FvH4_3g23380

Endoglucanase 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004610
Physical Location & Seq
Reverse (-)
16424847 .. 16427483
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23380.t1

Sequence Viewer

Length: 1494 bp
ATGAAGGAGGACAAGAAGCAAAGTATTGTCCTCCAGAAATGGTGTGTTCTACTCTCCATATTTGCTCTCTTTCCCTTCTCTCAGTCCTTCAACTATAGCGATGCTCTCACCAAGAGTCTCCTCTACTTTGAATCTCAGCGCTCCGGTCGCTTACCTCACAACCAGAGGGTCATTTGGCGTGATCATTCCGGCCTCAACGATGGCATAGAACAAGGAGTGGACTTGGTGGGAGGTTACTATGATGCTGGTGATAATGTGAAATTTGGTTTGCCAATGGCGTTTACTATAACGATGCTTTCTTGGGGTGTCATAGAATACGGCAAAGAGATAACGGATTCCGGCGAGTACAGTCATGCCCTTGAATCTATAAAATGGGGGACAGACTATTTCATAAAAGCTCATACTCATCCAAATGTTTTCTGGGCGGAGGTGGGCGATGGATTCACGGATCACTATTGTTGGCAAAGGCCAGAAGATATGACGACGTCTCGGCAAGCCTACAAGGTCGATGAGAAAAACCCCGGATCAGATATTGCCGGGGAGACTGCCGCAGCAATGGCAGCAGCTGCCATTGTGTTTAGGAAAACAAACCCACATTACTCAGGCCTCCTTTTAGACCATGCAAAACAGTTGTTTGAGTTTGGTGACAAATATAGAGGCAAGTATGATGAGAGCATAAAGGTGGTTAAAGGCCACTATACATCTTGGAGTGGATACATGGATGAGTTGCTCTGGGCAGCTATTTGGTTGTACAAGGCTACAAACAATGAAGATTATTTGAACTATGTTTTGACCAATGCTCAAGCTTTTGGTGGCACCACTTGGTCCATCACAGAGTTTAGCTGGGATGTTAAGTATGCTGGTGTTCAAATCATTGCTTCAATGTTACTCAAGGAAGCAAAGCACAAAAAGCACGAGCACACACTGAAACAGTACCTCTCAAAAGCTGAGTACTACATGTGTTCTTGCCTTGGCAAGAACAACAACACCAACGTGCGACGCACCCCAGGAGGCTTACTGTACATCCGCCAATGGAACAACATGCAATACGTTTCAACTTCTGCATTTCTCCTCACAGTTTACTCTGATCATCTCCAGGCCACTCATCAGAATCTGAACTGCGACAAAGGGCAGGTAGGCCCTGACGAAATGTTAGCTTTTGCCAAGTCACAGGTTGATTACATTTTGGGGTCTAATCCAAGGGGCTTGAGCTACTTGGTTGGGTACGGTCCAAACTACCCTCTGAGGCTGCACCACAGAGGAGCATCCATTGATTCGTATAAGAGGAACAAGGGATTTATTGGGTGCACGCAGGGATATGATAACTGGTATGGAAATAAGGATCCGAACCCGAATGTGGTTGTCGGAGCATTAGTTGGTGGCCCGGATGGAGATGATGGATTCAGGGATGAGAGGTGGAATTACATGCAGACAGAGGCATGTACTTACAATACTGCAACACTGGTTGGGGTTTTTGCTAAGTTGCATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

498

Amino Acids

56.29

Weight (kDa)

