Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Reverse (-)

46610024 .. 46616291

Gene Structure 6268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCAATGGAATTGATGGCATCCTCCGAACGTGTTTGTTATGTTCATTGCAACCTCTGCAACACCATTTTAGCGGTGAGTGTTCCAGCATTCAACGGCCCATTGACGGCGGCAACGACGACAGTGGTGACGGTGAGATGTGGTCACTGCGCAAATCTGCTGTCTGTTAACATCGGAGCAGCTTCGCTCCAATACCACTCAACTAGTCCCAGTCCTACCACTACTGCTGCTGCTACTCCTCACCCTCATCCCCATACTCAGCATTATCATTCTCACCCTAACATTTTCGCGCACCAGAAGCAACATCAGGTGAGCTCTGAGGACTCCTCATCAAATAAGGACTACGGATCTTCATCATCATCGTCTACTTCTTCCAAATGCAACAAGTTTGCTGCTGCTCCTGCATTTGATCAGTCCTCTACTACTGTAGACCAACCAAGAGTCTCTCCCATTCGCCCACCAGAGAAGAGGCAACGCGTTCCTTCAGCTTATAATAGGTTTATCAAGGAGGAAATCCAAAGGATCAAAGCTGCTAATCCTGACATTAGCCATAGGGAAGCTTTTAGCACAGCAGCCAAAAATTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGCTGGAAAGCAACAAGCAAGCAAAGCTGGATAATCAAACTTTTGCAGGAGAGGGAACTCAAAAGTCTACTAATGGCTTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

233

Amino Acids

25.4

Weight (kDa)

