s) 1081
BstC8I GCNNGC 2 cut(s) 494, 527
BstDEI CTNAG 2 cut(s) 468, 855
BstDSI CCRYGG 3 cut(s) 69, 1059, 1368
BstF5I GGATG 6 cut(s) 79, 352, 359, 992, 1243, 1306
BstFNI CGCG 1 cut(s) 71
BstMAI GTCTC 3 cut(s) 63, 876, 1406
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 526, 1332, 1583, 1586, 1595, 1625
BstNI CCWGG 2 cut(s) 843, 1559
BstNSI RCATGY 3 cut(s) 53, 1456, 1469
BstSCI CCNGG 3 cut(s) 810, 841, 1557
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 7 cut(s) 625, 1208, 1211, 1589, 1598, 1628, 1640
BstV2I GAAGAC 2 cut(s) 174, 1113
BstX2I RGATCY 2 cut(s) 4, 701
BstYI RGATCY 2 cut(s) 4, 701
BsuRI GGCC 3 cut(s) 426, 905, 1476
BtgI CCRYGG 3 cut(s) 69, 1059, 1368
BtsCI GGATG 6 cut(s) 79, 352, 359, 992, 1243, 1306
BtsI GCAGTG 2 cut(s) 751, 1714
BtsIMutI CAGTG 4 cut(s) 751, 1237, 1421, 1714
Cac8I GCNNGC 2 cut(s) 494, 527
CciI TCATGA 3 cut(s) 91, 178, 655
Cfr13I GGNCC 3 cut(s) 286, 424, 1381
Cfr42I CCGCGG 1 cut(s) 72
CseI GACGC 2 cut(s) 893, 1544
Csp6I GTAC 5 cut(s) 324, 542, 762, 1056, 1091
CviQI GTAC 5 cut(s) 324, 542, 762, 1056, 1091
DdeI CTNAG 2 cut(s) 468, 855
DraI TTTAAA 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 576, 688
EarI CTCTTC 2 cut(s) 576, 688
Eco130I CCWWGG 2 cut(s) 1037, 1059
Eco147I AGGCCT 1 cut(s) 905
Eco32I GATATC 1 cut(s) 978
Eco47I GGWCC 2 cut(s) 286, 1381
Eco57I CTGAAG 4 cut(s) 822, 930, 984, 1338
EcoRI GAATTC 2 cut(s) 512, 874
EcoRII CCWGG 2 cut(s) 841, 1557
EcoRV GATATC 1 cut(s) 978
EcoT14I CCWWGG 2 cut(s) 1037, 1059
ErhI CCWWGG 2 cut(s) 1037, 1059
Esp3I CGTCTC 1 cut(s) 876
FauI CCCGC 3 cut(s) 75, 787, 1161
FbaI TGATCA 4 cut(s) 115, 895, 927, 1237
Fnu4HI GCNGC 8 cut(s) 12, 639, 1197, 1200, 1578, 1587, 1617, 1629
FokI GGATG 6 cut(s) 86, 346, 359, 999, 1230, 1293
Fsp4HI GCNGC 8 cut(s) 12, 639, 1197, 1200, 1578, 1587, 1617, 1629
FspBI CTAG 8 cut(s) 15, 191, 212, 216, 401, 612, 1038, 1622
GluI GCNGC 8 cut(s) 12, 639, 1197, 1200, 1578, 1587, 1617, 1629
GsaI CCCAGC 1 cut(s) 837
GsuI CTGGAG 2 cut(s) 22, 1380
HaeIII GGCC 3 cut(s) 426, 905, 1476
HapII CCGG 4 cut(s) 62, 812, 879, 1218
HgaI GACGC 2 cut(s) 893, 1544
HindIII AAGCTT 2 cut(s) 966, 1333
HinfI GANTC 5 cut(s) 28, 442, 740, 838, 1496
HpaII CCGG 4 cut(s) 62, 812, 879, 1218
HphI GGTGA 3 cut(s) 484, 1241, 1627
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 6 cut(s) 135, 910, 964, 982, 1011, 1411
Hpy188III TCNNGA 9 cut(s) 39, 92, 179, 191, 289, 656, 879, 931, 1514
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 1130, 1520
HpyCH4III ACNGT 5 cut(s) 260, 450, 766, 1372, 1682
HpyCH4IV ACGT 2 cut(s) 435, 891
HpyF10VI GCNNNNNNNGC 6 cut(s) 526, 1332, 1583, 1586, 1595, 1625
HpyF3I CTNAG 2 cut(s) 468, 855
HpySE526I ACGT 2 cut(s) 435, 891
Kpn2I TCCGGA 1 cut(s) 878
Ksp22I TGATCA 4 cut(s) 115, 895, 927, 1237
KspI CCGCGG 1 cut(s) 72
LmnI GCTCC 3 cut(s) 41, 774, 1161
Lsp1109I GCAGC 7 cut(s) 625, 1208, 1211, 1589, 1598, 1628, 1640
LweI GCATC 4 cut(s) 511, 977, 1190, 1211
MaeI CTAG 8 cut(s) 15, 191, 212, 216, 401, 612, 1038, 1622
MaeII ACGT 2 cut(s) 435, 891
MaeIII GTNAC 2 cut(s) 17, 1372
MbiI CCGCTC 1 cut(s) 1156
MboII GAAGA 8 cut(s) 179, 296, 386, 593, 675, 815, 923, 1118