6.5

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 32 - 491 1.2e-165 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 1123
AccB1I GGYRCC 1 cut(s) 815
AciI CCGC 3 cut(s) 425, 549, 1027
AclWI GGATC 4 cut(s) 456, 532, 1337, 1350
AcsI RAATTY 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 485
AfaI GTAC 7 cut(s) 347, 752, 935, 953, 1022, 1226, 1444
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 1357
AflIII ACRYGT 1 cut(s) 957
AgsI TTSAA 7 cut(s) 91, 131, 362, 781, 869, 882, 1056
AjnI CCWGG 2 cut(s) 1006, 1095
AleI CACNNNNGTG 1 cut(s) 992
AluBI AGCT 8 cut(s) 398, 566, 740, 806, 843, 947, 1157, 1212
AluI AGCT 8 cut(s) 398, 566, 740, 806, 843, 947, 1157, 1212
Alw21I GWGCWC 2 cut(s) 921, 1310
Alw26I GTCTC 3 cut(s) 122, 492, 536
Alw44I GTGCAC 1 cut(s) 1306
AlwI GGATC 4 cut(s) 456, 532, 1337, 1350
AlwNI CAGNNNCTG 2 cut(s) 566, 1114
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 7 cut(s) 190, 467, 604, 691, 1098, 1138, 1381
ApaLI GTGCAC 1 cut(s) 1306
ApeKI GCWGC 6 cut(s) 551, 560, 563, 566, 737, 1249
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 4 cut(s) 825, 1139, 1229, 1382
AsuC2I CCSGG 3 cut(s) 522, 538, 1385
AsuHPI GGTGA 3 cut(s) 100, 260, 656
AvaII GGWCC 2 cut(s) 825, 1229
BaeGI GKGCMC 1 cut(s) 1310
BamHI GGATCC 1 cut(s) 1342
BanI GGYRCC 1 cut(s) 815
BauI CACGAG 1 cut(s) 914
Bbv12I GWGCWC 2 cut(s) 921, 1310
BbvI GCAGC 6 cut(s) 553, 563, 572, 575, 749, 1236
BccI CCATC 5 cut(s) 194, 431, 836, 1382, 1391
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 2 cut(s) 1008, 1097
BciVI GTATCC 1 cut(s) 707
BclI TGATCA 2 cut(s) 181, 1087
BcnI CCSGG 3 cut(s) 522, 538, 1385
BcoDI GTCTC 3 cut(s) 122, 492, 536
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 1123
BfuI GTATCC 1 cut(s) 707
BisI GCNGC 7 cut(s) 549, 552, 561, 564, 567, 738, 1250
BlsI GCNGC 7 cut(s) 550, 553, 562, 565, 568, 739, 1251
BmcAI AGTACT 1 cut(s) 953
Bme1390I CCNGG 5 cut(s) 522, 538, 1008, 1097, 1385
Bme18I GGWCC 2 cut(s) 825, 1229
BmgT120I GGNCC 4 cut(s) 825, 1139, 1229, 1382
BmiI GGNNCC 2 cut(s) 817, 1344
BmrFI CCNGG 5 cut(s) 522, 538, 1008, 1097, 1385
BmsI GCATC 4 cut(s) 91, 232, 282, 1274
BpmI CTGGAG 2 cut(s) 17, 1079
BpuEI CTTGAG 3 cut(s) 786, 875, 1228
BpuMI CCSGG 3 cut(s) 522, 538, 1385
BsaHI GRCGYC 1 cut(s) 485
BsaJI CCNNGG 5 cut(s) 520, 537, 970, 1006, 1199
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 1359, 1389
Bsc4I CCNNNNNNNGG 1 cut(s) 1357
Bse1I ACTGG 2 cut(s) 1331, 1467
Bse3DI GCAATG 2 cut(s) 561, 873
BseBI CCWGG 2 cut(s) 1008, 1097
BseDI CCNNGG 5 cut(s) 520, 537, 970, 1006, 1199
BseGI GGATG 7 cut(s) 406, 727, 853, 1023, 1265, 1393, 1414
BseLI CCNNNNNNNGG 1 cut(s) 1357
BseMI GCAATG 2 cut(s) 561, 873
BseMII CTCAG 5 cut(s) 95, 149, 615, 939, 1235
BseNI ACTGG 2 cut(s) 1331, 1467
BseRI GAGGAG 3 cut(s) 110, 1061, 1275
BseSI GKGCMC 1 cut(s) 1310
