Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Forward (+)

18970831 .. 18976558

Gene Structure 5728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCAATGGAATTGATGGCATCCTCCGAACGTGTTTGTTATGTTCATTGCAACCACTGCAACACCATTTTAGCGGTGAGTGTTCCGGCATTCAACGGCCCATTGACGGCGGCGACGACTACAGTGGTGACGGTGAGATGTGGTCACTGTGCAAATCTGCTGTCTGTTAACATCGGAGCAGCTTCGCTCCAATATCACTCAATTACTCCTAGTGCTACTGCCGCTGCTGCTGCTGCTTCTCCACACCCTCATCCTCATACTCAGCATTATCACTCTCACCCAAATATTTTCACCCACCAGAAGCAACATCAGGTGAGCTCTGAGGACTCCTCATCAAATAAGGACTACGGATCTTCATCATCATCGTCTACTTCTTCCAAATGCAACAAGTTTGCTGCTGCTCCTGCATTTGATCAGTCCTCTACTACTGTGGACCAACCAAGAATCTCTCCCATTCGCCCACCAGAGAAGAGACAACGTGTTCCTTCAGCTTATAATAGGTTTATCAAGGAGGAAATCCAAAGGATCAAAGCTAGTAATCCTGACATTAGCCATAGGGAAGCTTTTAGCACGGCAGCCAAAAATTGGGCACATTTTCCTCACATTCACTTTGGTTTAAAGCTGGAAAGCAACAAGCAAGCAAAGCTGGATAATCAAACTTTTGCAGGAGAGGGAACTCAAAAGTCGACTAATGGCTTGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

235

Amino Acids

25.39

Weight (kDa)

