RLG00000034002
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
35223528 .. 35226063
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034002

Sequence Viewer

Length: 1626 bp
ATGGACCCAGCTGCTAGTGACCATTCGATTCATGGCTCCAGAATTGAGCATGTGTTGTCTCCGGCGACCGCGGATGGGAAGCGGGTGGTTCATGATGAACTGGACTTCTTTGCTGATCATCACAAGGGTTGTCTGAAAGAAACAGATCAAACCGTTGAAGTTAAAGAAGACATGGCTCATGAAAACCATCTAGATACTGGTTTAAATCTTCTAACCACATATACGAGTACCAGCGATAAATCATCTACGGATGATGGATCAACATCCCATAGCATGGAAGATCACAAACAAACAATAAGTGAGCTAGAAGTTGTTCAAGCTGAATTGGGGCGTATGAACGTAGAGAATCAACGGTTGAGAGTTATGATTACTCAGGTGAACAACAATTACAAGAGCTTGCAAGTGCATCTCGTGGAATTCATGCAACGCCAGCAAAATCAATCAGTACAACAACACAAGATGGTCATAAATGGATCAGCACCAGAAGAGAAGCAGATAATGAACAATATTGTTCCTAGACAATTTATGGATATGGGCAGGGCTGCAAATATCACTCATCATGAGAAAAATGAGCTTGTTTCACACTCTTCATTGGATACGGTTAGATCTAATAACGATTGTTCTCTTTCTCCTCCCATCGTTGAGTCAATGGATCACTGCAAGAGTACAGTTCATAGGGGCAGTAAAAGAACTGCGGGTGCTGAAGATAGCCCGGAACGACAAGAATTTCAAGCTGGGAGTCCTGGTTGGGTTCCTAAGAAAATTCCCAAGTTGAATTCCGGAGACGCTGACGTTGATCATCAGGCCTCTGATGAAACCATGTCCATGATTAAGAAAGCTCGTGTTTCTGTTCGAGCACGATCTGAAGCTTCCATGATATCTGATGGATGCCAATGGAGAAAGTATGGTCAGAAAATGGCTAAAGGGAACCCTTGCCCTAGGGCTTATTATCGTTGTACCATGGGAACTGGTTGCCCAGTTCGAAAACAGGTACAAAGATGTGCAGAAGACAAAACCATACTCATAACTACTTACGAAGGGCAACACAACCACCCGCTCCCACCTACTGCAATGGCTATGGCATCTACTACATCAGCAGCAGCATCAATGCTACTCTCCGGCTCAATGCCTAGTGCTGATCATCATCCTCACCATGCCCTAATAAACTCATCATCAAACACTTTCTTACAGAGAACCGCTTTTCATCATCCACAGCTACCAAATTGCCCACCAAGCTTTGCAACTCTTTCAGCTTCAGCCCCGTTTCCCACAGTTACATTGGACCTCACTCGCTCTCCAGCTACTTCATCAGAGACTATGGCACTGAACCAATTACCAAATTTTTCTCAAAACATGCCTCTGCCACTTGCTTTAGGCCAAGCCCTTTGCAACAACGAATCAAAACTTTCCCTTCTCGATGGCTTTCGGGGACTGGACGCTACTACAAGTCACTCAATCCTGGCTGACAAAGTGAGTGCAGCTACGGCAGCCATCACAGCTGATCCTAATTTCACAGCAGCTCTAGTGGCAGCCATCACCTCTATCATTGGGAATAATGTTCATTCAAACAATAATACCAACAGTTCCAACATTACTACAAGAAACAGCAGTGATGACAATACATGA

Protein Analysis

542

Amino Acids

59.05

Weight (kDa)