BseXI GCAGC 6 cut(s) 553, 563, 572, 575, 749, 1236
BseYI CCCAGC 1 cut(s) 843
BsgI GTGCAG 1 cut(s) 1235
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 7 cut(s) 192, 469, 606, 693, 1100, 1140, 1383
BshNI GGYRCC 1 cut(s) 815
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 2 cut(s) 921, 1310
BsiSI CCGG 6 cut(s) 144, 189, 339, 522, 537, 1385
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 1357
BsmAI GTCTC 3 cut(s) 122, 492, 536
BsmBI CGTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 7 cut(s) 192, 469, 606, 693, 1100, 1140, 1383
Bsp1286I GDGCHC 2 cut(s) 921, 1310
Bsp1407I TGTACA 2 cut(s) 750, 1020
Bsp143I GATC 5 cut(s) 181, 448, 524, 1087, 1342
BspACI CCGC 3 cut(s) 425, 549, 1027
BspANI GGCC 7 cut(s) 192, 469, 606, 693, 1100, 1140, 1383
BspCNI CTCAG 5 cut(s) 94, 148, 614, 940, 1236
BspLI GGNNCC 2 cut(s) 817, 1344
BspMI ACCTGC 1 cut(s) 1123
BspPI GGATC 4 cut(s) 456, 532, 1337, 1350
BspT107I GGYRCC 1 cut(s) 815
BsrDI GCAATG 2 cut(s) 561, 873
BsrGI TGTACA 2 cut(s) 750, 1020
BsrI ACTGG 2 cut(s) 1331, 1467
BssECI CCNNGG 5 cut(s) 520, 537, 970, 1006, 1199
BssMI GATC 5 cut(s) 181, 448, 524, 1087, 1342
BssNI GRCGYC 1 cut(s) 485
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 2 cut(s) 970, 1199
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 2 cut(s) 1008, 1097
Bst4CI ACNGT 6 cut(s) 350, 630, 933, 1020, 1078, 1229
BstACI GRCGYC 1 cut(s) 485
BstAPI GCANNNNNTGC 1 cut(s) 566
BstAUI TGTACA 2 cut(s) 750, 1020
BstC8I GCNNGC 2 cut(s) 495, 1310
BstDEI CTNAG 6 cut(s) 81, 135, 601, 948, 1244, 1479
BstF5I GGATG 7 cut(s) 406, 727, 853, 1023, 1265, 1393, 1414
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 5 cut(s) 184, 451, 527, 1090, 1345
BstMAI GTCTC 3 cut(s) 122, 492, 536
BstMBI GATC 5 cut(s) 181, 448, 524, 1087, 1342
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 5 cut(s) 147, 557, 560, 566, 910
BstNI CCWGG 2 cut(s) 1008, 1097
BstNSI RCATGY 4 cut(s) 961, 1045, 1429, 1443
BstSCI CCNGG 5 cut(s) 520, 536, 1006, 1095, 1383
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 1310
BstV1I GCAGC 6 cut(s) 553, 563, 572, 575, 749, 1236
BstX2I RGATCY 1 cut(s) 1342
BstYI RGATCY 1 cut(s) 1342
BsuI GTATCC 1 cut(s) 707
BsuRI GGCC 7 cut(s) 192, 469, 606, 693, 1100, 1140, 1383
BtgZI GCGATG 2 cut(s) 114, 450
BtsCI GGATG 7 cut(s) 406, 727, 853, 1023, 1265, 1393, 1414
BtsIMutI CAGTG 2 cut(s) 923, 1460
BveI ACCTGC 1 cut(s) 1123
Cac8I GCNNGC 2 cut(s) 495, 1310
CaiI CAGNNNCTG 2 cut(s) 566, 1114
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 4 cut(s) 825, 1139, 1229, 1382
CseI GACGC 1 cut(s) 1008
Csp6I GTAC 7 cut(s) 346, 751, 934, 952, 1021, 1225, 1443
CviAII CATG 8 cut(s) 353, 620, 718, 958, 1042, 1426, 1440, 1487
CviQI GTAC 7 cut(s) 346, 751, 934, 952, 1021, 1225, 1443
DdeI CTNAG 6 cut(s) 81, 135, 601, 948, 1244, 1479
DpnI GATC 5 cut(s) 183, 450, 526, 1089, 1344
