Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013643

Physical Location & Seq

Genomic Coordinates Reverse (-)

35088186 .. 35090733

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG278200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGACCCAGCTGCTAGTGACCATTCGATTCATAGCTCCAGAATTGAGCATGTGTTGTCTCCGGCGACCGCGGATGGGAAGCGGGTGGTTCATGATGAACTGGACTTCTTCGCTGATCATCACAAGGGTTGTCTGAAAGAAACAGATCAAACCCTTGAAGTTAAAGAAGACATGGCTCATGAAAACCATCTAGATACTGGTTTAAATCTTCTAACCACATATACGAGTACCAGCGATAAATCATCTACGGATGATGGATCAACATCCCATAGCATGGAAGATCACAAACAAACAATAAGTGAGCTAGAAGTTGTTCAAGCTGAATTGGGGCGTATGAACGTAGAGAATCAACGGTTGAGAGTTATGATTACTCAGGTGAACAACAATTACAAGAGCTTGCAAGTGCATCTCGTGGAATTCATGCAACGCCAGCAAAATCAATCAGTACAGCAACACAAGATGGTCATAAATGGATCAGCACCAGAAGAGAAGCAGATAATGAACAATATTGTTCCTAGACAATTTATGGATATGGGCAGGGCTGCAAATATCACTCATCATGAGAAAAATGAGCTTGTTTCACACTCTTCATTGGATATGATTAGATCTAATAACGATTGTTCTCTTTCTCCTCCCATCGTTGAGTCAATGGATCACTGCAAGAGTACAGTTCATAGGGGCAGTAAAAGAACTTCTGCGGGTGCTGAAGATAGCCCGGAACGACAAGAATTTCAAGCTGGGAGTCCTGGTTGGGTTCCTAAGAAAATTCCCAAGTTGAATTCCGGCGACGCTGACGTTGATCATCAGGCCTCTGAAGAAACCATGTCCATGATCAAGAAAGCTCGTGTTTCTGTTCGAGCACGATCTGAAGCTTCCATGATATCTGATGGATGCCAATGGAGAAAGTATGGTCAGAAAATGGCTAAAGGGAACCCTTGCCCTAGGGCTTATTATCGTTGTACCATGGGAACTGGTTGCCCAGTTCGAAAACAGGTACAAAGATGTGCAGAAGACAAAACCATACTCATAACTACTTACGAAGGGCAACACAACCACCCGCTCCCACCTACTGCAATGGCTATGGCATCTACTACATCAGCAGCAGCATCAATGCTACTCTCCGGCTCAATGCCCAGTGCTGATCATCATCCTCACCATGCCCTAATAAACTCATCATCAAACACTTTCTTACAGAGAACAGCTATTCATCATCCACAGCTTCCAAATTGCCCACCAAGCTTTGCAACTCTTTCAGCTTCAGCCCCGTTTCCCACGGTTACATTGGACCTCACTCGCTCTCCAGCTACTTCATCAGAGACTATGGCACTGAACCAATTACCAAATTTTTCTCAAAACATGCCTCTGCCACATGCTTTAGGCCAAGCCCTTTGCAACAACGAATCAAAACTTTCCCTTCTTGATGGCTTTCGGGGATTGGACGCTACTTCAAATCACTCAATCCTGGCTGACAAAGTGAGTGCAGCGACGGCAGCCATCACAGCTGATCCTAATTTCACAGCAGCTCTAGTGGCAGCCATCACCTCTATCATTGGTAATAATGTTCATTCAAACAACAATACCAACAGTTCCAACATTACTACAAGAAACAGCAGTGATGACAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010036 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042493 GO:0042594 GO:0044212 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071496 GO:0080029 GO:0080090 GO:0080169 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

542

Amino Acids

59.24

Weight (kDa)