6.26

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 295 - 352 1.8e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013643)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 1057
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 779
AciI CCGC 6 cut(s) 69, 71, 82, 695, 1055, 1197
AclWI GGATC 4 cut(s) 265, 481, 660, 1496
AcsI RAATTY 5 cut(s) 416, 725, 762, 775, 1339
AcuI CTGAAG 3 cut(s) 723, 885, 1239
AfaI GTAC 5 cut(s) 229, 447, 667, 958, 993
AfiI CCNNNNNNNGG 2 cut(s) 75, 274
AgsI TTSAA 5 cut(s) 158, 317, 731, 775, 1566
AjnI CCWGG 2 cut(s) 742, 1458
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 3 cut(s) 63, 777, 1307
AlwI GGATC 4 cut(s) 265, 481, 660, 1496
Aor13HI TCCGGA 1 cut(s) 779
AoxI GGCC 2 cut(s) 804, 1375
ApeKI GCWGC 8 cut(s) 11, 542, 1097, 1100, 1478, 1487, 1517, 1529
ApoI RAATTY 5 cut(s) 416, 725, 762, 775, 1339
Asp700I GAANNNNTTC 1 cut(s) 312
AspA2I CCTAGG 1 cut(s) 938
AspS9I GGNCC 2 cut(s) 4, 1282
AsuC2I CCSGG 1 cut(s) 713
AsuHPI GGTGA 3 cut(s) 388, 1142, 1528
AsuII TTCGAA 1 cut(s) 982
AvaII GGWCC 2 cut(s) 4, 1282
AvrII CCTAGG 1 cut(s) 938
BauI CACGAG 2 cut(s) 410, 840
BbsI GAAGAC 2 cut(s) 174, 1014
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 7 cut(s) 529, 1109, 1112, 1490, 1499, 1529, 1541
BccI CCATC 9 cut(s) 68, 195, 248, 454, 644, 878, 1412, 1499, 1541
BceAI ACGGC 1 cut(s) 1500
BciT130I CCWGG 2 cut(s) 744, 1460
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 3 cut(s) 115, 796, 1138
BcnI CCSGG 1 cut(s) 713
BcoDI GTCTC 3 cut(s) 63, 777, 1307
BfaI CTAG 7 cut(s) 15, 191, 305, 516, 939, 1131, 1523
BfuI GTATCC 1 cut(s) 589
BglII AGATCT 1 cut(s) 605
BisI GCNGC 8 cut(s) 12, 543, 1098, 1101, 1479, 1488, 1518, 1530
BlnI CCTAGG 1 cut(s) 938
BlsI GCNGC 8 cut(s) 13, 544, 1099, 1102, 1480, 1489, 1519, 1531
Bme1390I CCNGG 3 cut(s) 713, 744, 1460
Bme18I GGWCC 2 cut(s) 4, 1282
BmgT120I GGNCC 2 cut(s) 4, 1282
BmiI GGNNCC 4 cut(s) 6, 37, 753, 929
BmrFI CCNGG 3 cut(s) 713, 744, 1460
BmrI ACTGGG 1 cut(s) 971
BmsI GCATC 4 cut(s) 415, 878, 1091, 1112
BmuI ACTGGG 1 cut(s) 971
BpiI GAAGAC 2 cut(s) 174, 1014
BpmI CTGGAG 2 cut(s) 22, 1281
Bpu14I TTCGAA 1 cut(s) 982
BpuMI CCSGG 1 cut(s) 713
BsaBI GATNNNNATC 2 cut(s) 262, 1143
BsaJI CCNNGG 3 cut(s) 69, 938, 960
BsaWI WCCGGW 1 cut(s) 779
BsaXI ACNNNNNCTCC 4 cut(s) 730, 760, 1279, 1309
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 274
Bse1I ACTGG 5 cut(s) 105, 202, 973, 977, 1437
Bse3DI GCAATG 1 cut(s) 1077
Bse8I GATNNNNATC 2 cut(s) 262, 1143
BseAI TCCGGA 1 cut(s) 779
BseBI CCWGG 2 cut(s) 744, 1460