9.05

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	8 - 64	7e-23	YABBY, N-terminal
YABBY	PF04690	143 - 204	2.3e-37	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
Acc16I	TGCGCA	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	3 cut(s)	365, 429, 683
AccII	CGCG	2 cut(s)	290, 477
AciI	CCGC	2 cut(s)	74, 110
AclWI	GGATC	2 cut(s)	355, 530
AcuI	CTGAAG	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	106, 582
AflIII	ACRYGT	2 cut(s)	31, 475
AgsI	TTSAA	1 cut(s)	94
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	7 cut(s)	182, 315, 488, 530, 560, 619, 643
AluI	AGCT	7 cut(s)	182, 315, 488, 530, 560, 619, 643
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	355, 530
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	7 cut(s)	179, 227, 230, 392, 395, 530, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	2 cut(s)	152, 292
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	6 cut(s)	88, 139, 145, 233, 266, 322
BaeGI	GKGCMC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	7 cut(s)	191, 214, 217, 379, 382, 517, 584
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	2 cut(s)	112, 123
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	448
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	8 cut(s)	111, 180, 228, 231, 393, 396, 531, 573
BlsI	GCNGC	8 cut(s)	112, 181, 229, 232, 394, 397, 532, 574
BmgT120I	GGNCC	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BsaBI	GATNNNNATC	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 582
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	352
BseGI	GGATG	2 cut(s)	20, 247
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	106, 582
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	272, 309
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	228, 316
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	7 cut(s)	191, 214, 217, 379, 382, 517, 584
Bsh1236I	CGCG	2 cut(s)	290, 477
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	106, 582
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	317, 589
Bsp143I	GATC	3 cut(s)	347, 409, 522
BspACI	CCGC	2 cut(s)	74, 110
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	271, 310
BspFNI	CGCG	2 cut(s)	290, 477
BspPI	GGATC	2 cut(s)	355, 530
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	347, 409, 522
Bst4CI	ACNGT	3 cut(s)	124, 133, 427
Bst6I	CTCTTC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	2 cut(s)	258, 318
BstF5I	GGATG	2 cut(s)	20, 247
BstFNI	CGCG	2 cut(s)	290, 477
BstHHI	GCGC	2 cut(s)	152, 292
BstKTI	GATC	3 cut(s)	350, 412, 525
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	3 cut(s)	347, 409, 522
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 298, 401, 640
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	589
BstUI	CGCG	2 cut(s)	290, 477
BstV1I	GCAGC	7 cut(s)	191, 214, 217, 379, 382, 517, 584
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	20, 247
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	129, 145
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	2 cut(s)	152, 292
Cfr13I	GGNCC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	258, 318
DpnI	GATC	3 cut(s)	349, 411, 524
DpnII	GATC	3 cut(s)	347, 409, 522
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	317
FaiI	YATR	4 cut(s)	42, 255, 492, 552
FaqI	GGGAC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	3 cut(s)	365, 429, 683
Fnu4HI	GCNGC	8 cut(s)	111, 180, 228, 231, 393, 396, 531, 573
FokI	GGATG	2 cut(s)	7, 234
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	8 cut(s)	111, 180, 228, 231, 393, 396, 531, 573
FspBI	CTAG	1 cut(s)	204
FspI	TGCGCA	1 cut(s)	151
GlaI	GCGC	2 cut(s)	151, 291
GluI	GCNGC	8 cut(s)	111, 180, 228, 231, 393, 396, 531, 573
HaeIII	GGCC	1 cut(s)	99
HhaI	GCGC	2 cut(s)	152, 292
Hin6I	GCGC	2 cut(s)	150, 290
HinP1I	GCGC	2 cut(s)	150, 290
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	2 cut(s)	323, 441
HpaI	GTTAAC	1 cut(s)	169
HphI	GGTGA	6 cut(s)	88, 139, 145, 233, 266, 322
Hpy166II	GTNNAC	4 cut(s)	169, 366, 430, 684
Hpy188I	TCNGA	3 cut(s)	28, 176, 319
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	4 cut(s)	169, 366, 430, 684
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	3 cut(s)	124, 133, 427
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	51, 60, 381, 404, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 298, 401, 640
HpyF3I	CTNAG	2 cut(s)	258, 318
HpySE526I	ACGT	1 cut(s)	31
HspAI	GCGC	2 cut(s)	150, 290
Ksp22I	TGATCA	1 cut(s)	409
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	347, 409, 522
LmnI	GCTCC	3 cut(s)	176, 192, 403
Lsp1109I	GCAGC	7 cut(s)	191, 214, 217, 379, 382, 517, 584
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	127, 143
MalI	GATC	3 cut(s)	349, 411, 524
MboI	GATC	3 cut(s)	347, 409, 522
MboII	GAAGA	3 cut(s)	342, 363, 478
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	317, 589
MluCI	AATT	2 cut(s)	11, 580
MluI	ACGCGT	1 cut(s)	475
MlyI	GAGTC	2 cut(s)	317, 450
MseI	TTAA	2 cut(s)	168, 614
Mva1269I	GAATGC	1 cut(s)	89
MvnI	CGCG	2 cut(s)	290, 477
MwoI	GCNNNNNNNGC	4 cut(s)	57, 298, 401, 640
NdeII	GATC	3 cut(s)	347, 409, 522
NmuCI	GTSAC	2 cut(s)	127, 143
NsbI	TGCGCA	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PctI	GAATGC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	8 cut(s)	112, 181, 229, 232, 394, 397, 532, 574
PleI	GAGTC	2 cut(s)	317, 449
PpsI	GAGTC	2 cut(s)	317, 449
PsiI	TTATAA	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	168, 614
SatI	GCNGC	8 cut(s)	111, 180, 228, 231, 393, 396, 531, 573
Sau3AI	GATC	3 cut(s)	347, 409, 522
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	317, 450
SduI	GDGCHC	2 cut(s)	317, 589
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	426
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	2 cut(s)	11, 580
SsiI	CCGC	2 cut(s)	74, 110
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	317
TaaI	ACNGT	3 cut(s)	124, 133, 427
TaiI	ACGT	1 cut(s)	34
TasI	AATT	2 cut(s)	11, 580
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	168, 614
Tru9I	TTAA	2 cut(s)	168, 614
TscAI	CASTG	2 cut(s)	129, 152
TseFI	GTSAC	2 cut(s)	127, 143
TseI	GCWGC	7 cut(s)	179, 227, 230, 392, 395, 530, 572
Tsp45I	GTSAC	2 cut(s)	127, 143
TspDTI	ATGAA	2 cut(s)	35, 342
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	129, 152
Van91I	CCANNNNNTGG	1 cut(s)	582
XmiI	GTMKAC	3 cut(s)	365, 429, 683
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.