6.28

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	296 - 353	1.8e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23150
malus_domestica	MD03G1197600.v1.1 MD11G1213500.v1.1
prunus_persica	Prupe.4G217900_v2.0.a1
pyrus_communis	pycom03g14910 pycom11g18810 pycom12g06880
rosa_chinensis	RchiOBHm_Chr5g0040801
rosa_laevigata	RLG00000034002
rosa_multiflora	Rmu_sc0001579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039900
rosa_rugosa	Rorug05G0187400 Rorug05G0187500
rosa_samantha	Rh5AG273100 Rh5BG278200 Rh5CG310200 Rh5DG286100
rosa_wichuraiana	Rw5G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	1060
AccII	CGCG	1 cut(s)	71
AciI	CCGC	5 cut(s)	69, 71, 82, 698, 1058
AclWI	GGATC	4 cut(s)	265, 481, 660, 1499
AcsI	RAATTY	5 cut(s)	416, 728, 765, 778, 1342
AcuI	CTGAAG	4 cut(s)	726, 834, 888, 1242
AfaI	GTAC	5 cut(s)	229, 447, 667, 961, 996
AfiI	CCNNNNNNNGG	2 cut(s)	75, 274
AgsI	TTSAA	6 cut(s)	158, 317, 734, 778, 1449, 1569
AjnI	CCWGG	2 cut(s)	745, 1461
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	2 cut(s)	63, 1310
AlwI	GGATC	4 cut(s)	265, 481, 660, 1499
AoxI	GGCC	2 cut(s)	807, 1378
ApeKI	GCWGC	8 cut(s)	11, 542, 1100, 1103, 1481, 1490, 1520, 1532
ApoI	RAATTY	5 cut(s)	416, 728, 765, 778, 1342
Asp700I	GAANNNNTTC	1 cut(s)	312
AspA2I	CCTAGG	1 cut(s)	941
AspS9I	GGNCC	2 cut(s)	4, 1285
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	3 cut(s)	388, 1145, 1531
AsuII	TTCGAA	1 cut(s)	985
AvaII	GGWCC	2 cut(s)	4, 1285
AvrII	CCTAGG	1 cut(s)	941
BarI	GAAGNNNNNNTAC	2 cut(s)	676, 708
BauI	CACGAG	2 cut(s)	410, 843
BbsI	GAAGAC	2 cut(s)	174, 1017
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	7 cut(s)	529, 1112, 1115, 1493, 1502, 1532, 1544
BccI	CCATC	9 cut(s)	68, 195, 248, 454, 644, 881, 1415, 1502, 1544
BceAI	ACGGC	1 cut(s)	1503
BciT130I	CCWGG	2 cut(s)	747, 1463
BclI	TGATCA	4 cut(s)	115, 799, 831, 1141
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	63, 1310
BfaI	CTAG	6 cut(s)	15, 191, 305, 516, 942, 1526
BglII	AGATCT	1 cut(s)	605
BisI	GCNGC	8 cut(s)	12, 543, 1101, 1104, 1482, 1491, 1521, 1533
BlnI	CCTAGG	1 cut(s)	941
BlsI	GCNGC	8 cut(s)	13, 544, 1102, 1105, 1483, 1492, 1522, 1534
Bme1390I	CCNGG	3 cut(s)	716, 747, 1463
Bme18I	GGWCC	2 cut(s)	4, 1285
BmgT120I	GGNCC	2 cut(s)	4, 1285
BmiI	GGNNCC	3 cut(s)	6, 756, 932
BmrFI	CCNGG	3 cut(s)	716, 747, 1463
BmrI	ACTGGG	2 cut(s)	974, 1128
BmsI	GCATC	4 cut(s)	415, 881, 1094, 1115
BmuI	ACTGGG	2 cut(s)	974, 1128
BpiI	GAAGAC	2 cut(s)	174, 1017
BpmI	CTGGAG	2 cut(s)	22, 1284
Bpu14I	TTCGAA	1 cut(s)	985
BpuMI	CCSGG	1 cut(s)	716
BsaBI	GATNNNNATC	2 cut(s)	262, 1146