BseDI CCNNGG 3 cut(s) 69, 938, 960
BseGI GGATG 6 cut(s) 79, 256, 263, 893, 1144, 1207
BseJI GATNNNNATC 2 cut(s) 262, 1143
BseLI CCNNNNNNNGG 2 cut(s) 75, 274
BseMI GCAATG 1 cut(s) 1077
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 5 cut(s) 105, 202, 973, 977, 1437
BseRI GAGGAG 1 cut(s) 621
BseXI GCAGC 7 cut(s) 529, 1109, 1112, 1490, 1499, 1529, 1541
BseYI CCCAGC 2 cut(s) 7, 734
BsgI GTGCAG 2 cut(s) 1023, 1497
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 806, 1377
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 4 cut(s) 62, 713, 780, 1119
BslFI GGGAC 1 cut(s) 1443
BslI CCNNNNNNNGG 2 cut(s) 75, 274
BsmAI GTCTC 3 cut(s) 63, 777, 1307
BsmBI CGTCTC 1 cut(s) 777
BsmFI GGGAC 1 cut(s) 1443
BsnI GGCC 2 cut(s) 806, 1377
Bsp119I TTCGAA 1 cut(s) 982
Bsp1286I GDGCHC 1 cut(s) 859
Bsp13I TCCGGA 1 cut(s) 779
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 6 cut(s) 69, 71, 82, 695, 1055, 1197
BspANI GGCC 2 cut(s) 806, 1377
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 779
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 3 cut(s) 91, 178, 559
BspLI GGNNCC 4 cut(s) 6, 37, 753, 929
BspPI GGATC 4 cut(s) 265, 481, 660, 1496
BspT104I TTCGAA 1 cut(s) 982
BsrBI CCGCTC 1 cut(s) 1057
BsrDI GCAATG 1 cut(s) 1077
BsrI ACTGG 5 cut(s) 105, 202, 973, 977, 1437
BssECI CCNNGG 3 cut(s) 69, 938, 960
BssSI CACGAG 2 cut(s) 410, 840
BssT1I CCWWGG 2 cut(s) 938, 960
Bst2BI CACGAG 2 cut(s) 410, 840
Bst2UI CCWGG 2 cut(s) 744, 1460
Bst4CI ACNGT 6 cut(s) 154, 354, 601, 670, 1273, 1583
Bst6I CTCTTC 2 cut(s) 480, 592
BstBI TTCGAA 1 cut(s) 982
BstC8I GCNNGC 2 cut(s) 398, 431
BstDEI CTNAG 2 cut(s) 372, 756
BstDSI CCRYGG 2 cut(s) 69, 960
BstF5I GGATG 6 cut(s) 79, 256, 263, 893, 1144, 1207
BstFNI CGCG 1 cut(s) 71
BstMAI GTCTC 3 cut(s) 63, 777, 1307
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 430, 1233, 1484, 1487, 1496, 1526
BstNI CCWGG 2 cut(s) 744, 1460
BstNSI RCATGY 2 cut(s) 53, 1357
BstSCI CCNGG 3 cut(s) 711, 742, 1458
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 7 cut(s) 529, 1109, 1112, 1490, 1499, 1529, 1541
BstV2I GAAGAC 2 cut(s) 174, 1014
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 806, 1377
BtgI CCRYGG 2 cut(s) 69, 960
BtsCI GGATG 6 cut(s) 79, 256, 263, 893, 1144, 1207
BtsI GCAGTG 2 cut(s) 655, 1615
BtsIMutI CAGTG 3 cut(s) 655, 1322, 1615
Cac8I GCNNGC 2 cut(s) 398, 431
CciI TCATGA 3 cut(s) 91, 178, 559
Cfr13I GGNCC 2 cut(s) 4, 1282
Cfr42I CCGCGG 1 cut(s) 72
CseI GACGC 2 cut(s) 794, 1445
Csp6I GTAC 5 cut(s) 228, 446, 666, 957, 992
CviQI GTAC 5 cut(s) 228, 446, 666, 957, 992