DpnII GATC 5 cut(s) 181, 448, 524, 1087, 1342
EciI GGCGGA 2 cut(s) 440, 1016
Eco130I CCWWGG 2 cut(s) 970, 1199
Eco147I AGGCCT 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 825, 1229
Eco47III AGCGCT 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 1139
EcoRII CCWGG 2 cut(s) 1006, 1095
EcoT14I CCWWGG 2 cut(s) 970, 1199
ErhI CCWWGG 2 cut(s) 970, 1199
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 8 cut(s) 356, 623, 721, 961, 1045, 1429, 1443, 1490
FaqI GGGAC 1 cut(s) 391
FatI CATG 8 cut(s) 352, 619, 717, 957, 1041, 1425, 1439, 1486
FbaI TGATCA 2 cut(s) 181, 1087
Fnu4HI GCNGC 7 cut(s) 549, 552, 561, 564, 567, 738, 1250
FokI GGATG 7 cut(s) 393, 734, 860, 1010, 1252, 1400, 1421
Fsp4HI GCNGC 7 cut(s) 549, 552, 561, 564, 567, 738, 1250
GlaI GCGC 1 cut(s) 140
GluI GCNGC 7 cut(s) 549, 552, 561, 564, 567, 738, 1250
GsaI CCCAGC 1 cut(s) 847
GsuI CTGGAG 2 cut(s) 17, 1079
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 7 cut(s) 192, 469, 606, 693, 1100, 1140, 1383
HapII CCGG 6 cut(s) 144, 189, 339, 522, 537, 1385
HgaI GACGC 1 cut(s) 1008
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 485
Hin1II CATG 8 cut(s) 356, 623, 721, 961, 1045, 1429, 1443, 1490
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 804
HinfI GANTC 8 cut(s) 115, 131, 335, 362, 441, 1111, 1274, 1401
HpaII CCGG 6 cut(s) 144, 189, 339, 522, 537, 1385
HphI GGTGA 3 cut(s) 100, 260, 656
Hpy166II GTNNAC 4 cut(s) 220, 282, 1081, 1308
Hpy188I TCNGA 7 cut(s) 529, 1087, 1110, 1116, 1245, 1347, 1367
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 4 cut(s) 220, 282, 1081, 1308
Hpy99I CGWCG 2 cut(s) 487, 1002
HpyAV CCTTC 2 cut(s) 85, 97
HpyCH4III ACNGT 6 cut(s) 350, 630, 933, 1020, 1078, 1229
HpyCH4IV ACGT 3 cut(s) 485, 993, 1050
HpyCH4V TGCA 8 cut(s) 623, 1045, 1064, 1252, 1308, 1429, 1457, 1486
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 557, 560, 566, 910
HpyF3I CTNAG 6 cut(s) 81, 135, 601, 948, 1244, 1479
HpySE526I ACGT 3 cut(s) 485, 993, 1050
Hsp92I GRCGYC 1 cut(s) 485
Hsp92II CATG 8 cut(s) 356, 623, 721, 961, 1045, 1429, 1443, 1490
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 2 cut(s) 181, 1087
Kzo9I GATC 5 cut(s) 181, 448, 524, 1087, 1342
LmnI GCTCC 3 cut(s) 146, 1262, 1367
Lsp1109I GCAGC 6 cut(s) 553, 563, 572, 575, 749, 1236
LweI GCATC 4 cut(s) 91, 232, 282, 1274
MaeII ACGT 3 cut(s) 485, 993, 1050
MaeIII GTNAC 4 cut(s) 233, 644, 885, 1167
MalI GATC 5 cut(s) 183, 450, 526, 1089, 1344
MboI GATC 5 cut(s) 181, 448, 524, 1087, 1342
MboII GAAGA 2 cut(s) 485, 782
MflI RGATCY 1 cut(s) 1342
MhlI GDGCHC 2 cut(s) 921, 1310
MluCI AATT 2 cut(s) 260, 1420
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 1345
MseI TTAA 2 cut(s) 687, 852
MslI CAYNNNNRTG 3 cut(s) 411, 680, 992
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 6 cut(s) 144, 189, 339, 522, 537, 1385