9.0

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	13 - 53	8.5e-10	YABBY, N-terminal
YABBY	PF04690	135 - 194	2.6e-37	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccB7I	CCANNNNNTGG	1 cut(s)	585
AccI	GTMKAC	2 cut(s)	368, 686
AciI	CCGC	3 cut(s)	74, 110, 222
AclWI	GGATC	2 cut(s)	358, 533
AcuI	CTGAAG	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	106, 585
AflIII	ACRYGT	2 cut(s)	31, 478
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	7 cut(s)	182, 318, 491, 533, 563, 622, 646
AluI	AGCT	7 cut(s)	182, 318, 491, 533, 563, 622, 646
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	2 cut(s)	358, 533
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	8 cut(s)	179, 224, 227, 230, 233, 395, 398, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspS9I	GGNCC	2 cut(s)	98, 433
AsuHPI	GGTGA	6 cut(s)	88, 139, 145, 269, 283, 325
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	8 cut(s)	191, 211, 214, 217, 220, 382, 385, 587
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	3 cut(s)	112, 123, 588
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	2 cut(s)	210, 534
BfmI	CTRYAG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	98, 433
BmsI	GCATC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaBI	GATNNNNATC	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 585
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	355
BseGI	GGATG	2 cut(s)	20, 250
BseJI	GATNNNNATC	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	106, 585
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	275, 312
BseRI	GAGGAG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	8 cut(s)	191, 211, 214, 217, 220, 382, 385, 587
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	106, 585
BsmAI	GTCTC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	320, 592
Bsp143I	GATC	3 cut(s)	350, 412, 525
BspACI	CCGC	3 cut(s)	74, 110, 222
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	274, 313
BspPI	GGATC	2 cut(s)	358, 533
BsrDI	GCAATG	1 cut(s)	46
BssMI	GATC	3 cut(s)	350, 412, 525
Bst4CI	ACNGT	4 cut(s)	124, 133, 149, 430
Bst6I	CTCTTC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	261, 321
BstF5I	GGATG	2 cut(s)	20, 250
BstKTI	GATC	3 cut(s)	353, 415, 528
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	350, 412, 525
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 221, 227, 230, 233, 404, 643
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	8 cut(s)	191, 211, 214, 217, 220, 382, 385, 587
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	20, 250
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	3 cut(s)	55, 129, 145
Cac8I	GCNNGC	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	98, 433
DdeI	CTNAG	2 cut(s)	261, 321
DpnI	GATC	3 cut(s)	352, 414, 527
DpnII	GATC	3 cut(s)	350, 412, 525
DraI	TTTAAA	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	320
FaiI	YATR	4 cut(s)	42, 258, 495, 555
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	2 cut(s)	368, 686
FokI	GGATG	2 cut(s)	7, 237
FriOI	GRGCYC	1 cut(s)	320
FspBI	CTAG	2 cut(s)	210, 534
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	86
HincII	GTYRAC	2 cut(s)	169, 687
HindII	GTYRAC	2 cut(s)	169, 687
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	2 cut(s)	326, 444
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	6 cut(s)	88, 139, 145, 269, 283, 325
Hpy166II	GTNNAC	4 cut(s)	169, 369, 433, 687
Hpy188I	TCNGA	3 cut(s)	28, 176, 322
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	4 cut(s)	169, 369, 433, 687
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	4 cut(s)	124, 133, 149, 430
HpyCH4IV	ACGT	2 cut(s)	31, 478
HpyCH4V	TGCA	6 cut(s)	51, 60, 152, 384, 407, 665
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 221, 227, 230, 233, 404, 643
HpyF3I	CTNAG	2 cut(s)	261, 321
HpySE526I	ACGT	2 cut(s)	31, 478
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	350, 412, 525
LmnI	GCTCC	3 cut(s)	176, 192, 406
LpnPI	CCDG	9 cut(s)	99, 296, 311, 417, 477, 555, 608, 632, 651
Lsp1109I	GCAGC	8 cut(s)	191, 211, 214, 217, 220, 382, 385, 587
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	210, 534
MaeII	ACGT	2 cut(s)	31, 478
MaeIII	GTNAC	2 cut(s)	127, 143
MalI	GATC	3 cut(s)	352, 414, 527
MboI	GATC	3 cut(s)	350, 412, 525
MboII	GAAGA	3 cut(s)	345, 366, 481
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	320, 592
MluCI	AATT	3 cut(s)	11, 201, 583
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	9 cut(s)	34, 258, 264, 316, 340, 430, 505, 609, 664
MseI	TTAA	2 cut(s)	168, 617
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	89
MwoI	GCNNNNNNNGC	7 cut(s)	57, 221, 227, 230, 233, 404, 643
NdeII	GATC	3 cut(s)	350, 412, 525
NmuCI	GTSAC	2 cut(s)	127, 143
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	585
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	98, 433
PsuI	RGATCY	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	320
SalI	GTCGAC	1 cut(s)	685
SaqAI	TTAA	2 cut(s)	168, 617
Sau3AI	GATC	3 cut(s)	350, 412, 525
Sau96I	GGNCC	2 cut(s)	98, 433
SchI	GAGTC	1 cut(s)	320
SduI	GDGCHC	2 cut(s)	320, 592
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	433
Sse9I	AATT	3 cut(s)	11, 201, 583
SsiI	CCGC	3 cut(s)	74, 110, 222
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	210, 534
SstI	GAGCTC	1 cut(s)	320
TaaI	ACNGT	4 cut(s)	124, 133, 149, 430
TaiI	ACGT	2 cut(s)	34, 481
TaqI	TCGA	1 cut(s)	686
TasI	AATT	3 cut(s)	11, 201, 583
TauI	GCSGC	2 cut(s)	113, 224
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	2 cut(s)	168, 617
Tru9I	TTAA	2 cut(s)	168, 617
TscAI	CASTG	3 cut(s)	62, 129, 152
TseFI	GTSAC	2 cut(s)	127, 143
TseI	GCWGC	8 cut(s)	179, 224, 227, 230, 233, 395, 398, 575
Tsp45I	GTSAC	2 cut(s)	127, 143
TspDTI	ATGAA	2 cut(s)	35, 345
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	3 cut(s)	62, 129, 152
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	433
XmiI	GTMKAC	2 cut(s)	368, 686
XspI	CTAG	2 cut(s)	210, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.