DdeI CTNAG 2 cut(s) 372, 756
DraI TTTAAA 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 480, 592
EarI CTCTTC 2 cut(s) 480, 592
Eco130I CCWWGG 2 cut(s) 938, 960
Eco147I AGGCCT 1 cut(s) 806
Eco32I GATATC 1 cut(s) 879
Eco47I GGWCC 2 cut(s) 4, 1282
Eco57I CTGAAG 3 cut(s) 723, 885, 1239
EcoRI GAATTC 2 cut(s) 416, 775
EcoRII CCWGG 2 cut(s) 742, 1458
EcoRV GATATC 1 cut(s) 879
EcoT14I CCWWGG 2 cut(s) 938, 960
ErhI CCWWGG 2 cut(s) 938, 960
Esp3I CGTCTC 1 cut(s) 777
FaqI GGGAC 1 cut(s) 1443
FauI CCCGC 3 cut(s) 75, 688, 1062
FbaI TGATCA 3 cut(s) 115, 796, 1138
Fnu4HI GCNGC 8 cut(s) 12, 543, 1098, 1101, 1479, 1488, 1518, 1530
FokI GGATG 6 cut(s) 86, 250, 263, 900, 1131, 1194
Fsp4HI GCNGC 8 cut(s) 12, 543, 1098, 1101, 1479, 1488, 1518, 1530
FspBI CTAG 7 cut(s) 15, 191, 305, 516, 939, 1131, 1523
GluI GCNGC 8 cut(s) 12, 543, 1098, 1101, 1479, 1488, 1518, 1530
GsaI CCCAGC 2 cut(s) 11, 738
GsuI CTGGAG 2 cut(s) 22, 1281
HaeIII GGCC 2 cut(s) 806, 1377
HapII CCGG 4 cut(s) 62, 713, 780, 1119
HgaI GACGC 2 cut(s) 794, 1445
HindIII AAGCTT 2 cut(s) 867, 1234
HinfI GANTC 5 cut(s) 28, 346, 644, 739, 1397
HpaII CCGG 4 cut(s) 62, 713, 780, 1119
HphI GGTGA 3 cut(s) 388, 1142, 1528
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 6 cut(s) 135, 811, 865, 883, 912, 1312
Hpy188III TCNNGA 7 cut(s) 39, 92, 179, 191, 560, 780, 1415
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 1031, 1421
HpyCH4III ACNGT 6 cut(s) 154, 354, 601, 670, 1273, 1583
HpyCH4IV ACGT 2 cut(s) 339, 792
HpyF10VI GCNNNNNNNGC 6 cut(s) 430, 1233, 1484, 1487, 1496, 1526
HpyF3I CTNAG 2 cut(s) 372, 756
HpySE526I ACGT 2 cut(s) 339, 792
Kpn2I TCCGGA 1 cut(s) 779
Ksp22I TGATCA 3 cut(s) 115, 796, 1138
KspI CCGCGG 1 cut(s) 72
LmnI GCTCC 2 cut(s) 41, 1062
Lsp1109I GCAGC 7 cut(s) 529, 1109, 1112, 1490, 1499, 1529, 1541
LweI GCATC 4 cut(s) 415, 878, 1091, 1112
MaeI CTAG 7 cut(s) 15, 191, 305, 516, 939, 1131, 1523
MaeII ACGT 2 cut(s) 339, 792
MaeIII GTNAC 3 cut(s) 17, 1273, 1448
MbiI CCGCTC 1 cut(s) 1057
MboII GAAGA 7 cut(s) 179, 200, 290, 497, 579, 716, 1019
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 859
MlyI GAGTC 2 cut(s) 653, 748
MmeI TCCRAC 1 cut(s) 1611
MnlI CCTC 6 cut(s) 642, 817, 1158, 1295, 1368, 1549
MroI TCCGGA 1 cut(s) 779
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 3 cut(s) 162, 203, 831
MslI CAYNNNNRTG 1 cut(s) 824
MspA1I CMGCKG 3 cut(s) 11, 71, 1499
MspI CCGG 4 cut(s) 62, 713, 780, 1119
MspR9I CCNGG 3 cut(s) 713, 744, 1460
MvaI CCWGG 2 cut(s) 744, 1460