BsaJI	CCNNGG	4 cut(s)	69, 941, 963, 1272
BsaXI	ACNNNNNCTCC	4 cut(s)	733, 763, 1282, 1312
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 274
Bse1I	ACTGG	5 cut(s)	105, 202, 976, 980, 1134
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	2 cut(s)	262, 1146
BseBI	CCWGG	2 cut(s)	747, 1463
BseDI	CCNNGG	4 cut(s)	69, 941, 963, 1272
BseGI	GGATG	6 cut(s)	79, 256, 263, 896, 1147, 1210
BseJI	GATNNNNATC	2 cut(s)	262, 1146
BseLI	CCNNNNNNNGG	2 cut(s)	75, 274
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	5 cut(s)	105, 202, 976, 980, 1134
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	7 cut(s)	529, 1112, 1115, 1493, 1502, 1532, 1544
BseYI	CCCAGC	2 cut(s)	7, 737
BsgI	GTGCAG	2 cut(s)	1026, 1500
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	809, 1380
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	4 cut(s)	62, 716, 783, 1122
BslI	CCNNNNNNNGG	2 cut(s)	75, 274
BsmAI	GTCTC	2 cut(s)	63, 1310
BsnI	GGCC	2 cut(s)	809, 1380
Bsp119I	TTCGAA	1 cut(s)	985
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	5 cut(s)	69, 71, 82, 698, 1058
BspANI	GGCC	2 cut(s)	809, 1380
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	3 cut(s)	91, 178, 559
BspLI	GGNNCC	3 cut(s)	6, 756, 932
BspPI	GGATC	4 cut(s)	265, 481, 660, 1499
BspT104I	TTCGAA	1 cut(s)	985
BsrBI	CCGCTC	1 cut(s)	1060
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	5 cut(s)	105, 202, 976, 980, 1134
BssECI	CCNNGG	4 cut(s)	69, 941, 963, 1272
BssSI	CACGAG	2 cut(s)	410, 843
BssT1I	CCWWGG	2 cut(s)	941, 963
Bst2BI	CACGAG	2 cut(s)	410, 843
Bst2UI	CCWGG	2 cut(s)	747, 1463
Bst4CI	ACNGT	4 cut(s)	354, 670, 1276, 1586
Bst6I	CTCTTC	2 cut(s)	480, 592
BstBI	TTCGAA	1 cut(s)	985
BstC8I	GCNNGC	2 cut(s)	398, 431
BstDEI	CTNAG	2 cut(s)	372, 759
BstDSI	CCRYGG	3 cut(s)	69, 963, 1272
BstF5I	GGATG	6 cut(s)	79, 256, 263, 896, 1147, 1210
BstFNI	CGCG	1 cut(s)	71
BstMAI	GTCTC	2 cut(s)	63, 1310
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	6 cut(s)	430, 1236, 1487, 1490, 1499, 1529
BstNI	CCWGG	2 cut(s)	747, 1463
BstNSI	RCATGY	3 cut(s)	53, 1360, 1373
BstSCI	CCNGG	3 cut(s)	714, 745, 1461
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	7 cut(s)	529, 1112, 1115, 1493, 1502, 1532, 1544
BstV2I	GAAGAC	2 cut(s)	174, 1017
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	2 cut(s)	809, 1380
BtgI	CCRYGG	3 cut(s)	69, 963, 1272
BtsCI	GGATG	6 cut(s)	79, 256, 263, 896, 1147, 1210
BtsI	GCAGTG	2 cut(s)	655, 1618
BtsIMutI	CAGTG	4 cut(s)	655, 1141, 1325, 1618
Cac8I	GCNNGC	2 cut(s)	398, 431
CciI	TCATGA	3 cut(s)	91, 178, 559
Cfr13I	GGNCC	2 cut(s)	4, 1285