MspR9I CCNGG 5 cut(s) 522, 538, 1008, 1097, 1385
MvaI CCWGG 2 cut(s) 1008, 1097
MwoI GCNNNNNNNGC 5 cut(s) 147, 557, 560, 566, 910
NciI CCSGG 3 cut(s) 522, 538, 1385
NdeII GATC 5 cut(s) 181, 448, 524, 1087, 1342
NlaIII CATG 8 cut(s) 356, 623, 721, 961, 1045, 1429, 1443, 1490
NlaIV GGNNCC 2 cut(s) 817, 1344
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 2 cut(s) 644, 1167
NspI RCATGY 4 cut(s) 961, 1045, 1429, 1443
OliI CACNNNNGTG 1 cut(s) 992
PceI AGGCCT 1 cut(s) 606
PciI ACATGT 1 cut(s) 957
PfeI GAWTC 7 cut(s) 131, 335, 362, 441, 1111, 1274, 1401
PflFI GACNNNGTC 1 cut(s) 484
PkrI GCNGC 7 cut(s) 550, 553, 562, 565, 568, 739, 1251
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PscI ACATGT 1 cut(s) 957
Psp6I CCWGG 2 cut(s) 1006, 1095
PspFI CCCAGC 1 cut(s) 843
PspGI CCWGG 2 cut(s) 1006, 1095
PspN4I GGNNCC 2 cut(s) 817, 1344
PspPI GGNCC 4 cut(s) 825, 1139, 1229, 1382
PstNI CAGNNNCTG 2 cut(s) 566, 1114
PsuI RGATCY 1 cut(s) 1342
PsyI GACNNNGTC 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 7 cut(s) 347, 752, 935, 953, 1022, 1226, 1444
RsaNI GTAC 7 cut(s) 346, 751, 934, 952, 1021, 1225, 1443
RseI CAYNNNNRTG 3 cut(s) 411, 680, 992
SaqAI TTAA 2 cut(s) 687, 852
SatI GCNGC 7 cut(s) 549, 552, 561, 564, 567, 738, 1250
Sau3AI GATC 5 cut(s) 181, 448, 524, 1087, 1342
Sau96I GGNCC 4 cut(s) 825, 1139, 1229, 1382
ScaI AGTACT 1 cut(s) 953
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 5 cut(s) 522, 538, 1008, 1097, 1385
SduI GDGCHC 2 cut(s) 921, 1310
SfaNI GCATC 4 cut(s) 91, 232, 282, 1274
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 2 cut(s) 825, 1229
SmiMI CAYNNNNRTG 3 cut(s) 411, 680, 992
SmlI CTYRAG 3 cut(s) 801, 890, 1207
SmoI CTYRAG 3 cut(s) 801, 890, 1207
Sse9I AATT 2 cut(s) 260, 1420
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 3 cut(s) 425, 549, 1027
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 5 cut(s) 520, 536, 1006, 1095, 1383
StyI CCWWGG 2 cut(s) 970, 1199
TaaI ACNGT 6 cut(s) 350, 630, 933, 1020, 1078, 1229
TaiI ACGT 3 cut(s) 488, 996, 1053
TaqI TCGA 1 cut(s) 507
TasI AATT 2 cut(s) 260, 1420
TatI WGTACW 5 cut(s) 345, 750, 951, 1020, 1442
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 7 cut(s) 131, 335, 362, 441, 1111, 1274, 1401
Tru1I TTAA 2 cut(s) 687, 852
Tru9I TTAA 2 cut(s) 687, 852
TscAI CASTG 2 cut(s) 930, 1467
TseFI GTSAC 2 cut(s) 644, 1167
TseI GCWGC 6 cut(s) 551, 560, 563, 566, 737, 1249
Tsp45I GTSAC 2 cut(s) 644, 1167
TspDTI ATGAA 3 cut(s) 17, 379, 783
TspGWI ACGGA 2 cut(s) 347, 461
TspRI CASTG 2 cut(s) 930, 1467
Tth111I GACNNNGTC 1 cut(s) 484
VneI GTGCAC 1 cut(s) 1306
VpaK11BI GGWCC 2 cut(s) 825, 1229
XapI RAATTY 1 cut(s) 260
XceI RCATGY 4 cut(s) 961, 1045, 1429, 1443
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
ZraI GACGTC 1 cut(s) 486
ZrmI AGTACT 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.