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 6 cut(s) 430, 1233, 1484, 1487, 1496, 1526
NciI CCSGG 1 cut(s) 713
NcoI CCATGG 1 cut(s) 960
NlaIV GGNNCC 4 cut(s) 6, 37, 753, 929
NmuCI GTSAC 2 cut(s) 17, 1448
NspI RCATGY 2 cut(s) 53, 1357
NspV TTCGAA 1 cut(s) 982
PagI TCATGA 3 cut(s) 91, 178, 559
PceI AGGCCT 1 cut(s) 806
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 28, 346, 1397
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 8 cut(s) 13, 544, 1099, 1102, 1480, 1489, 1519, 1531
PleI GAGTC 2 cut(s) 652, 747
PpsI GAGTC 2 cut(s) 652, 747
Psp6I CCWGG 2 cut(s) 742, 1458
PspFI CCCAGC 2 cut(s) 7, 734
PspGI CCWGG 2 cut(s) 742, 1458
PspN4I GGNNCC 4 cut(s) 6, 37, 753, 929
PspPI GGNCC 2 cut(s) 4, 1282
PsrI GAACNNNNNNTAC 2 cut(s) 371, 403
PsuI RGATCY 1 cut(s) 605
PvuII CAGCTG 2 cut(s) 11, 1499
RsaI GTAC 5 cut(s) 229, 447, 667, 958, 993
RsaNI GTAC 5 cut(s) 228, 446, 666, 957, 992
RseI CAYNNNNRTG 1 cut(s) 824
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 3 cut(s) 162, 203, 831
SatI GCNGC 8 cut(s) 12, 543, 1098, 1101, 1479, 1488, 1518, 1530
Sau96I GGNCC 2 cut(s) 4, 1282
SchI GAGTC 2 cut(s) 653, 748
ScrFI CCNGG 3 cut(s) 713, 744, 1460
SduI GDGCHC 1 cut(s) 859
SfaNI GCATC 4 cut(s) 415, 878, 1091, 1112
Sfr303I CCGCGG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 982
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 2 cut(s) 4, 1282
SmiMI CAYNNNNRTG 1 cut(s) 824
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 6 cut(s) 69, 71, 82, 695, 1055, 1197
SspI AATATT 1 cut(s) 508
SspMI CTAG 7 cut(s) 15, 191, 305, 516, 939, 1131, 1523
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 3 cut(s) 711, 742, 1458
StyI CCWWGG 2 cut(s) 938, 960
TaaI ACNGT 6 cut(s) 154, 354, 601, 670, 1273, 1583
TaiI ACGT 2 cut(s) 342, 795
TaqI TCGA 4 cut(s) 26, 853, 982, 1416
TatI WGTACW 2 cut(s) 445, 665
TfiI GAWTC 3 cut(s) 28, 346, 1397
Tru1I TTAA 3 cut(s) 162, 203, 831
Tru9I TTAA 3 cut(s) 162, 203, 831
TscAI CASTG 3 cut(s) 662, 1329, 1615
TseFI GTSAC 2 cut(s) 17, 1448
TseI GCWGC 8 cut(s) 11, 542, 1097, 1100, 1478, 1487, 1517, 1529
Tsp45I GTSAC 2 cut(s) 17, 1448
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 3 cut(s) 662, 1329, 1615
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 4, 1282
XapI RAATTY 5 cut(s) 416, 725, 762, 775, 1339
XbaI TCTAGA 1 cut(s) 190
XceI RCATGY 2 cut(s) 53, 1357
XcmI CCANNNNNNNNNTGG 3 cut(s) 29, 194, 1276
XmaJI CCTAGG 1 cut(s) 938
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 7 cut(s) 15, 191, 305, 516, 939, 1131, 1523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.