Cfr42I	CCGCGG	1 cut(s)	72
CseI	GACGC	2 cut(s)	797, 1448
Csp6I	GTAC	5 cut(s)	228, 446, 666, 960, 995
CviQI	GTAC	5 cut(s)	228, 446, 666, 960, 995
DdeI	CTNAG	2 cut(s)	372, 759
DraI	TTTAAA	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	480, 592
EarI	CTCTTC	2 cut(s)	480, 592
Eco130I	CCWWGG	2 cut(s)	941, 963
Eco147I	AGGCCT	1 cut(s)	809
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	2 cut(s)	4, 1285
Eco57I	CTGAAG	4 cut(s)	726, 834, 888, 1242
EcoRI	GAATTC	2 cut(s)	416, 778
EcoRII	CCWGG	2 cut(s)	745, 1461
EcoRV	GATATC	1 cut(s)	882
EcoT14I	CCWWGG	2 cut(s)	941, 963
ErhI	CCWWGG	2 cut(s)	941, 963
FauI	CCCGC	3 cut(s)	75, 691, 1065
FbaI	TGATCA	4 cut(s)	115, 799, 831, 1141
Fnu4HI	GCNGC	8 cut(s)	12, 543, 1101, 1104, 1482, 1491, 1521, 1533
FokI	GGATG	6 cut(s)	86, 250, 263, 903, 1134, 1197
Fsp4HI	GCNGC	8 cut(s)	12, 543, 1101, 1104, 1482, 1491, 1521, 1533
FspBI	CTAG	6 cut(s)	15, 191, 305, 516, 942, 1526
GluI	GCNGC	8 cut(s)	12, 543, 1101, 1104, 1482, 1491, 1521, 1533
GsaI	CCCAGC	2 cut(s)	11, 741
GsuI	CTGGAG	2 cut(s)	22, 1284
HaeIII	GGCC	2 cut(s)	809, 1380
HapII	CCGG	4 cut(s)	62, 716, 783, 1122
HgaI	GACGC	2 cut(s)	797, 1448
HindIII	AAGCTT	2 cut(s)	870, 1237
HinfI	GANTC	5 cut(s)	28, 346, 644, 742, 1400
HpaII	CCGG	4 cut(s)	62, 716, 783, 1122
HphI	GGTGA	3 cut(s)	388, 1145, 1531
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	6 cut(s)	135, 814, 868, 886, 915, 1315
Hpy188III	TCNNGA	7 cut(s)	39, 92, 179, 191, 560, 835, 1418
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	2 cut(s)	791, 1489
HpyAV	CCTTC	2 cut(s)	1034, 1424
HpyCH4III	ACNGT	4 cut(s)	354, 670, 1276, 1586
HpyCH4IV	ACGT	2 cut(s)	339, 795
HpyF10VI	GCNNNNNNNGC	6 cut(s)	430, 1236, 1487, 1490, 1499, 1529
HpyF3I	CTNAG	2 cut(s)	372, 759
HpySE526I	ACGT	2 cut(s)	339, 795
Ksp22I	TGATCA	4 cut(s)	115, 799, 831, 1141
KspI	CCGCGG	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	41, 1065
Lsp1109I	GCAGC	7 cut(s)	529, 1112, 1115, 1493, 1502, 1532, 1544
LweI	GCATC	4 cut(s)	415, 881, 1094, 1115
MaeI	CTAG	6 cut(s)	15, 191, 305, 516, 942, 1526
MaeII	ACGT	2 cut(s)	339, 795
MaeIII	GTNAC	2 cut(s)	17, 1276
MbiI	CCGCTC	1 cut(s)	1060
MboII	GAAGA	9 cut(s)	100, 179, 200, 290, 497, 579, 719, 827, 1022
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	1 cut(s)	862
MlyI	GAGTC	2 cut(s)	653, 751
MmeI	TCCRAC	1 cut(s)	1614
MnlI	CCTC	6 cut(s)	642, 820, 1161, 1298, 1371, 1552
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	162, 203
MslI	CAYNNNNRTG	1 cut(s)	827
MspA1I	CMGCKG	3 cut(s)	11, 71, 1502
MspI	CCGG	4 cut(s)	62, 716, 783, 1122
MspR9I	CCNGG	3 cut(s)	716, 747, 1463