MflI RGATCY 2 cut(s) 4, 701
MhlI GDGCHC 1 cut(s) 958
MlyI GAGTC 2 cut(s) 749, 847
MmeI TCCRAC 1 cut(s) 1710
MnlI CCTC 7 cut(s) 660, 738, 916, 1257, 1394, 1467, 1648
MroI TCCGGA 1 cut(s) 878
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 3 cut(s) 162, 245, 299
MslI CAYNNNNRTG 2 cut(s) 192, 923
MspA1I CMGCKG 3 cut(s) 11, 71, 1598
MspI CCGG 4 cut(s) 62, 812, 879, 1218
MspR9I CCNGG 3 cut(s) 812, 843, 1559
MvaI CCWGG 2 cut(s) 843, 1559
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 6 cut(s) 526, 1332, 1583, 1586, 1595, 1625
NciI CCSGG 1 cut(s) 812
NcoI CCATGG 1 cut(s) 1059
NlaIV GGNNCC 3 cut(s) 6, 852, 1028
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 3 cut(s) 53, 1456, 1469
NspV TTCGAA 1 cut(s) 1081
PagI TCATGA 3 cut(s) 91, 178, 655
PceI AGGCCT 1 cut(s) 905
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 3 cut(s) 28, 442, 1496
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 8 cut(s) 13, 640, 1198, 1201, 1579, 1588, 1618, 1630
PleI GAGTC 2 cut(s) 748, 846
PpsI GAGTC 2 cut(s) 748, 846
Psp6I CCWGG 2 cut(s) 841, 1557
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 2 cut(s) 841, 1557
PspN4I GGNNCC 3 cut(s) 6, 852, 1028
PspPI GGNCC 3 cut(s) 286, 424, 1381
PsrI GAACNNNNNNTAC 2 cut(s) 467, 499
PsuI RGATCY 2 cut(s) 4, 701
PvuII CAGCTG 2 cut(s) 11, 1598
RsaI GTAC 5 cut(s) 325, 543, 763, 1057, 1092
RsaNI GTAC 5 cut(s) 324, 542, 762, 1056, 1091
RseI CAYNNNNRTG 2 cut(s) 192, 923
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 3 cut(s) 162, 245, 299
SatI GCNGC 8 cut(s) 12, 639, 1197, 1200, 1578, 1587, 1617, 1629
Sau96I GGNCC 3 cut(s) 286, 424, 1381
SchI GAGTC 2 cut(s) 749, 847
ScrFI CCNGG 3 cut(s) 812, 843, 1559
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 4 cut(s) 511, 977, 1190, 1211
Sfr303I CCGCGG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 1081
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 2 cut(s) 286, 1381
SmiMI CAYNNNNRTG 2 cut(s) 192, 923
SseBI AGGCCT 1 cut(s) 905
SsiI CCGC 5 cut(s) 69, 71, 82, 794, 1154
SspI AATATT 1 cut(s) 604
SspMI CTAG 8 cut(s) 15, 191, 212, 216, 401, 612, 1038, 1622
StuI AGGCCT 1 cut(s) 905
StyD4I CCNGG 3 cut(s) 810, 841, 1557
StyI CCWWGG 2 cut(s) 1037, 1059
TaaI ACNGT 5 cut(s) 260, 450, 766, 1372, 1682
TaiI ACGT 2 cut(s) 438, 894
TaqI TCGA 4 cut(s) 26, 952, 1081, 1515
TatI WGTACW 2 cut(s) 541, 761
TfiI GAWTC 3 cut(s) 28, 442, 1496
Tru1I TTAA 3 cut(s) 162, 245, 299
Tru9I TTAA 3 cut(s) 162, 245, 299
TscAI CASTG 4 cut(s) 758, 1237, 1428, 1714
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 8 cut(s) 11, 638, 1196, 1199, 1577, 1586, 1616, 1628
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 359, 999
TspRI CASTG 4 cut(s) 758, 1237, 1428, 1714
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 2 cut(s) 286, 1381
XapI RAATTY 5 cut(s) 512, 824, 861, 874, 1438
XbaI TCTAGA 1 cut(s) 190
XceI RCATGY 3 cut(s) 53, 1456, 1469
XcmI CCANNNNNNNNNTGG 1 cut(s) 1375
XmaJI CCTAGG 1 cut(s) 1037
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 8 cut(s) 15, 191, 212, 216, 401, 612, 1038, 1622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.