MvaI	CCWGG	2 cut(s)	747, 1463
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	6 cut(s)	430, 1236, 1487, 1490, 1499, 1529
NciI	CCSGG	1 cut(s)	716
NcoI	CCATGG	1 cut(s)	963
NlaIV	GGNNCC	3 cut(s)	6, 756, 932
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	3 cut(s)	53, 1360, 1373
NspV	TTCGAA	1 cut(s)	985
PagI	TCATGA	3 cut(s)	91, 178, 559
PceI	AGGCCT	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	28, 346, 1400
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	8 cut(s)	13, 544, 1102, 1105, 1483, 1492, 1522, 1534
PleI	GAGTC	2 cut(s)	652, 750
PpsI	GAGTC	2 cut(s)	652, 750
Psp6I	CCWGG	2 cut(s)	745, 1461
PspFI	CCCAGC	2 cut(s)	7, 737
PspGI	CCWGG	2 cut(s)	745, 1461
PspN4I	GGNNCC	3 cut(s)	6, 756, 932
PspPI	GGNCC	2 cut(s)	4, 1285
PsrI	GAACNNNNNNTAC	2 cut(s)	371, 403
PsuI	RGATCY	1 cut(s)	605
PvuII	CAGCTG	2 cut(s)	11, 1502
RsaI	GTAC	5 cut(s)	229, 447, 667, 961, 996
RsaNI	GTAC	5 cut(s)	228, 446, 666, 960, 995
RseI	CAYNNNNRTG	1 cut(s)	827
SacII	CCGCGG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	162, 203
SatI	GCNGC	8 cut(s)	12, 543, 1101, 1104, 1482, 1491, 1521, 1533
Sau96I	GGNCC	2 cut(s)	4, 1285
SchI	GAGTC	2 cut(s)	653, 751
ScrFI	CCNGG	3 cut(s)	716, 747, 1463
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	4 cut(s)	415, 881, 1094, 1115
Sfr303I	CCGCGG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	985
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	4, 1285
SmiMI	CAYNNNNRTG	1 cut(s)	827
SseBI	AGGCCT	1 cut(s)	809
SsiI	CCGC	5 cut(s)	69, 71, 82, 698, 1058
SspI	AATATT	1 cut(s)	508
SspMI	CTAG	6 cut(s)	15, 191, 305, 516, 942, 1526
StuI	AGGCCT	1 cut(s)	809
StyD4I	CCNGG	3 cut(s)	714, 745, 1461
StyI	CCWWGG	2 cut(s)	941, 963
TaaI	ACNGT	4 cut(s)	354, 670, 1276, 1586
TaiI	ACGT	2 cut(s)	342, 798
TaqI	TCGA	3 cut(s)	26, 856, 985
TatI	WGTACW	2 cut(s)	445, 665
TfiI	GAWTC	3 cut(s)	28, 346, 1400
Tru1I	TTAA	2 cut(s)	162, 203
Tru9I	TTAA	2 cut(s)	162, 203
TscAI	CASTG	4 cut(s)	662, 1141, 1332, 1618
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	8 cut(s)	11, 542, 1100, 1103, 1481, 1490, 1520, 1532
Tsp45I	GTSAC	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	4 cut(s)	662, 1141, 1332, 1618
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	4, 1285
XapI	RAATTY	5 cut(s)	416, 728, 765, 778, 1342
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	3 cut(s)	53, 1360, 1373
XcmI	CCANNNNNNNNNTGG	2 cut(s)	194, 1279
XmaJI	CCTAGG	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	6 cut(s)	15, 191, 305, 516, 942, 1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.